 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CNOT4,RBM19,PRR12,AQR,MECP2,FOXJ3,RBM6,NOP2,ILF3,RBM48,GLI4,SCAF4,NOL6,EDC3,TTF1,GMEB2,SART3,XPO1,RBM5,RC3H1,DDX56,TIGD5,ZFP62,MZF1,SGSM2,NRF1,AKAP8,SRCAP,ZXDC,ZNF84,SUGP2,CELF1,SCMH1,DMTF1,REXO4,RBM14,DDX51,TRA2A,PURB,ADNP,NCBP1,MYEF2,MBD1,KMT2A,DHX34,RBM28,HINFP,DDX31,CPSF4,EIF3B,DDX55,KMT2B,CPSF7,ZMAT1,PRDM4,ZBTB6,ZNF3,ZNF71,SAFB2,NOP9,RBM33,DDX17,NOL8,NR2C2,SIX5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | CNOT4,TTF1,KMT2B,NRF1,MZF1,E4F1,GTF2I,MECP2,ZFP62,ZMAT1,SIX5,DDX31,SCMH1,ZNF3,CPSF7,FOXK1,RC3H1,KDM2A,ADNP,RBM6,NFX1,ZNF71,DHX34,CPSF4,KMT2A,ZBTB6,ZXDC | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000273230 | ENST00000609755 | exon_skip_325891 | chr2:62987930-62988038 | -12.41 | -0.1748 | EHBP1 | ENST00000263991 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000080802 | CNOT4 | 6 | CHOL,GBM,KIRP,MESO,PCPG,THYM | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000080802 | CNOT4 | 6 | CHOL,GBM,KIRP,MESO,TGCT,THYM | | ENSG00000273230 | ENSG00000164916 | FOXK1 | ENSG00000272333 | KMT2B | 5 | ACC,GBM,KICH,LUAD,MESO | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000106459 | NRF1 | 6 | ACC,CHOL,GBM,KIRP,LGG,PCPG | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000106459 | NRF1 | 7 | ACC,CHOL,GBM,KIRP,LAML,SARC,TGCT | | ENSG00000273230 | ENSG00000164916 | FOXK1 | ENSG00000106459 | NRF1 | 6 | ACC,CHOL,GBM,KIRP,LGG,SARC | | ENSG00000273230 | ENSG00000166526 | ZNF3 | ENSG00000106459 | NRF1 | 6 | ACC,CHOL,KIRP,LAML,LGG,PCPG | | ENSG00000273230 | ENSG00000196670 | ZFP62 | ENSG00000106459 | NRF1 | 5 | ACC,CHOL,GBM,PCPG,TGCT | | ENSG00000273230 | ENSG00000167967 | E4F1 | ENSG00000099326 | MZF1 | 5 | CHOL,GBM,KIRP,LAML,LGG | | ENSG00000273230 | ENSG00000099326 | MZF1 | ENSG00000167967 | E4F1 | 5 | CHOL,GBM,KIRP,LAML,LGG | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000263001 | GTF2I | 5 | CHOL,GBM,LAML,MESO,TGCT | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000196670 | ZFP62 | 5 | ACC,CHOL,GBM,PCPG,THYM | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000196670 | ZFP62 | 5 | ACC,CHOL,GBM,TGCT,THYM | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000166432 | ZMAT1 | 5 | GBM,KIRP,MESO,PCPG,THYM | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000166432 | ZMAT1 | 5 | KIRP,LAML,MESO,SARC,THYM | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000125485 | DDX31 | 5 | ACC,CHOL,GBM,PCPG,THYM | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000166526 | ZNF3 | 6 | ACC,CHOL,KIRP,LGG,MESO,PCPG | | ENSG00000273230 | ENSG00000146757 | ZNF92 | ENSG00000166526 | ZNF3 | 5 | ACC,CHOL,KIRP,MESO,TGCT | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000166526 | ZNF3 | 6 | ACC,CHOL,KIRP,LAML,MESO,SKCM | | ENSG00000273230 | ENSG00000164916 | FOXK1 | ENSG00000166526 | ZNF3 | 6 | ACC,CHOL,KICH,KIRP,LGG,MESO | | ENSG00000273230 | ENSG00000198040 | ZNF84 | ENSG00000166526 | ZNF3 | 5 | CHOL,KIRP,LAML,MESO,PCPG | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000149532 | CPSF7 | 6 | CHOL,GBM,LGG,MESO,PCPG,THYM | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000164916 | FOXK1 | 6 | ACC,CHOL,GBM,KIRP,LGG,MESO | | ENSG00000273230 | ENSG00000164631 | ZNF12 | ENSG00000164916 | FOXK1 | 6 | ACC,CHOL,KIRP,MESO,SARC,SKCM | | ENSG00000273230 | ENSG00000166526 | ZNF3 | ENSG00000164916 | FOXK1 | 6 | ACC,CHOL,KICH,KIRP,LGG,MESO | | ENSG00000273230 | ENSG00000146587 | RBAK | ENSG00000086102 | NFX1 | 5 | ACC,CHOL,GBM,PCPG,THYM |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273230.1 | ENST00000609755.1 | 92 | 275 | 0 |
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