lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | IDH3A,NEK4,FNIP1,AP5M1,ARID1A,ANTXR1,SENP7,RNF123,TBC1D5,ESYT2,ATM,BECN1,SMCR8,PPP1R12A,GNL3L,POLR1B,TPM3,TMEM161B,ACVR1B,KIAA1109,RIOK3,STAU2,KAT6B,TBC1D15,EDEM1,ITPR2,EIF4G1,FCHO2,CLDND1,MAT2B,LGALS8,PBRM1,TRAK1,ANKRD28,CAMK2D,HEATR6,PSMC1,VPS13B,SRP72,DST,SACM1L,MAN1A2,FGD4,L2HGDH,TRIM5,CELF2,CSNK1G1,ATP11B,PRRC2C,SNX19,MIER1,PHKB,PDPK1,GPRC5B,ACBD5,PHF3,ARFIP1,CEP120,PAK2,ZEB2,CASP8,CPEB4,LONP2,TMEM127,STRN,CALD1,SLFN5,EPS8,GOLIM4,SP100,PHF20,LRP10,KIDINS220,CYLD,CDC27,GTF2H3,TMCO3,SMARCC1,ZC3H12C,BTBD10,APPBP2,DDX6,ETFDH,GANAB,SEC23A,MKLN1,MFSD9,TXNRD1,ITSN2,PSD3,MTMR12,RAB35,RB1CC1,KLF13,SMAD1,ERGIC1,WIPF2,AGFG1,FAM102B,TM7SF3,FBXW8,TANGO6,IPO8,UBE4B,TP53BP2,NDST1,VPS35,YAP1,ARL1,COMMD2,FOXN3,SEC63,GTF3C3,RNF138,UVRAG,MARCHF7,OSBPL8,NCOA4,DDX5,LDLR,MTRR,KIAA1217,TMEM123,AZI2,SELENOT,DCP1A,ACTR2,DCAF7,PLSCR4,VAMP7,RBM7,GPATCH8,CNOT8,ALMS1,ABL2,ICAM1,PPP2CB,MED1,NUP58,HBP1,EIF4G2,IPO9,CD46,NIN,CUL2,GON4L,CAB39,HUWE1,PRKAR1A,SLC25A40,TEP1,ERAP1,YME1L1,BACH1,GOLM2,LPP,NSRP1,DCAF5,TLK1,CPD,RABEP1,FAM13B,NOTCH2,EFL1,FNDC3B,ATF1,TAF1A,FYCO1,SPOPL,POLG,NOMO2,LRP6,ASB8,TMEM87B,FAM168B,PNPO,VPS4B,SNX12,HACD3,CHP1,NEPRO,NAF1,POGLUT3,FRS2,KHNYN,SCP2,EDC4,EHBP1,LARP1,UBXN7,NPEPPS,ACTN1,RCHY1,BZW1,DCTN4,SLAIN2,PPAT,PKN2,GPATCH2L,PDXDC1,ARIH1,FNDC3A,PUM1,OS9,SEC24B,PDE4DIP,RABL3,FAM91A1,KMT2D,CTNNB1,BCL2L13,FUBP1,PKD2,AP3D1,ANAPC1,MON2,MAPK14,RNF111,TP53BP1,SSR3,PPIP5K2,IFNAR2,MOB1B,USP32,ZDHHC5,VCL,SNX30,G3BP1,NCBP1,WBP11,MORF4L1,PIP4K2A,STAT3,SLC25A24,POLR1A,PRMT5,TMEM43,CCNI,DDX3X,IPO5,SLC25A15,ASXL2,NIPBL,USP47,TARS1,POLR2B,FRYL,CYRIB,CEP350,PIKFYVE,TC2N,DDHD2,ACVR1,MYOF,HSPG2,EIF3C,TIPARP,SLC35A5,MAP3K3,RAB18,ATP2B4,SLC10A7,DNAJC13,CFL2,MED13,RAP1B,KDSR,ARF3,DYRK2,EP400,USP46,ERO1A,XRN1,SMG6,CEMIP2,SPRING1,KIAA0232,PKP2,NUP98,CFH,KIAA0586,DDX60,TRIM23,ST13,ATP11A,ARHGEF18,PLBD2,TRIP12,AKAP10,AKT3,PSMD5,GTF2A1,CHD9,TFIP11,GGCX,PRKAA1,MYO18A,SOS1,SMAD5,SLC12A6,MORC3,CSNK1A1,NDFIP2,ZEB1,TUBGCP3,GOSR1,CTNNA1,OSBPL1A,MIEF1,UGGT1,RPE,VRK2,GCC2,TAF2,CAST,SLC25A30,SMIM15,TRIM33,F2R,PIP5K1A,PDCD10,HEATR5A,MED21,FEM1B,PAFAH1B1,TMBIM6,MPRIP,DOCK1,NEMF,CCNK,CTDSP2,NCOR1,EMC1,WSB2,TAF5L,SCAF11,PGM2,CNOT1,SLC16A4,ARL6IP5,NF1,CAMSAP2,MBP,SLC35E1,FEZ2,ERLIN1,MYH9,SLC11A2,USP15,UBE2K,FCF1,SH3PXD2A,NUP155,YPEL2,WWTR1,DNAJC16,FAM214A,SECISBP2L,UBR1,DAG1,ACTR3,SEPTIN10,PCDHGC3,NOP9,CHD8,TAOK3,PIP4K2C,RAB3GAP1,TSR1,MED14,SLC4A7,HPS3,STAMBP,TOX4,ADAM10,KIAA0100,PRDM2,ARHGAP21,IARS1,SUCLG2,UBE4A,VPS26A,CDV3,ERBIN,DNAJC14,PHACTR2,ATL2,CAP1,ITPRIPL2,ENTPD4,IPO11,ZC3H11A,ATF7,WASF2,VGLL4,MACF1,SH3GLB1,NBR1,RIC1,NUMB,MARF1,SPRED2,CUL4B,KTN1,C5orf24,ATP2C1,MCCC2,ILK,PTPN21,RRN3,SGMS1,PTPN4,FARP2,SNRK,DYNC1I2,DOCK7,GLS,ZDHHC17,DAZAP2,RFFL,CLIP1,SART3,NSUN3,ARNT,CORO1C,RAD50,RNF19B,API5,ATF2,NCOA2,PTPRB,RC3H2,UBE3B,SNAP23,STK38L,MAPK1,RNF169,UBR5,CNIH1,ITPRID2,PRKAR2A,TBC1D2B,RAB11FIP1,TLR3,BRCC3,USP9X,MAST4,ROCK2,ZBED6,RHBDD1,DESI2,UEVLD,MTMR1,TNS1,TGFBRAP1,DDR2,RREB1,WNK1,SSH1,SUN2,RAB27A,RBM41,CHURC1,TMLHE,KLHL5,EPS15,CCNYL1,OSBPL9,LYSMD3,TIRAP,CCNG1,NID2,PPARA,GALC,SNX2,ANTXR2,KIF2A,PLS1,REST,EIF3L,SOS2,C21orf91,CS,BACE1,PCYT1A,POLK,CCDC91,ACTN4,BRF2,DCAF17,IL6ST,AFF1,BLOC1S6,ABCE1,MRTFB,USP8,PICALM,AGO2,FAM114A2,FYTTD1,SNX18,ITFG1,ABCD3,USP14,HECTD4,MAGT1,CPSF2,RAB2A,SPG11,FAM172A,ATP2B1,INPP4A,GLYR1,RRM2B,IBTK,FER,BAZ1A,TANK,CREB1,NRDC,ATL3,RAB6A,KPNB1,GSK3B,VPS26C,QKI,TAX1BP1,AEBP2,OXSR1,RNF4,NT5C2,ATP6V1B2,ZMYND11,RALGAPB,CCNG2,HIPK1,LIMS1,QTRT2,TACC1,EPB41,SPIRE1,PI4KA,PSEN1,CEP104,INTS6,SMAD4,ZMYM5,PTPN11,SCYL2,LITAF,MID2,ADGRL2,POLR2A,ANKFY1,TLE4,DNAJC11,CLTC,ATRN,NCOA1,SDHC,ATP2A2,SON,PIK3C3,LZIC,ZC3H13,CCDC47,BIRC2,PTPRG,RAB31,HSPA8,PTPN12,M6PR,SNX29,ABCB7,APAF1,TAF1,PCNX1,DMXL2,UBR4,CDC42SE2,ZNF720,IQGAP1,SMARCA2,SLMAP,PLEKHA5,CLCN3,CMTR2,SESTD1,CIPC,MAN2A1,KLF7,STRAP,RFX5,ARHGAP5,CLCC1,MPDZ,CSNK2A1,PPP1CB,FTO,COPB2,FAN1,STIM1,SEC14L1,SF3B1,ADD1,ESYT1,ARSB,MTMR9,KITLG,ZFYVE1,PDLIM5,KIF13B,VEZT,DYNC1LI2,KBTBD4,MIDEAS,ZNF106,APP,RASA1,STT3A,CERT1,PTPN9,MAP4,SF3A1,ARMC8,PHC3,SEPTIN2,SNX1,COG6,SIK3,BCL9L,ABHD5,RSRC1,TAF1B,SERINC3,DOCK9,NCOA3,SYNJ1,PIGN,SBF2,ITGA6,ATP9B,ABCA1,ERC1,TNPO1,RHOT1,SNX4,NEK7,FAM160B1,RO60,MAPK9,HEATR5B,BIRC6,ACADM,SEC31A,CYFIP1,ZNF28,TMEM184C,DENND5A,BDP1,RALB,SYNRG,EVC,USP10,AFAP1,AHNAK,MCFD2,NDUFS1,NSD1,SLC39A6 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000273619 | ENST00000610979 | exon_skip_291984 | chr17:59119318-59119495 | -16.65 | -0.1252 | SKA2 | ENST00000330137 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_514339 | chrX:23713134-23713208 | -7.62 | -0.1314 | ACOT9 | ENST00000336430 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_5818 | chr1:45568484-45568684 | -27.83 | -0.1435 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_6419 | chr1:51756319-51756358 | -9.58 | -0.3685 | OSBPL9 | ENST00000428468 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_303345 | chr19:17227839-17228005 | -25.72 | -0.1799 | OCEL1 | ENST00000215061 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_353954 | chr20:63875815-63875875 | -8.20 | -0.1491 | TPD52L2 | ENST00000346249 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_382458 | chr3:38131595-38131638 | -8.09 | -0.2311 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_436035 | chr5:79656957-79657001 | -9.67 | -0.2614 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_494079 | chr8:144099080-144099205 | -23.70 | -0.1927 | SHARPIN | ENST00000398712 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_41813 | chr10:68337857-68337996 | -22.03 | -0.1620 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_66482 | chr11:126274926-126275021 | -14.97 | -0.1576 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_92074 | chr12:50142052-50142110 | -8.52 | -0.1521 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_97655 | chr12:120579773-120579923 | -15.15 | -0.1273 | POP5 | ENST00000357500 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_123601 | chr15:74897010-74897219 | -24.12 | -0.1188 | MPI | ENST00000352410 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_291980 | chr17:59119318-59119495 | -16.65 | -0.1252 | SKA2 | ENST00000330137 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_324294 | chr2:27774423-27774530 | -13.88 | -0.1374 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_326885 | chr2:74490024-74490127 | -20.58 | -0.2673 | TTC31 | ENST00000233623 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_356108 | chr20:34740362-34743341 | -64.51 | -0.1052 | NCOA6 | ENST00000359003,ENST00000374796 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_442657 | chr5:74730259-74730398 | -16.09 | -0.1247 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_445390 | chr5:150403120-150403312 | -26.92 | -0.1447 | CD74 | ENST00000009530 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_481699 | chr8:19824802-19824972 | -14.46 | -0.1071 | INTS10 | ENST00000397977 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_300022 | chr18:79919183-79919400 | -29.28 | -0.1627 | PQLC1 | ENST00000397778 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_319223 | chr19:43526200-43526349 | -25.94 | -0.2470 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_326741 | chr2:73946718-73946906 | -20.08 | -0.1109 | DGUOK | ENST00000264093 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_358606 | chr20:63202286-63203807 | -68.75 | -0.1118 | YTHDF1 | ENST00000370339 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_356643 | chr20:35632162-35632234 | -9.14 | -0.1474 | CPNE1 | ENST00000352393,ENST00000397443 | In-frame | ENSG00000273619 | ENST00000610979 | exon_skip_377198 | chr3:123130479-123130616 | -25.97 | -0.1938 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_501752 | chr9:136992924-136992974 | -11.17 | -0.2539 | PAXX | ENST00000371620 | Frame-shift | ENSG00000273619 | ENST00000610979 | exon_skip_371367 | chr3:9697710-9697866 | -20.02 | -0.1483 | MTMR14 | ENST00000296003 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000273619 | ENST00000610979 | DOCK9 | ENSG00000088387 | ENST00000627024 | -0.1026 | 470 | - | LUSC | ENSG00000273619 | ENST00000610979 | DOCK9 | ENSG00000088387 | ENST00000427887 | -0.1171 | 486 | - | LUSC | ENSG00000273619 | ENST00000610979 | DOCK9 | ENSG00000088387 | ENST00000479769 | -0.1019 | 275 | - | LUSC | ENSG00000273619 | ENST00000610979 | SOS2 | ENSG00000100485 | ENST00000543680 | -0.2037 | 511 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | SOS2 | ENSG00000100485 | ENST00000556452 | -0.1223 | 71 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | CERT1 | ENSG00000113163 | ENST00000261415 | -0.1839 | 389 | - | LUSC | ENSG00000273619 | ENST00000610979 | YAP1 | ENSG00000137693 | ENST00000531439 | -2.1300 | 359 | - | UCEC,BRCA | ENSG00000273619 | ENST00000610979 | YAP1 | ENSG00000137693 | ENST00000524575 | -0.1044 | 79 | - | UCEC,BRCA | ENSG00000273619 | ENST00000610979 | NEK7 | ENSG00000151414 | ENST00000367383 | -0.5120 | 452 | - | UCEC,LUSC,READ | ENSG00000273619 | ENST00000610979 | FCHO2 | ENSG00000157107 | ENST00000287761 | -0.1912 | 1 | - | LUSC,READ | ENSG00000273619 | ENST00000610979 | MORC3 | ENSG00000159256 | ENST00000549948 | -0.1088 | 1 | - | UCEC | ENSG00000273619 | ENST00000610979 | MORC3 | ENSG00000159256 | ENST00000552581 | -0.1004 | 135 | - | UCEC | ENSG00000273619 | ENST00000610979 | SLMAP | ENSG00000163681 | ENST00000495364 | -0.2123 | 40 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | SLMAP | ENSG00000163681 | ENST00000494088 | -0.1183 | 335 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | SNRK | ENSG00000163788 | ENST00000454177 | -0.1100 | 93 | - | BLCA,UCEC,LUSC,LUAD,READ | ENSG00000273619 | ENST00000610979 | SNRK | ENSG00000163788 | ENST00000437827 | -0.1176 | 178 | - | BLCA,UCEC,LUSC,LUAD,READ | ENSG00000273619 | ENST00000610979 | TLR3 | ENSG00000164342 | ENST00000504367 | -0.1880 | 626 | - | LUSC,BRCA,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | PLSCR4 | ENSG00000114698 | ENST00000446574 | -0.1002 | 389 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.1484 | 58 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | SCP2 | ENSG00000116171 | ENST00000478274 | -0.1237 | 1 | - | COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | ACADM | ENSG00000117054 | ENST00000420607 | -0.3009 | 104 | - | COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1348 | 90 | - | COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | ABCD3 | ENSG00000117528 | ENST00000315713 | -0.1159 | 180 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | PDLIM5 | ENSG00000163110 | ENST00000512274 | -0.1145 | 152 | - | BLCA,UCEC,LIHC | ENSG00000273619 | ENST00000610979 | PDLIM5 | ENSG00000163110 | ENST00000513341 | -0.2855 | 1 | - | BLCA,UCEC,LIHC | ENSG00000273619 | ENST00000610979 | PDLIM5 | ENSG00000163110 | ENST00000506632 | -0.1166 | 27 | - | BLCA,UCEC,LIHC | ENSG00000273619 | ENST00000610979 | ABCA1 | ENSG00000165029 | ENST00000423487 | -0.2350 | 1 | - | BRCA,READ | ENSG00000273619 | ENST00000610979 | ABCA1 | ENSG00000165029 | ENST00000374733 | -0.1369 | 172 | - | BRCA,READ | ENSG00000273619 | ENST00000610979 | ETFDH | ENSG00000171503 | ENST00000307738 | -0.1074 | 480 | - | ESCA,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | SUCLG2 | ENSG00000172340 | ENST00000493112 | -0.1031 | 168 | - | ESCA,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | PLS1 | ENSG00000120756 | ENST00000497002 | -0.2193 | 63 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.1551 | 181 | - | COAD | ENSG00000273619 | ENST00000610979 | KITLG | ENSG00000049130 | ENST00000357116 | -0.1121 | 271 | - | BLCA,COAD,READ | ENSG00000273619 | ENST00000610979 | PPP1R12A | ENSG00000058272 | ENST00000550299 | -0.1736 | 13 | - | BLCA,UCEC,READ | ENSG00000273619 | ENST00000610979 | RAB27A | ENSG00000069974 | ENST00000564609 | -0.1475 | 193 | - | BLCA,ESCA,LUSC,COAD,READ | ENSG00000273619 | ENST00000610979 | RAB27A | ENSG00000069974 | ENST00000569493 | -0.1523 | 193 | - | BLCA,ESCA,LUSC,COAD,READ | ENSG00000273619 | ENST00000610979 | PTPN21 | ENSG00000070778 | ENST00000553531 | -0.1088 | 6 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | PTPN21 | ENSG00000070778 | ENST00000536337 | -0.1170 | 1 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | ATP2B1 | ENSG00000070961 | ENST00000393164 | -0.1390 | 425 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | SEC24B | ENSG00000138802 | ENST00000504968 | -0.1180 | 38 | - | LIHC | ENSG00000273619 | ENST00000610979 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.1992 | 1 | - | LIHC | ENSG00000273619 | ENST00000610979 | ARL6IP5 | ENSG00000144746 | ENST00000485444 | -0.1453 | 21 | - | LUSC | ENSG00000273619 | ENST00000610979 | SLC25A24 | ENSG00000085491 | ENST00000569674 | -0.1021 | 1 | - | READ | ENSG00000273619 | ENST00000610979 | RIOK3 | ENSG00000101782 | ENST00000577501 | -0.1094 | 87 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | ZNF106 | ENSG00000103994 | ENST00000569648 | -0.1947 | 167 | - | BLCA,LUSC,BRCA,LUAD | ENSG00000273619 | ENST00000610979 | PPP2CB | ENSG00000104695 | ENST00000520334 | -0.1450 | 101 | - | READ | ENSG00000273619 | ENST00000610979 | VPS4B | ENSG00000119541 | ENST00000591519 | -0.1419 | 169 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | AHNAK | ENSG00000124942 | ENST00000530124 | -0.1483 | 284 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | AHNAK | ENSG00000124942 | ENST00000257247 | -0.1186 | 238 | - | BLCA,UCEC,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | RNF138 | ENSG00000134758 | ENST00000577999 | -0.1179 | 249 | - | READ | ENSG00000273619 | ENST00000610979 | ITPRID2 | ENSG00000138434 | ENST00000451836 | -0.1252 | 1 | - | LUAD,READ | ENSG00000273619 | ENST00000610979 | SECISBP2L | ENSG00000138593 | ENST00000561428 | -0.1396 | 245 | - | ESCA,LUSC,LUAD,READ | ENSG00000273619 | ENST00000610979 | CCNG2 | ENSG00000138764 | ENST00000395640 | -0.1126 | 1 | - | READ | ENSG00000273619 | ENST00000610979 | OSBPL1A | ENSG00000141447 | ENST00000357041 | -0.2517 | 417 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | OSBPL1A | ENSG00000141447 | ENST00000578013 | -0.5764 | 101 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | OSBPL1A | ENSG00000141447 | ENST00000578055 | -0.1196 | 436 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | OSBPL1A | ENSG00000141447 | ENST00000584119 | -0.1183 | 1 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | OSBPL1A | ENSG00000141447 | ENST00000582645 | -0.1213 | 1 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | CAMK2D | ENSG00000145349 | ENST00000379773 | -0.1042 | 73 | - | READ | ENSG00000273619 | ENST00000610979 | CDC42SE2 | ENSG00000158985 | ENST00000502582 | -0.1119 | 30 | - | READ | ENSG00000273619 | ENST00000610979 | ANTXR2 | ENSG00000163297 | ENST00000404191 | -0.2360 | 255 | - | BLCA,UCEC,LUSC,BRCA,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | ANTXR2 | ENSG00000163297 | ENST00000346652 | -0.7545 | 250 | - | BLCA,UCEC,LUSC,BRCA,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | FEZ2 | ENSG00000171055 | ENST00000414288 | -0.1655 | 68 | - | UCEC,READ | ENSG00000273619 | ENST00000610979 | CHP1 | ENSG00000187446 | ENST00000560784 | -0.1140 | 180 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | CHP1 | ENSG00000187446 | ENST00000560397 | -0.6783 | 137 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | CHP1 | ENSG00000187446 | ENST00000560965 | -0.1152 | 201 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000413364 | -0.1148 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000571459 | -0.1098 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000575426 | -0.1098 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000573332 | -0.1218 | 3 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000572255 | -0.8100 | 17 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000576036 | -0.8770 | 234 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000574763 | -0.7860 | 29 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000571976 | -0.4451 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | LITAF | ENSG00000189067 | ENST00000574703 | -0.1732 | 501 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | CIPC | ENSG00000198894 | ENST00000555437 | -0.1078 | 404 | - | BLCA,COAD,READ | ENSG00000273619 | ENST00000610979 | CIPC | ENSG00000198894 | ENST00000555611 | -0.1521 | 275 | - | BLCA,COAD,READ | ENSG00000273619 | ENST00000610979 | WWTR1 | ENSG00000018408 | ENST00000467467 | -0.1479 | 82 | - | BLCA,UCEC,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | FAM214A | ENSG00000047346 | ENST00000546305 | -0.1306 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | FAM214A | ENSG00000047346 | ENST00000570204 | -0.1109 | 64 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.2433 | 9 | - | UCEC | ENSG00000273619 | ENST00000610979 | LPP | ENSG00000145012 | ENST00000415906 | -0.1274 | 484 | - | BLCA,UCEC,ESCA,COAD,READ | ENSG00000273619 | ENST00000610979 | DST | ENSG00000151914 | ENST00000361203 | -0.4075 | 24 | - | UCEC,BRCA,READ | ENSG00000273619 | ENST00000610979 | DST | ENSG00000151914 | ENST00000523943 | -0.1088 | 238 | - | UCEC,BRCA,READ | ENSG00000273619 | ENST00000610979 | DST | ENSG00000151914 | ENST00000518935 | -0.5557 | 486 | - | UCEC,BRCA,READ | ENSG00000273619 | ENST00000610979 | FYCO1 | ENSG00000163820 | ENST00000438446 | -0.1367 | 364 | - | BLCA,UCEC,ESCA,LUSC,READ | ENSG00000273619 | ENST00000610979 | AFF1 | ENSG00000172493 | ENST00000544085 | -0.6514 | 451 | - | READ | ENSG00000273619 | ENST00000610979 | SNX18 | ENSG00000178996 | ENST00000326277 | -0.1750 | 553 | - | UCEC | ENSG00000273619 | ENST00000610979 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.3267 | 1 | - | BLCA,READ | ENSG00000273619 | ENST00000610979 | PKD2 | ENSG00000118762 | ENST00000508588 | -0.1357 | 213 | - | BLCA,UCEC,BRCA,READ | ENSG00000273619 | ENST00000610979 | PKD2 | ENSG00000118762 | ENST00000502363 | -0.5400 | 466 | - | BLCA,UCEC,BRCA,READ | ENSG00000273619 | ENST00000610979 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.1504 | 356 | - | BLCA,UCEC,ESCA,LUSC,COAD,LIHC,READ | ENSG00000273619 | ENST00000610979 | TACC1 | ENSG00000147526 | ENST00000518415 | -0.1358 | 393 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | TACC1 | ENSG00000147526 | ENST00000520973 | -0.1102 | 168 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | TACC1 | ENSG00000147526 | ENST00000521866 | -0.1358 | 393 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | DDR2 | ENSG00000162733 | ENST00000367921 | -0.1193 | 359 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | DDR2 | ENSG00000162733 | ENST00000458105 | -0.2036 | 324 | - | BLCA,UCEC,ESCA,LUSC,BRCA,LUAD,COAD,READ | ENSG00000273619 | ENST00000610979 | CCNYL1 | ENSG00000163249 | ENST00000420321 | -0.1192 | 7 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | CLIP1 | ENSG00000130779 | ENST00000540539 | -0.1182 | 64 | - | BLCA | ENSG00000273619 | ENST00000610979 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.2256 | 176 | - | BLCA | ENSG00000273619 | ENST00000610979 | FER | ENSG00000151422 | ENST00000438717 | -0.1580 | 32 | - | BLCA,UCEC | ENSG00000273619 | ENST00000610979 | KIF13B | ENSG00000197892 | ENST00000524189 | -0.1158 | 1 | - | LUSC,COAD,READ | ENSG00000273619 | ENST00000610979 | KIF13B | ENSG00000197892 | ENST00000523130 | -1.3260 | 378 | - | LUSC,COAD,READ | ENSG00000273619 | ENST00000610979 | PPP1CB | ENSG00000213639 | ENST00000418910 | -0.5557 | 490 | - | BLCA,READ | ENSG00000273619 | ENST00000610979 | MTMR9 | ENSG00000104643 | ENST00000526292 | -0.1116 | 211 | - | READ | ENSG00000273619 | ENST00000610979 | ADGRL2 | ENSG00000117114 | ENST00000370721 | -0.1081 | 91 | - | LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | ADGRL2 | ENSG00000117114 | ENST00000370727 | -0.1081 | 91 | - | LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | ADGRL2 | ENSG00000117114 | ENST00000370725 | -0.1081 | 91 | - | LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | ADGRL2 | ENSG00000117114 | ENST00000370723 | -0.1081 | 91 | - | LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | ADGRL2 | ENSG00000117114 | ENST00000449420 | -0.1081 | 91 | - | LUSC,BRCA,LUAD,READ | ENSG00000273619 | ENST00000610979 | FGD4 | ENSG00000139132 | ENST00000531134 | -0.1541 | 123 | - | ESCA,LUSC,BRCA,READ | ENSG00000273619 | ENST00000610979 | FGD4 | ENSG00000139132 | ENST00000525053 | -0.1541 | 123 | - | ESCA,LUSC,BRCA,READ | ENSG00000273619 | ENST00000610979 | EPS8 | ENSG00000151491 | ENST00000542903 | -0.1344 | 503 | - | UCEC,BRCA | ENSG00000273619 | ENST00000610979 | VCL | ENSG00000035403 | ENST00000624354 | -0.1002 | 1 | - | BLCA,UCEC,COAD,READ | ENSG00000273619 | ENST00000610979 | CHURC1 | ENSG00000258289 | ENST00000548752 | -0.1319 | 52 | - | BLCA,UCEC,READ | ENSG00000273619 | ENST00000610979 | CHURC1 | ENSG00000258289 | ENST00000547625 | -0.2220 | 151 | - | BLCA,UCEC,READ | ENSG00000273619 | ENST00000610979 | PSD3 | ENSG00000156011 | ENST00000521027 | -0.1159 | 167 | - | READ | ENSG00000273619 | ENST00000610979 | LYSMD3 | ENSG00000176018 | ENST00000453259 | -0.1210 | 121 | - | LUSC | ENSG00000273619 | ENST00000610979 | SEPTIN10 | ENSG00000186522 | ENST00000437928 | -0.1314 | 146 | - | BLCA,UCEC | ENSG00000273619 | ENST00000610979 | SEPTIN10 | ENSG00000186522 | ENST00000486678 | -0.1054 | 1 | - | BLCA,UCEC | ENSG00000273619 | ENST00000610979 | MIER1 | ENSG00000198160 | ENST00000371016 | -0.1250 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | MIER1 | ENSG00000198160 | ENST00000371014 | -0.1250 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | MIER1 | ENSG00000198160 | ENST00000401042 | -0.1250 | 1 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | PCDHGC3 | ENSG00000240184 | ENST00000611950 | -0.2676 | 116 | - | BLCA,UCEC,LUSC,LUAD,COAD | ENSG00000273619 | ENST00000610979 | PCDHGC3 | ENSG00000240184 | ENST00000617222 | -0.3122 | 55 | - | BLCA,UCEC,LUSC,LUAD,COAD | ENSG00000273619 | ENST00000610979 | NCOA4 | ENSG00000266412 | ENST00000578454 | -0.1333 | 276 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | NCOA4 | ENSG00000266412 | ENST00000579039 | -0.1331 | 291 | - | COAD,READ | ENSG00000273619 | ENST00000610979 | FAM13B | ENSG00000031003 | ENST00000425075 | -0.1500 | 388 | - | BLCA,LUSC,READ | ENSG00000273619 | ENST00000610979 | FAM13B | ENSG00000031003 | ENST00000420893 | -0.2365 | 388 | - | BLCA,LUSC,READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273619.1 | ENST00000610979.1 | 105 | 276 | 593 |
|