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lncRNA: ENSG00000273311

Summary for DGCR11

Gene summary

Gene information	Ensembl ID	ENSG00000273311
	Gene symbol	DGCR11
	Gene name	DiGeorge syndrome critical region gene 11
	HGNC	17226
	Entrez ID	25786
	Gene type	sense_intronic
	Synonyms	22q11.21\|DGCR11
	UniProtAcc

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Structure and expression level for DGCR11

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000273311	6.424052e+01	1.112881e+00	1.453454e-01	7.656802e+00	1.910000e-14	1.900000e-13	UP	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000273311	5.268681e-01	2.006746e-04	CHOL	5.083353e-04

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lncRNA-Protein interaction for DGCR11

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for DGCR11

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for DGCR11

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for DGCR11

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_380125	ENSG00000273311.1	chr22	19048025	-	sense_intronic	DGCR11	ENST00000609958.1	sense_intronic	DGCR11-001
LncEditing_380126	ENSG00000273311.1	chr22	19048027	-	sense_intronic	DGCR11	ENST00000609958.1	sense_intronic	DGCR11-001
LncEditing_380127	ENSG00000273311.1	chr22	19048030	-	sense_intronic	DGCR11	ENST00000609958.1	sense_intronic	DGCR11-001

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000273311	LncEditing_380125	ESCA	chr22_19048025_-	1.434741e+00	9.775873e-01	1.806706e+00	3.453006e+00	5.543757e-04	6.462577e-04	UP
ENSG00000273311	LncEditing_380126	ESCA	chr22_19048027_-	1.489220e+00	9.767426e-01	1.643368e+00	3.724446e+00	1.957449e-04	2.379822e-04	UP
ENSG00000273311	LncEditing_380127	ESCA	chr22_19048030_-	1.343513e+00	9.642783e-01	2.089911e+00	3.642507e+00	2.699961e-04	3.252367e-04	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000273311	LncEditing_380127	-5.190723e-01	2.770567e-03	9.737139e-03

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000273311	DGCR11	rs5993493:19056979:C:T	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2107299:19062885:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993504:19064840:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993505:19065006:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993508:19065430:G:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs1557847:19062353:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs807749:19105966:G:T	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs715598:19030832:C:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs811107:19106120:A:C:+	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs6623:19025381:C:T	1	PRAD	0
ENSG00000273311	DGCR11	rs2793075:19078607:C:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800985:19078409:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2854655:19078521:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2793073:19078762:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2793072:19079058:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993488:19050635:G:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993512:19071514:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs28615873:19068227:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs111714992:19071377:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2027794:19073763:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2027795:19073924:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238755:19074753:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238742:19049278:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs11913040:19063304:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs6518518:19038847:C:T	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs8138035:19040775:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993482:19040878:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993494:19057188:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238750:19057723:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993502:19063634:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993507:19065109:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs6518517:19030336:C:T:-	0		9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG
ENSG00000273311	DGCR11	rs5993485:19042822:G:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993483:19041896:C:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993484:19042542:C:T	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2096377:19098259:T:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800964:19089187:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800966:19090070:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800967:19090249:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2525039:19090267:G:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2189491:19094327:A:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs111427599:19050599:T:TCCATGTC	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238748:19051381:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2239396:19053290:C:G	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800980:19077927:A:G:-	0		9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG
ENSG00000273311	DGCR11	rs2154188:19092222:C:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2854657:19079800:G:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs66907388:19080501:AAGAAG:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800990:19080674:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2153604:19081239:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2525036:19082535:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993523:19082956:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993524:19083107:G:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2525037:19083678:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2793064:19084689:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2525034:19080300:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238747:19050110:A:G	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs8138482:19070343:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800958:19086520:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2793063:19087067:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs807753:19108548:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs807750:19107437:C:T:-	0		7	PRAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG
ENSG00000273311	DGCR11	rs376298619:19083250:C:CTTTT	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs715539:19034079:A:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,UCEC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800970:19093033:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs6518516:19030113:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs58088390:19078324:G:GA	7	PRAD,LUAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238736:19046735:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2871009:19032444:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5992354:19033532:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs59339548:19033747:AT:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2240102:19035697:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2072123:19026613:A:G	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5992353:19026877:C:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2073774:19028480:T:C	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs6518515:19030007:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2074003:19036739:C:G:-	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993480:19039706:G:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5844370:19032878:T:TAAAC	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2871010:19032965:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2793069:19080899:C:A	10	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993525:19083153:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs1001896:19032215:G:A	9	PRAD,LUAD,KIRP,KIRC,HNSC,SARC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs1051248:19033768:G:C	9	PRAD,LUAD,KIRP,KIRC,HNSC,SARC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2107297:19046943:T:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993501:19063144:T:C	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs11912407:19063374:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5993506:19065099:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs370757814:19069697:GACT:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs9617766:19071690:G:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800954:19086183:C:T:-	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2854659:19083552:A:T	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs58700371:19041740:G:GT	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs715590:19030722:C:T:-	0		9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG
ENSG00000273311	DGCR11	rs2238738:19047776:C:A	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2283641:19027597:C:T	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs9618453:19028320:C:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800969:19077594:C:T:+	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs35223547:19080874:GA:G	8	PRAD,LUAD,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs5992356:19041699:C:T:-	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs807752:19108098:G:T	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2105421:19097680:C:G:+	0		9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG
ENSG00000273311	DGCR11	rs62223868:19109609:A:C	9	PRAD,LUAD,KIRP,KIRC,HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2238746:19050010:A:G	9	PRAD,LUAD,KIRP,COAD,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs111289036:19110574:C:CTGTA	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800982:19099373:A:T	7	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs807757:19113028:G:A	8	PRAD,LUAD,KIRP,KIRC,HNSC,THCA,BRCA,LGG	0
ENSG00000273311	DGCR11	rs2800986:19100777:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs807745:19104787:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs11912290:19040446:C:T	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs2854656:19079241:A:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs2793070:19079608:C:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5992367:19082991:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993479:19034833:T:C	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs11913366:19052189:C:T	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993491:19056019:C:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993496:19058752:A:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993497:19059053:C:T	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993516:19073612:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs807746:19104877:T:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs807747:19104926:C:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs807748:19105779:G:C	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs5993489:19051362:C:T:-	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs1934895:19080150:A:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs2793067:19081810:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs2800961:19087939:C:T	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs2800968:19090370:T:G	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs712966:19101978:A:G:+	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs9618452:19027129:C:T	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs2800971:19093047:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs377640441:19072217:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs10854539:19037734:A:G:+	0		3	PRAD,THCA,BRCA
ENSG00000273311	DGCR11	rs807743:19103598:C:G:+	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1892202:19101551:A:G	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs807740:19102582:G:C	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs807742:19103347:T:C	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2525079:19098966:T:C	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2854661:19099280:C:G	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993533:19099419:A:G	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1936952:19099813:A:C	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs55948025:19101575:GAAAA:G	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1034727:19097700:C:T	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993492:19056576:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238752:19057859:C:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993503:19063704:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993509:19069493:C:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993514:19071694:G:A	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs140743360:19071917:G:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs3960070:19072482:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2800987:19101665:G:A	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238739:19048413:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238741:19048688:C:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238743:19049602:T:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238745:19050007:C:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs9617765:19050878:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1557844:19052972:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1557845:19053016:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2238749:19053406:G:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993490:19055021:G:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs1936953:19099552:C:G	3	PRAD,THCA,BRCA	0
ENSG00000273311	DGCR11	rs374279443:19072207:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993481:19039758:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs8141583:19040808:T:A	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs5993487:19045784:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2800972:19093085:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs62221753:19091899:C:A	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2525035:19082346:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2793074:19078675:C:A	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs2189490:19094165:C:T:+	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2800959:19086904:C:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2800981:19098642:G:A	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2158335:19088607:C:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs60712409:19030348:T:C	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs807751:19107596:A:G:+	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2096055:19095664:A:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2096054:19095688:G:A	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs807744:19104186:A:T:-	0		3	PRAD,THCA,BRCA
ENSG00000273311	DGCR11	rs55987327:19032509:GT:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2012929:19034240:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs5993500:19063076:G:A	3	PRAD,HNSC,THCA	0
ENSG00000273311	DGCR11	rs2000996:19034829:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs2074004:19036479:C:T	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs715599:19031108:G:A	2	PRAD,THCA	0
ENSG00000273311	DGCR11	rs2073775:19028476:T:C	5	PRAD,KIRP,KIRC,THCA,LGG	0
ENSG00000273311	DGCR11	rs10160:19026025:A:G	5	PRAD,KIRP,KIRC,THCA,LGG	0
ENSG00000273311	DGCR11	rs2525076:19100743:T:C	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs11550626:19109764:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs11550627:19109812:A:G	5	PRAD,KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs112756113:19045274:C:CCTGT	4	LUAD,COAD,KIRC,HNSC	0
ENSG00000273311	DGCR11	rs62230769:19004501:G:A	2	LUAD,THCA	0
ENSG00000273311	DGCR11	rs62230771:19010082:G:A	2	LUAD,THCA	0
ENSG00000273311	DGCR11	rs5993465:19008025:G:A	2	LUAD,THCA	0
ENSG00000273311	DGCR11	rs807758:19113477:A:G:-	4	KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs807759:19113686:A:G	4	KIRP,KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs17743906:19128757:A:G:-	2	KIRP,THCA	0
ENSG00000273311	DGCR11	rs5993467:19010710:G:A	2	KIRP,THCA	0
ENSG00000273311	DGCR11	rs201784120:19012302:G:C	2	KIRP,THCA	0
ENSG00000273311	DGCR11	rs138296583:19011358:T:G	2	KIRP,THCA	0
ENSG00000273311	DGCR11	rs2107298:19047207:C:G:+	0		1	KIRP
ENSG00000273311	DGCR11	rs76003195:19091901:G:T	3	KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs75950404:19091904:T:G	3	KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs79791777:19091905:C:T	3	KIRC,THCA,BRCA	0
ENSG00000273311	DGCR11	rs112566348:19072247:G:A	2	HNSC,THCA	0
ENSG00000273311	DGCR11	rs56375048:19025766:C:T	2	HNSC,THCA	0
ENSG00000273311	DGCR11	rs56152933:19036754:G:A	2	HNSC,THCA	0
ENSG00000273311	DGCR11	rs2240110:19122498:C:T	0		1	THCA
ENSG00000273311	DGCR11	rs5747997:19124375:C:T	0		2	THCA,BRCA
ENSG00000273311	DGCR11	rs2854660:19084117:A:T	1	THCA	0
ENSG00000273311	DGCR11	rs712965:19121872:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs145289334:19030494:ACT:A	1	THCA	0
ENSG00000273311	DGCR11	rs58996067:19028242:CACT:C	1	THCA	0
ENSG00000273311	DGCR11	rs78836431:19024975:C:CT	1	THCA	0
ENSG00000273311	DGCR11	rs62221690:19023441:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs2003106:19016762:G:T	1	THCA	0
ENSG00000273311	DGCR11	rs62221689:19017963:A:G	1	THCA	0
ENSG00000273311	DGCR11	rs5993473:19019317:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs5993474:19020302:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs5993472:19018986:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs62221712:19035723:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs111330742:19096673:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs138665477:19104467:GATCACCTCCC:G	1	THCA	0
ENSG00000273311	DGCR11	rs73158859:19096828:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs62221755:19104950:C:G	1	THCA	0
ENSG00000273311	DGCR11	rs55696481:19089122:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs57890641:19092416:GAGA:G	1	THCA	0
ENSG00000273311	DGCR11	rs145559117:19039794:TG:T	1	THCA	0
ENSG00000273311	DGCR11	rs62221714:19040157:A:G	1	THCA	0
ENSG00000273311	DGCR11	rs62221754:19093439:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs60933748:19031818:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs62221693:19034986:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs73158856:19093158:A:G	1	THCA	0
ENSG00000273311	DGCR11	rs2066240:19097437:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs375774468:19014324:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs56262811:19087257:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs62221752:19088694:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs200827924:19084108:TA:T	1	THCA	0
ENSG00000273311	DGCR11	rs2854660:19084117:A:AT	1	THCA	0
ENSG00000273311	DGCR11	rs200593112:19081520:T:TA	1	THCA	0
ENSG00000273311	DGCR11	rs143261821:19081936:TCAA:T	1	THCA	0
ENSG00000273311	DGCR11	rs62221750:19083557:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs73158843:19084036:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs62223873:19116887:T:A	1	THCA	0
ENSG00000273311	DGCR11	rs45623038:19111560:C:A	1	THCA	0
ENSG00000273311	DGCR11	rs369480100:19072321:TG:T	1	THCA	0
ENSG00000273311	DGCR11	rs62223871:19114826:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs61099651:19046009:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs73158872:19113886:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs41277599:19116824:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs73158846:19085596:T:A	1	THCA	0
ENSG00000273311	DGCR11	rs55944437:19070732:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs73158833:19072896:G:C	1	THCA	0
ENSG00000273311	DGCR11	rs45511793:19051008:C:A	1	THCA	0
ENSG00000273311	DGCR11	rs59903599:19047369:C:A	1	THCA	0
ENSG00000273311	DGCR11	rs62221717:19048436:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs17810768:19054036:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs62221720:19061330:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs62221721:19064520:A:G	1	THCA	0
ENSG00000273311	DGCR11	rs62221745:19067871:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs60317557:19070433:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs183433910:19072483:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs59837434:19074594:G:A	1	THCA	0
ENSG00000273311	DGCR11	rs62221748:19077624:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs17743576:19055542:T:C	1	THCA	0
ENSG00000273311	DGCR11	rs62230768:19002159:C:T	1	THCA	0
ENSG00000273311	DGCR11	rs200738657:19053946:C:CA	1	THCA	0
ENSG00000273311	DGCR11	rs5747998:19124546:C:G:+	0		1	THCA

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000273311.1	ENST00000609958.1	153	458	0

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential