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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000273619

Summary for RP5-908M14.9

check button Gene summary

Gene informationEnsembl ID

ENSG00000273619

Gene symbol

RP5-908M14.9

Gene name
HGNC
Entrez ID
Gene typeantisense
Synonyms
UniProtAcc

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Structure and expression level for RP5-908M14.9

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002736191.250916e+021.406517e+002.413314e-015.828157e+005.600000e-098.250000e-08UPBLCA
ENSG000002736191.031918e+021.098006e+001.815311e-016.048581e+001.460000e-098.770000e-09UPUCEC
ENSG000002736191.390374e+021.161926e+002.651402e-014.382309e+001.170000e-052.219780e-04UPESCA
ENSG000002736199.214826e+011.676959e+001.433758e-011.169625e+011.330000e-311.540000e-30UPLUSC
ENSG000002736199.970413e+011.309200e+001.193705e-011.096753e+015.470000e-285.070000e-27UPBRCA
ENSG000002736196.606163e+011.185163e+001.548923e-017.651529e+001.990000e-141.330000e-13UPLUAD
ENSG000002736196.914597e+011.425059e+001.642813e-018.674503e+004.150000e-184.800000e-17UPCOAD
ENSG000002736198.348455e+011.209537e+001.711432e-017.067398e+001.580000e-121.310000e-11UPLIHC
ENSG000002736199.026007e+011.646693e+003.472518e-014.742073e+002.120000e-062.470000e-05UPREAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002736194.298425e-013.209859e-03CHOL4.484205e-03
ENSG00000273619-3.615307e-014.995729e-04KICH7.294489e-04
ENSG000002736193.655129e-014.345615e-14LIHC4.231257e-13

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lncRNA-Protein interaction for RP5-908M14.9

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000132780NASP24.091.8879P49321EpiNA
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000277258PCGF223.7690.4377P35227TF,EpiNA
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000204227RING123.1391.1181Q06587EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000130254SAFB222.2691.2241Q14151TF,RBPNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000130254SAFB222.2692.6746Q14151TF,RBPNA
ENSG00000273619ENST00000610979RP5-908M14.9ENSG00000004534RBM621.6192.2178P78332RBPNA

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lncRNA-DNA interaction for RP5-908M14.9

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP5-908M14.9

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
IDH3A,NEK4,FNIP1,AP5M1,ARID1A,ANTXR1,SENP7,RNF123,TBC1D5,ESYT2,ATM,BECN1,SMCR8,PPP1R12A,GNL3L,POLR1B,TPM3,TMEM161B,ACVR1B,KIAA1109,RIOK3,STAU2,KAT6B,TBC1D15,EDEM1,ITPR2,EIF4G1,FCHO2,CLDND1,MAT2B,LGALS8,PBRM1,TRAK1,ANKRD28,CAMK2D,HEATR6,PSMC1,VPS13B,SRP72,DST,SACM1L,MAN1A2,FGD4,L2HGDH,TRIM5,CELF2,CSNK1G1,ATP11B,PRRC2C,SNX19,MIER1,PHKB,PDPK1,GPRC5B,ACBD5,PHF3,ARFIP1,CEP120,PAK2,ZEB2,CASP8,CPEB4,LONP2,TMEM127,STRN,CALD1,SLFN5,EPS8,GOLIM4,SP100,PHF20,LRP10,KIDINS220,CYLD,CDC27,GTF2H3,TMCO3,SMARCC1,ZC3H12C,BTBD10,APPBP2,DDX6,ETFDH,GANAB,SEC23A,MKLN1,MFSD9,TXNRD1,ITSN2,PSD3,MTMR12,RAB35,RB1CC1,KLF13,SMAD1,ERGIC1,WIPF2,AGFG1,FAM102B,TM7SF3,FBXW8,TANGO6,IPO8,UBE4B,TP53BP2,NDST1,VPS35,YAP1,ARL1,COMMD2,FOXN3,SEC63,GTF3C3,RNF138,UVRAG,MARCHF7,OSBPL8,NCOA4,DDX5,LDLR,MTRR,KIAA1217,TMEM123,AZI2,SELENOT,DCP1A,ACTR2,DCAF7,PLSCR4,VAMP7,RBM7,GPATCH8,CNOT8,ALMS1,ABL2,ICAM1,PPP2CB,MED1,NUP58,HBP1,EIF4G2,IPO9,CD46,NIN,CUL2,GON4L,CAB39,HUWE1,PRKAR1A,SLC25A40,TEP1,ERAP1,YME1L1,BACH1,GOLM2,LPP,NSRP1,DCAF5,TLK1,CPD,RABEP1,FAM13B,NOTCH2,EFL1,FNDC3B,ATF1,TAF1A,FYCO1,SPOPL,POLG,NOMO2,LRP6,ASB8,TMEM87B,FAM168B,PNPO,VPS4B,SNX12,HACD3,CHP1,NEPRO,NAF1,POGLUT3,FRS2,KHNYN,SCP2,EDC4,EHBP1,LARP1,UBXN7,NPEPPS,ACTN1,RCHY1,BZW1,DCTN4,SLAIN2,PPAT,PKN2,GPATCH2L,PDXDC1,ARIH1,FNDC3A,PUM1,OS9,SEC24B,PDE4DIP,RABL3,FAM91A1,KMT2D,CTNNB1,BCL2L13,FUBP1,PKD2,AP3D1,ANAPC1,MON2,MAPK14,RNF111,TP53BP1,SSR3,PPIP5K2,IFNAR2,MOB1B,USP32,ZDHHC5,VCL,SNX30,G3BP1,NCBP1,WBP11,MORF4L1,PIP4K2A,STAT3,SLC25A24,POLR1A,PRMT5,TMEM43,CCNI,DDX3X,IPO5,SLC25A15,ASXL2,NIPBL,USP47,TARS1,POLR2B,FRYL,CYRIB,CEP350,PIKFYVE,TC2N,DDHD2,ACVR1,MYOF,HSPG2,EIF3C,TIPARP,SLC35A5,MAP3K3,RAB18,ATP2B4,SLC10A7,DNAJC13,CFL2,MED13,RAP1B,KDSR,ARF3,DYRK2,EP400,USP46,ERO1A,XRN1,SMG6,CEMIP2,SPRING1,KIAA0232,PKP2,NUP98,CFH,KIAA0586,DDX60,TRIM23,ST13,ATP11A,ARHGEF18,PLBD2,TRIP12,AKAP10,AKT3,PSMD5,GTF2A1,CHD9,TFIP11,GGCX,PRKAA1,MYO18A,SOS1,SMAD5,SLC12A6,MORC3,CSNK1A1,NDFIP2,ZEB1,TUBGCP3,GOSR1,CTNNA1,OSBPL1A,MIEF1,UGGT1,RPE,VRK2,GCC2,TAF2,CAST,SLC25A30,SMIM15,TRIM33,F2R,PIP5K1A,PDCD10,HEATR5A,MED21,FEM1B,PAFAH1B1,TMBIM6,MPRIP,DOCK1,NEMF,CCNK,CTDSP2,NCOR1,EMC1,WSB2,TAF5L,SCAF11,PGM2,CNOT1,SLC16A4,ARL6IP5,NF1,CAMSAP2,MBP,SLC35E1,FEZ2,ERLIN1,MYH9,SLC11A2,USP15,UBE2K,FCF1,SH3PXD2A,NUP155,YPEL2,WWTR1,DNAJC16,FAM214A,SECISBP2L,UBR1,DAG1,ACTR3,SEPTIN10,PCDHGC3,NOP9,CHD8,TAOK3,PIP4K2C,RAB3GAP1,TSR1,MED14,SLC4A7,HPS3,STAMBP,TOX4,ADAM10,KIAA0100,PRDM2,ARHGAP21,IARS1,SUCLG2,UBE4A,VPS26A,CDV3,ERBIN,DNAJC14,PHACTR2,ATL2,CAP1,ITPRIPL2,ENTPD4,IPO11,ZC3H11A,ATF7,WASF2,VGLL4,MACF1,SH3GLB1,NBR1,RIC1,NUMB,MARF1,SPRED2,CUL4B,KTN1,C5orf24,ATP2C1,MCCC2,ILK,PTPN21,RRN3,SGMS1,PTPN4,FARP2,SNRK,DYNC1I2,DOCK7,GLS,ZDHHC17,DAZAP2,RFFL,CLIP1,SART3,NSUN3,ARNT,CORO1C,RAD50,RNF19B,API5,ATF2,NCOA2,PTPRB,RC3H2,UBE3B,SNAP23,STK38L,MAPK1,RNF169,UBR5,CNIH1,ITPRID2,PRKAR2A,TBC1D2B,RAB11FIP1,TLR3,BRCC3,USP9X,MAST4,ROCK2,ZBED6,RHBDD1,DESI2,UEVLD,MTMR1,TNS1,TGFBRAP1,DDR2,RREB1,WNK1,SSH1,SUN2,RAB27A,RBM41,CHURC1,TMLHE,KLHL5,EPS15,CCNYL1,OSBPL9,LYSMD3,TIRAP,CCNG1,NID2,PPARA,GALC,SNX2,ANTXR2,KIF2A,PLS1,REST,EIF3L,SOS2,C21orf91,CS,BACE1,PCYT1A,POLK,CCDC91,ACTN4,BRF2,DCAF17,IL6ST,AFF1,BLOC1S6,ABCE1,MRTFB,USP8,PICALM,AGO2,FAM114A2,FYTTD1,SNX18,ITFG1,ABCD3,USP14,HECTD4,MAGT1,CPSF2,RAB2A,SPG11,FAM172A,ATP2B1,INPP4A,GLYR1,RRM2B,IBTK,FER,BAZ1A,TANK,CREB1,NRDC,ATL3,RAB6A,KPNB1,GSK3B,VPS26C,QKI,TAX1BP1,AEBP2,OXSR1,RNF4,NT5C2,ATP6V1B2,ZMYND11,RALGAPB,CCNG2,HIPK1,LIMS1,QTRT2,TACC1,EPB41,SPIRE1,PI4KA,PSEN1,CEP104,INTS6,SMAD4,ZMYM5,PTPN11,SCYL2,LITAF,MID2,ADGRL2,POLR2A,ANKFY1,TLE4,DNAJC11,CLTC,ATRN,NCOA1,SDHC,ATP2A2,SON,PIK3C3,LZIC,ZC3H13,CCDC47,BIRC2,PTPRG,RAB31,HSPA8,PTPN12,M6PR,SNX29,ABCB7,APAF1,TAF1,PCNX1,DMXL2,UBR4,CDC42SE2,ZNF720,IQGAP1,SMARCA2,SLMAP,PLEKHA5,CLCN3,CMTR2,SESTD1,CIPC,MAN2A1,KLF7,STRAP,RFX5,ARHGAP5,CLCC1,MPDZ,CSNK2A1,PPP1CB,FTO,COPB2,FAN1,STIM1,SEC14L1,SF3B1,ADD1,ESYT1,ARSB,MTMR9,KITLG,ZFYVE1,PDLIM5,KIF13B,VEZT,DYNC1LI2,KBTBD4,MIDEAS,ZNF106,APP,RASA1,STT3A,CERT1,PTPN9,MAP4,SF3A1,ARMC8,PHC3,SEPTIN2,SNX1,COG6,SIK3,BCL9L,ABHD5,RSRC1,TAF1B,SERINC3,DOCK9,NCOA3,SYNJ1,PIGN,SBF2,ITGA6,ATP9B,ABCA1,ERC1,TNPO1,RHOT1,SNX4,NEK7,FAM160B1,RO60,MAPK9,HEATR5B,BIRC6,ACADM,SEC31A,CYFIP1,ZNF28,TMEM184C,DENND5A,BDP1,RALB,SYNRG,EVC,USP10,AFAP1,AHNAK,MCFD2,NDUFS1,NSD1,SLC39A6
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000273619ENST00000610979exon_skip_291984chr17:59119318-59119495-16.65-0.1252SKA2ENST00000330137In-frame
ENSG00000273619ENST00000610979exon_skip_514339chrX:23713134-23713208-7.62-0.1314ACOT9ENST00000336430Frame-shift
ENSG00000273619ENST00000610979exon_skip_5818chr1:45568484-45568684-27.83-0.1435AKR1A1ENST00000351829,ENST00000372070Frame-shift
ENSG00000273619ENST00000610979exon_skip_6419chr1:51756319-51756358-9.58-0.3685OSBPL9ENST00000428468In-frame
ENSG00000273619ENST00000610979exon_skip_303345chr19:17227839-17228005-25.72-0.1799OCEL1ENST00000215061Frame-shift
ENSG00000273619ENST00000610979exon_skip_353954chr20:63875815-63875875-8.20-0.1491TPD52L2ENST00000346249In-frame
ENSG00000273619ENST00000610979exon_skip_382458chr3:38131595-38131638-8.09-0.2311ACAA1ENST00000333167Frame-shift
ENSG00000273619ENST00000610979exon_skip_436035chr5:79656957-79657001-9.67-0.2614TENT2ENST00000296783,ENST00000428308,ENST00000453514Frame-shift
ENSG00000273619ENST00000610979exon_skip_494079chr8:144099080-144099205-23.70-0.1927SHARPINENST00000398712Frame-shift
ENSG00000273619ENST00000610979exon_skip_41813chr10:68337857-68337996-22.03-0.1620HNRNPH3ENST00000265866Frame-shift
ENSG00000273619ENST00000610979exon_skip_66482chr11:126274926-126275021-14.97-0.1576FOXRED1ENST00000263578Frame-shift
ENSG00000273619ENST00000610979exon_skip_92074chr12:50142052-50142110-8.52-0.1521CERS5ENST00000317551Frame-shift
ENSG00000273619ENST00000610979exon_skip_97655chr12:120579773-120579923-15.15-0.1273POP5ENST00000357500In-frame
ENSG00000273619ENST00000610979exon_skip_123601chr15:74897010-74897219-24.12-0.1188MPIENST00000352410Frame-shift
ENSG00000273619ENST00000610979exon_skip_291980chr17:59119318-59119495-16.65-0.1252SKA2ENST00000330137In-frame
ENSG00000273619ENST00000610979exon_skip_324294chr2:27774423-27774530-13.88-0.1374MRPL33ENST00000296102Frame-shift
ENSG00000273619ENST00000610979exon_skip_326885chr2:74490024-74490127-20.58-0.2673TTC31ENST00000233623Frame-shift
ENSG00000273619ENST00000610979exon_skip_356108chr20:34740362-34743341-64.51-0.1052NCOA6ENST00000359003,ENST00000374796In-frame
ENSG00000273619ENST00000610979exon_skip_442657chr5:74730259-74730398-16.09-0.1247GFM2ENST00000296805,ENST00000509430Frame-shift
ENSG00000273619ENST00000610979exon_skip_445390chr5:150403120-150403312-26.92-0.1447CD74ENST00000009530In-frame
ENSG00000273619ENST00000610979exon_skip_481699chr8:19824802-19824972-14.46-0.1071INTS10ENST00000397977Frame-shift
ENSG00000273619ENST00000610979exon_skip_300022chr18:79919183-79919400-29.28-0.1627PQLC1ENST00000397778Frame-shift
ENSG00000273619ENST00000610979exon_skip_319223chr19:43526200-43526349-25.94-0.2470ETHE1ENST00000292147Frame-shift
ENSG00000273619ENST00000610979exon_skip_326741chr2:73946718-73946906-20.08-0.1109DGUOKENST00000264093Frame-shift
ENSG00000273619ENST00000610979exon_skip_358606chr20:63202286-63203807-68.75-0.1118YTHDF1ENST00000370339In-frame
ENSG00000273619ENST00000610979exon_skip_356643chr20:35632162-35632234-9.14-0.1474CPNE1ENST00000352393,ENST00000397443In-frame
ENSG00000273619ENST00000610979exon_skip_377198chr3:123130479-123130616-25.97-0.1938PDIA5ENST00000316218Frame-shift
ENSG00000273619ENST00000610979exon_skip_501752chr9:136992924-136992974-11.17-0.2539PAXXENST00000371620Frame-shift
ENSG00000273619ENST00000610979exon_skip_371367chr3:9697710-9697866-20.02-0.1483MTMR14ENST00000296003In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for RP5-908M14.9

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000273619ENST00000610979DOCK9ENSG00000088387ENST00000627024-0.1026470-LUSC
ENSG00000273619ENST00000610979DOCK9ENSG00000088387ENST00000427887-0.1171486-LUSC
ENSG00000273619ENST00000610979DOCK9ENSG00000088387ENST00000479769-0.1019275-LUSC
ENSG00000273619ENST00000610979SOS2ENSG00000100485ENST00000543680-0.2037511-COAD,READ
ENSG00000273619ENST00000610979SOS2ENSG00000100485ENST00000556452-0.122371-COAD,READ
ENSG00000273619ENST00000610979CERT1ENSG00000113163ENST00000261415-0.1839389-LUSC
ENSG00000273619ENST00000610979YAP1ENSG00000137693ENST00000531439-2.1300359-UCEC,BRCA
ENSG00000273619ENST00000610979YAP1ENSG00000137693ENST00000524575-0.104479-UCEC,BRCA
ENSG00000273619ENST00000610979NEK7ENSG00000151414ENST00000367383-0.5120452-UCEC,LUSC,READ
ENSG00000273619ENST00000610979FCHO2ENSG00000157107ENST00000287761-0.19121-LUSC,READ
ENSG00000273619ENST00000610979MORC3ENSG00000159256ENST00000549948-0.10881-UCEC
ENSG00000273619ENST00000610979MORC3ENSG00000159256ENST00000552581-0.1004135-UCEC
ENSG00000273619ENST00000610979SLMAPENSG00000163681ENST00000495364-0.212340-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979SLMAPENSG00000163681ENST00000494088-0.1183335-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979SNRKENSG00000163788ENST00000454177-0.110093-BLCA,UCEC,LUSC,LUAD,READ
ENSG00000273619ENST00000610979SNRKENSG00000163788ENST00000437827-0.1176178-BLCA,UCEC,LUSC,LUAD,READ
ENSG00000273619ENST00000610979TLR3ENSG00000164342ENST00000504367-0.1880626-LUSC,BRCA,COAD,LIHC,READ
ENSG00000273619ENST00000610979PLSCR4ENSG00000114698ENST00000446574-0.1002389-BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ
ENSG00000273619ENST00000610979PLSCR4ENSG00000114698ENST00000493382-0.148458-BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ
ENSG00000273619ENST00000610979SCP2ENSG00000116171ENST00000478274-0.12371-COAD,LIHC,READ
ENSG00000273619ENST00000610979ACADMENSG00000117054ENST00000420607-0.3009104-COAD,LIHC,READ
ENSG00000273619ENST00000610979ACADMENSG00000117054ENST00000528016-0.134890-COAD,LIHC,READ
ENSG00000273619ENST00000610979ABCD3ENSG00000117528ENST00000315713-0.1159180-COAD,READ
ENSG00000273619ENST00000610979PDLIM5ENSG00000163110ENST00000512274-0.1145152-BLCA,UCEC,LIHC
ENSG00000273619ENST00000610979PDLIM5ENSG00000163110ENST00000513341-0.28551-BLCA,UCEC,LIHC
ENSG00000273619ENST00000610979PDLIM5ENSG00000163110ENST00000506632-0.116627-BLCA,UCEC,LIHC
ENSG00000273619ENST00000610979ABCA1ENSG00000165029ENST00000423487-0.23501-BRCA,READ
ENSG00000273619ENST00000610979ABCA1ENSG00000165029ENST00000374733-0.1369172-BRCA,READ
ENSG00000273619ENST00000610979ETFDHENSG00000171503ENST00000307738-0.1074480-ESCA,COAD,LIHC,READ
ENSG00000273619ENST00000610979SUCLG2ENSG00000172340ENST00000493112-0.1031168-ESCA,COAD,LIHC,READ
ENSG00000273619ENST00000610979PLS1ENSG00000120756ENST00000497002-0.219363-COAD,READ
ENSG00000273619ENST00000610979ABHD5ENSG00000011198ENST00000413300-0.1551181-COAD
ENSG00000273619ENST00000610979KITLGENSG00000049130ENST00000357116-0.1121271-BLCA,COAD,READ
ENSG00000273619ENST00000610979PPP1R12AENSG00000058272ENST00000550299-0.173613-BLCA,UCEC,READ
ENSG00000273619ENST00000610979RAB27AENSG00000069974ENST00000564609-0.1475193-BLCA,ESCA,LUSC,COAD,READ
ENSG00000273619ENST00000610979RAB27AENSG00000069974ENST00000569493-0.1523193-BLCA,ESCA,LUSC,COAD,READ
ENSG00000273619ENST00000610979PTPN21ENSG00000070778ENST00000553531-0.10886-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979PTPN21ENSG00000070778ENST00000536337-0.11701-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979ATP2B1ENSG00000070961ENST00000393164-0.1390425-COAD,READ
ENSG00000273619ENST00000610979SEC24BENSG00000138802ENST00000504968-0.118038-LIHC
ENSG00000273619ENST00000610979SEC24BENSG00000138802ENST00000399100-0.19921-LIHC
ENSG00000273619ENST00000610979ARL6IP5ENSG00000144746ENST00000485444-0.145321-LUSC
ENSG00000273619ENST00000610979SLC25A24ENSG00000085491ENST00000569674-0.10211-READ
ENSG00000273619ENST00000610979RIOK3ENSG00000101782ENST00000577501-0.109487-COAD,READ
ENSG00000273619ENST00000610979ZNF106ENSG00000103994ENST00000569648-0.1947167-BLCA,LUSC,BRCA,LUAD
ENSG00000273619ENST00000610979PPP2CBENSG00000104695ENST00000520334-0.1450101-READ
ENSG00000273619ENST00000610979VPS4BENSG00000119541ENST00000591519-0.1419169-COAD,READ
ENSG00000273619ENST00000610979AHNAKENSG00000124942ENST00000530124-0.1483284-BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979AHNAKENSG00000124942ENST00000257247-0.1186238-BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979RNF138ENSG00000134758ENST00000577999-0.1179249-READ
ENSG00000273619ENST00000610979ITPRID2ENSG00000138434ENST00000451836-0.12521-LUAD,READ
ENSG00000273619ENST00000610979SECISBP2LENSG00000138593ENST00000561428-0.1396245-ESCA,LUSC,LUAD,READ
ENSG00000273619ENST00000610979CCNG2ENSG00000138764ENST00000395640-0.11261-READ
ENSG00000273619ENST00000610979OSBPL1AENSG00000141447ENST00000357041-0.2517417-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979OSBPL1AENSG00000141447ENST00000578013-0.5764101-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979OSBPL1AENSG00000141447ENST00000578055-0.1196436-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979OSBPL1AENSG00000141447ENST00000584119-0.11831-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979OSBPL1AENSG00000141447ENST00000582645-0.12131-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979CAMK2DENSG00000145349ENST00000379773-0.104273-READ
ENSG00000273619ENST00000610979CDC42SE2ENSG00000158985ENST00000502582-0.111930-READ
ENSG00000273619ENST00000610979ANTXR2ENSG00000163297ENST00000404191-0.2360255-BLCA,UCEC,LUSC,BRCA,COAD,LIHC,READ
ENSG00000273619ENST00000610979ANTXR2ENSG00000163297ENST00000346652-0.7545250-BLCA,UCEC,LUSC,BRCA,COAD,LIHC,READ
ENSG00000273619ENST00000610979FEZ2ENSG00000171055ENST00000414288-0.165568-UCEC,READ
ENSG00000273619ENST00000610979CHP1ENSG00000187446ENST00000560784-0.1140180-COAD,READ
ENSG00000273619ENST00000610979CHP1ENSG00000187446ENST00000560397-0.6783137-COAD,READ
ENSG00000273619ENST00000610979CHP1ENSG00000187446ENST00000560965-0.1152201-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000413364-0.11481-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000571459-0.10981-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000575426-0.10981-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000573332-0.12183-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000572255-0.810017-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000576036-0.8770234-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000574763-0.786029-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000571976-0.44511-COAD,READ
ENSG00000273619ENST00000610979LITAFENSG00000189067ENST00000574703-0.1732501-COAD,READ
ENSG00000273619ENST00000610979CIPCENSG00000198894ENST00000555437-0.1078404-BLCA,COAD,READ
ENSG00000273619ENST00000610979CIPCENSG00000198894ENST00000555611-0.1521275-BLCA,COAD,READ
ENSG00000273619ENST00000610979WWTR1ENSG00000018408ENST00000467467-0.147982-BLCA,UCEC,LUAD,COAD,READ
ENSG00000273619ENST00000610979FAM214AENSG00000047346ENST00000546305-0.13061-COAD,READ
ENSG00000273619ENST00000610979FAM214AENSG00000047346ENST00000570204-0.110964-COAD,READ
ENSG00000273619ENST00000610979SMG6ENSG00000070366ENST00000536871-0.24339-UCEC
ENSG00000273619ENST00000610979LPPENSG00000145012ENST00000415906-0.1274484-BLCA,UCEC,ESCA,COAD,READ
ENSG00000273619ENST00000610979DSTENSG00000151914ENST00000361203-0.407524-UCEC,BRCA,READ
ENSG00000273619ENST00000610979DSTENSG00000151914ENST00000523943-0.1088238-UCEC,BRCA,READ
ENSG00000273619ENST00000610979DSTENSG00000151914ENST00000518935-0.5557486-UCEC,BRCA,READ
ENSG00000273619ENST00000610979FYCO1ENSG00000163820ENST00000438446-0.1367364-BLCA,UCEC,ESCA,LUSC,READ
ENSG00000273619ENST00000610979AFF1ENSG00000172493ENST00000544085-0.6514451-READ
ENSG00000273619ENST00000610979SNX18ENSG00000178996ENST00000326277-0.1750553-UCEC
ENSG00000273619ENST00000610979KLHL5ENSG00000109790ENST00000515612-0.32671-BLCA,READ
ENSG00000273619ENST00000610979PKD2ENSG00000118762ENST00000508588-0.1357213-BLCA,UCEC,BRCA,READ
ENSG00000273619ENST00000610979PKD2ENSG00000118762ENST00000502363-0.5400466-BLCA,UCEC,BRCA,READ
ENSG00000273619ENST00000610979IL6STENSG00000134352ENST00000502326-0.1504356-BLCA,UCEC,ESCA,LUSC,COAD,LIHC,READ
ENSG00000273619ENST00000610979TACC1ENSG00000147526ENST00000518415-0.1358393-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979TACC1ENSG00000147526ENST00000520973-0.1102168-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979TACC1ENSG00000147526ENST00000521866-0.1358393-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979DDR2ENSG00000162733ENST00000367921-0.1193359-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979DDR2ENSG00000162733ENST00000458105-0.2036324-BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ
ENSG00000273619ENST00000610979CCNYL1ENSG00000163249ENST00000420321-0.11927-COAD,READ
ENSG00000273619ENST00000610979CLIP1ENSG00000130779ENST00000540539-0.118264-BLCA
ENSG00000273619ENST00000610979CLIP1ENSG00000130779ENST00000540338-0.2256176-BLCA
ENSG00000273619ENST00000610979FERENSG00000151422ENST00000438717-0.158032-BLCA,UCEC
ENSG00000273619ENST00000610979KIF13BENSG00000197892ENST00000524189-0.11581-LUSC,COAD,READ
ENSG00000273619ENST00000610979KIF13BENSG00000197892ENST00000523130-1.3260378-LUSC,COAD,READ
ENSG00000273619ENST00000610979PPP1CBENSG00000213639ENST00000418910-0.5557490-BLCA,READ
ENSG00000273619ENST00000610979MTMR9ENSG00000104643ENST00000526292-0.1116211-READ
ENSG00000273619ENST00000610979ADGRL2ENSG00000117114ENST00000370721-0.108191-LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979ADGRL2ENSG00000117114ENST00000370727-0.108191-LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979ADGRL2ENSG00000117114ENST00000370725-0.108191-LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979ADGRL2ENSG00000117114ENST00000370723-0.108191-LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979ADGRL2ENSG00000117114ENST00000449420-0.108191-LUSC,BRCA,LUAD,READ
ENSG00000273619ENST00000610979FGD4ENSG00000139132ENST00000531134-0.1541123-ESCA,LUSC,BRCA,READ
ENSG00000273619ENST00000610979FGD4ENSG00000139132ENST00000525053-0.1541123-ESCA,LUSC,BRCA,READ
ENSG00000273619ENST00000610979EPS8ENSG00000151491ENST00000542903-0.1344503-UCEC,BRCA
ENSG00000273619ENST00000610979VCLENSG00000035403ENST00000624354-0.10021-BLCA,UCEC,COAD,READ
ENSG00000273619ENST00000610979CHURC1ENSG00000258289ENST00000548752-0.131952-BLCA,UCEC,READ
ENSG00000273619ENST00000610979CHURC1ENSG00000258289ENST00000547625-0.2220151-BLCA,UCEC,READ
ENSG00000273619ENST00000610979PSD3ENSG00000156011ENST00000521027-0.1159167-READ
ENSG00000273619ENST00000610979LYSMD3ENSG00000176018ENST00000453259-0.1210121-LUSC
ENSG00000273619ENST00000610979SEPTIN10ENSG00000186522ENST00000437928-0.1314146-BLCA,UCEC
ENSG00000273619ENST00000610979SEPTIN10ENSG00000186522ENST00000486678-0.10541-BLCA,UCEC
ENSG00000273619ENST00000610979MIER1ENSG00000198160ENST00000371016-0.12501-COAD,READ
ENSG00000273619ENST00000610979MIER1ENSG00000198160ENST00000371014-0.12501-COAD,READ
ENSG00000273619ENST00000610979MIER1ENSG00000198160ENST00000401042-0.12501-COAD,READ
ENSG00000273619ENST00000610979PCDHGC3ENSG00000240184ENST00000611950-0.2676116-BLCA,UCEC,LUSC,LUAD,COAD
ENSG00000273619ENST00000610979PCDHGC3ENSG00000240184ENST00000617222-0.312255-BLCA,UCEC,LUSC,LUAD,COAD
ENSG00000273619ENST00000610979NCOA4ENSG00000266412ENST00000578454-0.1333276-COAD,READ
ENSG00000273619ENST00000610979NCOA4ENSG00000266412ENST00000579039-0.1331291-COAD,READ
ENSG00000273619ENST00000610979FAM13BENSG00000031003ENST00000425075-0.1500388-BLCA,LUSC,READ
ENSG00000273619ENST00000610979FAM13BENSG00000031003ENST00000420893-0.2365388-BLCA,LUSC,READ

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000273619.1ENST00000610979.1105276593