lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000273355 | ENST00000610185 | exon_skip_81540 | chr12:42384939-42384996 | -9.33 | -0.2073 | PPHLN1 | ENST00000395568 | In-frame | ENSG00000273355 | ENST00000610185 | exon_skip_115295 | chr14:92704639-92704707 | -7.95 | -0.1303 | LGMN | ENST00000334869,ENST00000393218 | Frame-shift | ENSG00000273355 | ENST00000610185 | exon_skip_74009 | chr11:64773429-64773505 | -8.93 | -0.3883 | SF1 | ENST00000377390 | Frame-shift | ENSG00000273355 | ENST00000610185 | exon_skip_111863 | chr14:23565815-23565892 | -11.83 | -0.1972 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000273355 | ENST00000610185 | exon_skip_131398 | chr15:101286213-101286293 | -9.11 | -0.1320 | SNRPA1 | ENST00000254193 | Frame-shift | ENSG00000273355 | ENST00000610185 | exon_skip_287763 | chr17:28884224-28884315 | -15.13 | -0.1719 | FLOT2 | ENST00000394908 | Frame-shift | ENSG00000273355 | ENST00000610185 | exon_skip_382458 | chr3:38131595-38131638 | -7.93 | -0.2832 | ACAA1 | ENST00000333167 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000273355 | hsa-mir-22 | ENST00000610185 | chr18:813656-813732 | 179.00 | -59.46 | 77 | NA | ENSG00000273355 | hsa-mir-22 | ENST00000610185 | chr18:813504-813597 | 163.00 | -66.92 | 88 | NA | ENSG00000273355 | hsa-mir-22 | ENST00000610185 | chr18:813292-813369 | 154.00 | -75.91 | 82 | NA | ENSG00000273355 | hsa-mir-22 | ENST00000610185 | chr18:813387-813474 | 150.00 | -61.80 | 81 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,ATAT1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,USP21 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,ACYP1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,EHMT2 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,RBM4B | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,PDE9A | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,KRBOX4 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,VEZF1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,DCAKD | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,SMARCE1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,PHF10 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,UBE2E3 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,CTPS2 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,RBMX | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,RGL2 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,CRYZL1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,PRR3 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,ING4 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,PLXNB1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,ZMYM3 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,WBP1 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,LRRC41 | KICH,TGCT,CHOL,KIRP,LIHC | ENSG00000273355 | RP11-672L10.6,hsa-mir-22,SMAD4 | KICH,TGCT,CHOL,KIRP,LIHC |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273355.1 | ENST00000610185.1 | 38 | 429 | 313 |
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