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lncRNA: ENSG00000273702

Summary for RP11-758H9.2

Gene summary

Gene information	Ensembl ID	ENSG00000273702
	Gene symbol	RP11-758H9.2
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-758H9.2

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000273702	1.035608e+02	-1.070188e+00	9.476577e-02	-1.129298e+01	1.420000e-29	1.420000e-28	DOWN	KIRC
ENSG00000273702	1.848095e+02	-1.337531e+00	1.856745e-01	-7.203636e+00	5.860000e-13	4.710000e-12	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000273702	-5.484502e-01	2.638302e-08	KICH	1.250865e-07

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lncRNA-Protein interaction for RP11-758H9.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000273702	ENST00000611877	RP11-758H9.2	ENSG00000130254	SAFB2	101.54	92.3315	Q14151	TF,RBP	NA
ENSG00000273702	ENST00000611877	RP11-758H9.2	ENSG00000135164	DMTF1	97.75	90.5893	Q9Y222	TF	NA
ENSG00000273702	ENST00000611877	RP11-758H9.2	ENSG00000256223	ZNF10	14.66	92.4622	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000273702	ENST00000611877	RP11-758H9.2	ENSG00000130254	SAFB2	101.54	91.9358	Q14151	TF,RBP	NA

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lncRNA-DNA interaction for RP11-758H9.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

E2F6,CHTOP,LSM5,SOX12,PHF1,RBM6,HMGN3,ZNF14,THYN1,KHDC1,GLI4,CENPT,NOL3,HSF4,DZIP3,RBM5,CPEB3,CIRBP,MRM1,SUGP1,NFYB,MZF1,HES1,NRF1,ZNF2,KAT7,SUGP2,RBM4B,TRUB2,DDX42,DMTF1,CSTF3,VEZF1,TIGD6,TIGD1,RBM45,RNPS1,DDX51,ERAL1,TRA2A,PCBP4,CWC15,ZNF77,UNC50,NFYC,SRSF2,CASC3,AKAP1,XPA,FIZ1,MYNN,PPIE,ZMAT1,NELFE,ZNF83,THAP9,LARP6,NSUN6,ZNF3,ZNF34,SAFB2,THAP6,THOC1,PATZ1,LSM3,ZNF18,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

HSF4,MZF1,NOL3,ZNF18,E4F1,RBM5,E2F6,HES1,ZMAT1,ZNF14,ZFP2,TIGD6,HLF,MYNN,ZNF3,ZNF83,RBM6,TRA2A,CIRBP,AKAP1,SRP14

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-758H9.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000273702	ENST00000611877	exon_skip_150854	chr17:32366664-32366757	-10.99	-0.1409	ZNF207	ENST00000321233	In-frame
ENSG00000273702	ENST00000611877	exon_skip_302353	chr19:11033766-11033865	-16.00	-0.1758	SMARCA4	ENST00000344626,ENST00000429416	In-frame
ENSG00000273702	ENST00000611877	exon_skip_27178	chr1:53233541-53233652	-12.69	-0.1379	MAGOH	ENST00000371470	In-frame
ENSG00000273702	ENST00000611877	exon_skip_506519	chr9:120407011-120407248	-25.16	-0.1159	CDK5RAP2	ENST00000349780	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000273702	ENST00000611877	exon_skip_6419	chr1:51756319-51756358	-8.30	-0.2441	OSBPL9	ENST00000428468	In-frame
ENSG00000273702	ENST00000611877	exon_skip_338422	chr2:38746143-38746179	-5.88	-0.2100	SRSF7	ENST00000313117	In-frame
ENSG00000273702	ENST00000611877	exon_skip_41841	chr10:68756272-68756483	-25.83	-0.1305	CCAR1	ENST00000265872	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_111863	chr14:23565815-23565892	-18.63	-0.3005	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_326885	chr2:74490024-74490127	-18.72	-0.2127	TTC31	ENST00000233623	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_374375	chr3:49675182-49675309	-20.18	-0.1886	APEH	ENST00000296456	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_382458	chr3:38131595-38131638	-8.35	-0.2037	ACAA1	ENST00000333167	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_481821	chr8:22067084-22067159	-12.14	-0.1759	DMTN	ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266	In-frame
ENSG00000273702	ENST00000611877	exon_skip_23135	chr1:23796508-23796586	-17.71	-0.2725	GALE	ENST00000374497	In-frame
ENSG00000273702	ENST00000611877	exon_skip_319223	chr19:43526200-43526349	-22.37	-0.1564	ETHE1	ENST00000292147	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_333962	chr2:219247112-219247246	-16.57	-0.1454	STK16	ENST00000396738,ENST00000409638	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_287763	chr17:28884224-28884315	-15.53	-0.2824	FLOT2	ENST00000394908	Frame-shift
ENSG00000273702	ENST00000611877	exon_skip_436498	chr5:96729152-96729209	-10.27	-0.4465	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000273702	ENST00000611877	exon_skip_131398	chr15:101286213-101286293	-12.43	-0.2072	SNRPA1	ENST00000254193	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59618683-59618785	202.00	-89.57	108	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59619047-59619153	199.00	-90.87	107	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59619474-59619573	195.00	-84.56	108	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59618773-59618890	193.00	-110.98	116	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59618912-59619019	163.00	-106.08	116	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59619555-59619668	160.00	-85.18	104	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59619211-59619311	156.00	-87.18	104	NA
ENSG00000273702	hsa-mir-223	ENST00000611877	chr17:59618567-59618670	151.00	-78.14	67	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59619131-59619240	196.00	-82.65	108	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59618868-59618960	172.00	-93.41	90	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59619469-59619544	165.00	-74.26	82	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59619291-59619372	162.00	-65.19	79	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59618731-59618820	161.00	-83.57	91	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59618628-59618717	160.00	-81.42	89	NA
ENSG00000273702	hsa-mir-22	ENST00000611877	chr17:59618960-59619051	140.00	-87.27	83	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59619414-59619505	198.00	-58.16	86	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59619073-59619167	170.00	-64.24	89	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59619532-59619625	168.00	-61.96	94	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59618947-59619033	161.00	-77.67	85	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59619281-59619372	150.00	-57.62	89	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59619167-59619253	149.00	-65.70	86	NA
ENSG00000273702	hsa-mir-511	ENST00000611877	chr17:59618664-59618750	147.00	-65.32	81	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59618890-59618965	160.00	-78.14	80	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59619570-59619664	160.00	-77.86	89	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59619459-59619549	159.00	-81.77	89	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59619024-59619110	152.00	-72.94	87	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59619307-59619406	150.00	-68.94	92	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59618609-59618696	142.00	-84.44	83	NA
ENSG00000273702	hsa-mir-142	ENST00000611877	chr17:59618731-59618815	141.00	-82.23	89	NA

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Variants for RP11-758H9.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000273702	ENSG00000135164	DMTF1	ENSG00000099326	MZF1	5	KICH,KIRP,PAAD,TGCT,THCA
ENSG00000273702	ENSG00000135164	DMTF1	ENSG00000154957	ZNF18	5	CHOL,KICH,KIRP,PAAD,THCA
ENSG00000273702	ENSG00000135164	DMTF1	ENSG00000003756	RBM5	5	KICH,KIRP,PAAD,TGCT,THCA
ENSG00000273702	ENSG00000135164	DMTF1	ENSG00000164548	TRA2A	5	CHOL,KICH,KIRP,TGCT,THCA

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000273702	RP11-758H9.2,hsa-mir-22,WDR33	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ZHX2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RXRB	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CRMP1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,C1orf35	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PHF2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,DDX42	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,KAT7	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,COIL	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,TRMT10B	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBM6	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,USP21	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,YTHDC1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,LCMT2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CBX1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PRR14	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,C2orf68	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PM20D2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RPRD2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,INO80D	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RING1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,KANSL1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ZNF7	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NAA16	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,FAM117B	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SENP7	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,BOLA1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PARP2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,KAT2A	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,TSEN2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ERCC3	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PHC1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,EXD3	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBM4B	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,COA5	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RAD52	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PCF11	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,HEXIM2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,VEZF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NAB1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PAXBP1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,LUC7L3	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PAGR1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ING5	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CLK2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,LUC7L2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SENP6	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,KHDC4	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CEP95	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,EIF4ENIF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,TIA1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,DPF2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RSBN1L	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MSL1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RC3H1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBBP6	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,EDRF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CTPS2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SBK1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,TAF7	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,POLG2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MLLT6	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NXF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NVL	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MYEF2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MRPL38	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBMX	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PMS1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,UBE2G2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,FBXO46	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PHF12	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MSL2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBM45	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBM5	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CXXC1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,COPS7B	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RCOR3	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ANGEL2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,C14orf93	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RBM14	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,HINFP	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,UIMC1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,MKS1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PCIF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SF3B1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,FNBP4	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SRSF1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,DGCR8	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,DET1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,POGZ	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,BRD8	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,TBP	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,RYK	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CTDSPL2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,BUD13	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,LYSMD1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,DCAF8	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NSMCE4A	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,CASC3	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,N4BP2L2	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,PRPF39	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,WBP1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,NFRKB	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,ZBTB5	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,SMAD4	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-22,KATNBL1	KICH,CHOL,LGG,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,C20orf96	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,PNMA8A	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,C17orf75	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,C14orf93	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,GAS8	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-511,ZFP41	CHOL,THCA,PAAD,SARC,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,TOM1L2	THCA,LGG,PAAD,SARC,THYM,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,DCAKD	THCA,PAAD,SARC,THYM,LIHC
ENSG00000273702	RP11-758H9.2,hsa-mir-142,MAPK10	THCA,PAAD,SARC,THYM,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,CRY2	LGG,PAAD,SARC,THYM,KIRP,LIHC
ENSG00000273702	RP11-758H9.2,hsa-mir-142,TEF	THCA,SARC,THYM,KIRP,LIHC
ENSG00000273702	RP11-758H9.2,hsa-mir-142,CASKIN2	THCA,LGG,SARC,THYM,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,PRDM11	THCA,LGG,SARC,THYM,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,IFT140	THCA,PAAD,SARC,THYM,KIRP
ENSG00000273702	RP11-758H9.2,hsa-mir-142,NGRN	THCA,PAAD,SARC,THYM,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000273702.1	ENST00000611877.1	94	281	0

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential