lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | SMAD1,RNF169,TBC1D2B,MACF1,MYCBP2,SH3GLB1,RAB11FIP1,QKI,EIF3L,HBP1,RAB31,TRIM22,CSNK1A1,M6PR,ACVR1,CAB39,ILK,CPEB4,NT5C2,PDLIM5,ZMYND11,RNF111,TEP1,RDX,DYNC1LI2,KBTBD4,BRPF3,SLFN5,ELF1,AFF1,SEC24D,ACTR3,IQGAP1,DYNC1I2,DOCK7,MEF2D,SSH1,KIF13A,SUN2,PTPN11,CLIP1,KIAA1109,STAT3,ITGB1,FBXW11,KLHL5,STK24,BCL9L,ANKFY1,DDX60,CTDSP2,DDX3X,ASAP1,ARIH1,FYCO1,DOCK9,CAP1,ITPRIPL2,TRIP12,KLF13 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000273391 | ENST00000608266 | FYCO1 | ENSG00000163820 | ENST00000438446 | -0.1272 | 1 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | KLHL5 | ENSG00000109790 | ENST00000504108 | -0.1275 | 65 | - | BLCA | ENSG00000273391 | ENST00000608266 | KLHL5 | ENSG00000109790 | ENST00000381930 | -0.1346 | 279 | - | BLCA | ENSG00000273391 | ENST00000608266 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.2617 | 17 | - | BLCA | ENSG00000273391 | ENST00000608266 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.9870 | 407 | - | BLCA | ENSG00000273391 | ENST00000608266 | PDLIM5 | ENSG00000163110 | ENST00000512274 | -0.1694 | 84 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | PDLIM5 | ENSG00000163110 | ENST00000504489 | -0.1209 | 1 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000532063 | -0.1178 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000299421 | -0.1286 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000537806 | -0.1316 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000420936 | -0.1337 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000528995 | -0.1286 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000396751 | -0.1286 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | ILK | ENSG00000166333 | ENST00000526318 | -0.1227 | 211 | - | BLCA,UCEC,LUSC | ENSG00000273391 | ENST00000608266 | BRPF3 | ENSG00000096070 | ENST00000532330 | -0.1011 | 1 | - | KIRP | ENSG00000273391 | ENST00000608266 | BRPF3 | ENSG00000096070 | ENST00000441123 | -0.1011 | 1 | - | KIRP | ENSG00000273391 | ENST00000608266 | KIF13A | ENSG00000137177 | ENST00000378814 | -0.1995 | 1 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | KIF13A | ENSG00000137177 | ENST00000502297 | -0.1995 | 1 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | KIF13A | ENSG00000137177 | ENST00000259711 | -0.1452 | 1 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | KIF13A | ENSG00000137177 | ENST00000378843 | -0.1452 | 1 | - | BLCA,UCEC | ENSG00000273391 | ENST00000608266 | KIF13A | ENSG00000137177 | ENST00000378826 | -0.1452 | 1 | - | BLCA,UCEC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273391.1 | ENST00000608266.1 | 80 | 25 | 267 |
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