lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | LSM5,SOX12,PHF1,SLIRP,RNH1,EIF3G,THYN1,KHDC1,DEAF1,TGIF2,E2F1,DDX49,GLI4,THAP4,CENPT,NOL3,MYPOP,HSF4,THOC6,RBM42,IRF3,CIRBP,MRM1,SUGP1,DDX56,IMP3,TIGD5,OVOL2,MZF1,ZNF48,CSTF1,NRF1,LSM4,DBP,PIN1,CREB3,TRUB2,REXO4,TIGD1,CXXC5,RBM10,RNPS1,DDX51,NR2F6,ZBTB3,MBD3,RRP7A,PCBP4,CWC15,MESP1,SURF6,CENPB,DDX41,HINFP,XPA,CPSF4,FIZ1,EIF3B,USF2,RALY,ZNF3,SNRPA,NR1H2,SAFB2,PATZ1,LSM3 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | OVOL2,ZNF48,HSF4,MZF1,RRP7A,EIF3G,NOL3,CENPB,E4F1,THAP4,DDIT3,THAP7,RNPS1,RBM10,ZNF3,RBM42,USF2,CIRBP | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | SP1,ATF2,G3BP1,CPEB4,AGFG1,DDX3X,SCAF4,QKI,SF3A1,BACH1,SYNJ1,FOXN2,FOXN3,ZEB1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000273084 | ENST00000608012 | exon_skip_52894 | chr10:98431130-98431291 | -26.01 | -0.1885 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift | ENSG00000273084 | ENST00000608012 | exon_skip_150854 | chr17:32366664-32366757 | -14.88 | -0.3307 | ZNF207 | ENST00000321233 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000273084 | ENST00000608012 | exon_skip_319223 | chr19:43526200-43526349 | -23.54 | -0.1783 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000273084 | ENST00000608012 | exon_skip_382458 | chr3:38131595-38131638 | -10.69 | -0.2607 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000273084 | ENST00000608012 | exon_skip_41841 | chr10:68756272-68756483 | -21.30 | -0.1049 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000273084 | ENST00000608012 | exon_skip_380242 | chr3:186784961-186785101 | -17.95 | -0.1330 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000273084 | ENST00000608012 | exon_skip_97655 | chr12:120579773-120579923 | -12.81 | -0.1086 | POP5 | ENST00000357500 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5429569-5429659 | 181.00 | -86.53 | 74 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5428824-5428920 | 171.00 | -99.41 | 93 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5428914-5428994 | 166.00 | -85.53 | 79 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5429267-5429348 | 164.00 | -83.52 | 81 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5428732-5428811 | 161.00 | -80.64 | 71 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5429354-5429437 | 161.00 | -92.87 | 87 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5429172-5429267 | 157.00 | -94.54 | 92 | NA | ENSG00000273084 | hsa-mir-152 | ENST00000608012 | chr7:5429058-5429135 | 143.00 | -81.90 | 81 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273084.1 | ENST00000608012.1 | 221 | 679 | 1344 |
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