 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,TSPYL2,ARHGEF1,GSDMB,B3GNTL1,VAMP1,ARL16,UXT,EPOR,SLIRP,TCEA2,STRN4,TOMM20,ZSWIM9,NUP43,KRT10,MCRS1,ABHD17A,TMEM234,C12orf57,CIRBP,PSMB7,PET100,PCGF1,RNF166,MZF1,C1orf56,SHARPIN,DPM2,DYNC2I2,CNOT9,MAPK8IP3,SRP19,TMUB1,PPP2R3B,N4BP2L2,BCS1L,DMTF1,MKNK1,L3HYPDH,CTU1,ACD,FAM193A,RPS27A,LMBR1L,TIMM17B,GPCPD1,TRAPPC12,BCCIP,CENPB,HSDL1,NDUFA11,ULK3,RCE1,SERTAD3,DAP3,METTL5,ENY2,CENATAC,NPEPL1,ST7L,SMUG1,SAFB2,KCTD13,DTYMK,APTX,MSANTD2,TRAPPC2L,TUBGCP6,CCDC14,FAM200A,CHKA,CCNQ,FAAP20,CLK4,C6orf136,SF3A3,COMMD7,UBE2T,SURF2,ZBED5,EIF2B5,GNPAT,PRKD2,GLRX2,INPP5B,NDUFA3,PPIH,RABGGTB,RECQL4,COA4,TTC14,TRIP10,SVBP,GATD1,GKAP1,SPRN,MICOS13,TAZ,SUGP1,SPG7,NAA80,SIGIRR,NABP2,FAM104B,C19orf44,SRSF4,DAXX,SCYL3,ECHDC2,OGT,RCCD1,CCNB1IP1,RAB4B,PDE7A,COX19,CLK2,UQCC2,RNF187,TARBP2,ILKAP,ARID4B,POLG2,DHX34,LYPLAL1,PRCC,RING1,ENSA,PSENEN,CHKB,METTL17,CEP89,UROD,TMEM39B,SNHG32,TRIM11,CBY1,SLC12A9,WDR83,OSGEP,USF1,CLK1,MRRF,GABPB1,NASP,RABL2A,H3-3A,RPS6KB2,ANKRD39,DHPS,RPAIN,MOV10,HSPE1,OFD1,BABAM1,CARS2,ACYP1,MRPS34,TOMM40,SLC25A29,RPS28,FCHSD1,PIH1D1,IFT172,CTU2,CC2D1B,CFAP298,GAR1,DERL2,B3GALT6,RSRC2,PFDN6,TOR3A,NAPB,RBM42,ATP5MK,NPIPA5,C3orf62,APBA3,C19orf54,ZFP62,ALKBH2,MEA1,RPL35,ANAPC5,ORMDL1,MIIP,LPAR2,RPP38,C18orf21,FDX2,HDHD3,MCAT,C12orf73,DDX51,AGER,BRIX1,PRPF38A,MCM3,PSMB3,SPOUT1,C1orf52,CDK11A,MTLN,SYMPK,BTF3L4,FBXW4,PASK,TSEN54,NAGPA,LRRC37B,DHX35,ZNF593,TOE1,UBE2C,ATG4B,CENPM,SUPT20H,FADS3,PAFAH1B3,CCDC191,NXF1,DCUN1D2,EIF2B1,PAN2,C2orf76,FAM229A,PFDN5,CCS,MRPL41,CCDC159,DUS3L,GIGYF1,PARP10,HMGN3,NOP2,FAM193B,NDUFB1,CENPH,THEM4,PNKP,SLC25A28,NOL3,TMCO6,STK25,COG7,CZIB,IPO9,RABL6,PDRG1,KLHL17,ARHGAP33,STAP2,DNASE1,HEXD,COA6,IFT122,SDHAF2,HDAC8,GAS8,IDH3B,CASP6,VCPKMT,ANAPC11,SCNN1D,CCDC24,TOR2A,MRPS25,CCDC12,PTRHD1,KRTCAP3,UQCRHL,POLM,DECR2,ZNF69,KIF12,ERCC5,CDCA3,IQCC,FBXO4,TRIR,ZNF30,JMJD4,MRPL52,RTRAF,SLC26A11,TRMO,FLVCR1,TEDC2,FANCL,ILF3,GLI4,OVGP1,MRPL55,EMG1,CCDC28B,LENG8,RBBP8NL,NMRAL1,B4GALT2,NDUFB8,SH2B1,COX6B1,PHKA2,STK11,SNRNP25,PPP1R12C,C1orf159,DDX56,PRR3,FAM98C,UBE2G2,IP6K2,PPOX,BOP1,WDR53,PLEKHG2,MLLT6,RPL23,AHI1,MRPL20,TRIM65,GUK1,EIF2B4,TIMM44,C20orf96,DDX55,HSCB,RANBP1,ARFGAP1,MIX23,CAPN10,BICDL2,AP1G2,PFDN2,RPL13A,GLMN,FAM111A,FAM136A,GCFC2,THOC1,RPL37A,ANKMY1,WDR59,CCDC59,C8orf58,TMEM175,DNAJC8,NUTF2,PHF12,GPN2,ACBD6,TNK2,INTS11,EZH2,HMGN2,REXO1,TAMM41,CSNK1D,IMP4,MRPL24,GDPD3,NUDT3,C4orf48,ZNF44,SMPD2,TMEM138,NPDC1,NAA38,LTO1,TRAF1,PIDD1,METAP1D,NME4,JTB,AP5Z1,CWC15,CCDC106,NFYC,CCDC137,CPSF4,GGCT,TUBB4B,EMD,ALS2CL,CEP83,RFC4,NAA10,FBXO44,NELFE,METTL23,EXD3,NFKBID,GSDMD,LRIG2,CDH24,PATZ1,PCED1A,ABTB1,MAF1,NRBP2,TUSC2,EVA1B,MAPK15,C11orf98,NT5DC2,SH3GL1,EHMT2,ELP5,TBCB,CHMP2A,IKBKB,SYCE1L,NBPF11,LMF1,MRPS15,DYNLT2,BRF1,REEP4,ACIN1,ZC3H8,GNL2,GRIPAP1,PRR7,ENOSF1,THOC6,RAB2B,UBOX5,ST3GAL3,ANKRD49,PAXBP1,LEMD2,PGBD1,PQBP1,LENG1,MEX3A,ZNF48,MOGS,GALT,TADA2A,FNBP4,DENND6B,PEX11G,ATF4,CCHCR1,ZFYVE19,PRMT7,INPP5E,TRADD,PHF11,COP1,SLC35C2,REXO4,PTRH2,IL11RA,TLE2,NEK8,NXT1,SERF2,NVL,RPS10,CRACR2B,CLEC2D,ZSWIM1,VPS28,TRPT1,CHRAC1,TATDN2,TM7SF2,SUMO2,LTB4R,KIFC2,VPS4A,TSNARE1,ODF3B,HDAC1,NIT1,RNF220,MRPS9,HEMK1,UPF3B,CD2BP2,RABEP2,TMEM218,IFT20,OGFR,ALKBH4,PYURF,HAUS1,PUSL1,DDX11,FRS3,NDUFAF5,C2orf68,FBXL8,MRE11,GNRH1,SPC24,NDUFAF7,RBM6,TRMT13,ZNF862,PISD,IDUA,ARHGEF19,TMEM134,SREK1IP1,PRMT1,POP5,TEAD3,RNF115,SYF2,ORAI3,TMEM91,NTHL1,MYL5,GDI1,KIF18B,NLRP1,CNPY4,EPM2AIP1,TNFRSF14,UCKL1,UBE2L3,SCAND1,PSME3IP1,PPP1R14B,GPSM1,WDR27,RBM8A,SMYD3,UBXN11,EME2,PTCD1,NAIF1,YY1AP1,PPCDC,SSBP3,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,RSAD1,EP400P1,HPS4,PNISR,GEN1,RP9,SFPQ,MIER2,RALY,FHOD1,TRIOBP,ACAP3,SNRNP40,CARD8,ENKD1,RFC2,FAM3A,ASCC2,ATP5IF1,ZNF10,SRSF7,VPS72,LRRC14,BLOC1S1,ATAT1,IFFO1,TAF11,MORN2,DUT,STMN1,NUDT1,ATP5F1E,EXO5,PEF1,PLCG1,PSRC1,ZBTB8OS,RPS27,RASSF1,TRMU,MYPOP,CTBP1,ANGEL2,BICRA,POMT1,NFKBIB,ATXN7L2,SEM1,TIGD5,CHTF18,ARF5,CDPF1,FANCG,USP20,MRPL47,UBTF,MSTO1,POMGNT1,UBE2J2,TJAP1,NAT14,SMARCE1,TAF1D,MKS1,C1orf35,CCDC174,LSM10,ARL6IP4,CDK5RAP1,SPIN3,C7orf26,NDUFA7,LYPLA2,MARCHF9,TMEM150A,MTX1,PIGC,SLX4IP,NPRL2,EML3,KLHDC4,EFNA4,TAF12,CCNL2,FBXO46,DMPK,CLK3,RNPC3,ANKRD10,TENT4A,VPS9D1,TXLNA,CCDC77,CHTOP,TFAP4,HHLA3,MIEN1,ZDHHC8,LSM5,RFNG,SLC66A1,DDTL,SGSM3,UQCRH,TP53I13,SEC61B,C1orf174,TYK2,WDR45,MC1R,COQ4,COPS9,CCNT2,OSBPL7,ZMAT5,STX10,PHLDB3,KAT2A,NEK2,ECI1,ARMC5,ACBD4,PMF1-BGLAP,SNU13,SIPA1,ANKS6,TMEM223,CSTF3,RBM26,SNRPD3,PLA2G6,CSNK1E,TMEM86B,NR2F6,ZBTB3,C1orf131,SLC27A3,CYBC1,CEBPZOS,RHPN1,ENDOV,DPY30,FLAD1,SPRTN,PPIE,CLDN15,SETD6,FAM50A,ITPA,SF3B6,RAMP2,POLI,AURKB,PAQR6,LIN9,IRF7,SEMA6C,EFNA3,PRPF39,ZNF34,ERMARD,MRPL22,TRIM45,NDOR1,GEMIN7,PRR36,E2F6,MIB2,WHRN,LTV1,EGFL7,ZNF22,MZT2B,PHF1,TMEM69,ABHD11,ASF1B,CNOT11,HDAC10,CHADL,SCRN2,GMFG,HSF4,ATRAID,ARGLU1,ANKS3,NOXA1,YJEFN3,UCK1,SMDT1,CCNL1,RGL3,ANKRD54,C10orf88,MARCKSL1,SGSM2,VMAC,RNF25,KRI1,BCL2L12,MEAF6,SCMH1,SDCCAG8,MICALL2,RBM45,HSPBAP1,CRYGS,YAE1,SAC3D1,DYRK4,R3HDM2,CENPS,PMS1,RPS6,POLR1C,EGFL8,NR2C2AP,UCK2,PSMG4,ZGPAT,DVL1,PBX4,TIA1,ALDH16A1,HOOK2,PEX14,ZNF83,HCN3,SFXN4,TMUB2,ARFRP1,ZNF3,MCRIP2,IFI27L1,DNMT3A,ABCD4,PCGF2,BRAT1,AAMDC,PSMG3,ERCC3,MYL6B,WDR46,KDM2B,SZT2,ARPC4,IPO4,POLE,TNIP2,VPS33B,DTX3,CSKMT,KPTN,MTG2,RNF215,THOP1,TLE5,CKS1B,MAPK11,NAT9,UBA7,LIPT1,CPNE1,ABHD14A,CRAMP1,IGFLR1,LUC7L,LSM2,NKIRAS2,TRMT61A,COA5,IRF2BP2,MICOS10,MAP2K7,PPAN,CHAF1A,C14orf93,LRSAM1,DPH7,XRCC1,TNS2,CBX8,POU6F1,TRA2A,RNF126,NSMCE4A,SH3BP5L,DPH5,RPS13,POLR3F,CEP131,DUS1L,NEURL4,PNPLA7,HINFP,XPA,NR2C1,BRD9,CRTC2,AMY2B,APBB3,CNTROB,CYTH2,C8orf76,B9D2,EIF3I,NOP53,HEBP2,WBP1,RBM33,TRIT1,TONSL,FKBP2,NADSYN1,IMMP1L,SRRT,SSR2,AGAP6,RPS17,RBM19,TPRA1,GABPB2,ZNF16,MPHOSPH10,BOLA3,ADAMTS10,TRIM66,RBM39,ODF2L,C15orf61,SLC26A6,SLC25A27,MRPS26,UBE2I,IRF3,IMP3,NDUFA13,PYGO2,NRF1,COQ8B,RRNAD1,ZXDC,CCDC92,GADD45GIP1,SNRPD2,KAT8,INTS3,TRIM39,SNF8,ICA1,PIGL,NEK3,COQ8A,ERH,RP11-523H20.5,CSAD,AGAP3,KIAA0895L,DDX39A,ARV1,NDUFAF6,ATAD3B,HAUS8,SAMD10,GPATCH2,NOL10,MUTYH,RBM28,BANF1,BCL7C,ZNF74,OBSL1,DCAF8,MFSD10,ABCA5,TMEM259,PHYKPL,TMEM9,CACTIN,FRA10AC1,SRM,RPL27,PRKRA,VPS37B,LIN37,HAX1,ZFP69,PYCR2,IFT27,PAN3,ZNHIT1,PHKG2,NARF,PMF1,SARS2,BUD31,NIPSNAP3B,ARHGAP4,ASB6,ZDHHC12,POLR2J,PPP1R16A,LRRC75B,SS18L2,SWSAP1,SENP3,ZC3H4,RALGDS,RAB13,NT5C3B,UBE2D4,MED31,POLR2I,C1orf216,PA2G4,TM2D3,CENPT,OSGEPL1,PACS2,ZGLP1,CRLS1,CFAP410,SPPL3,MTG1,MRTO4,ZC3H3,POGZ,GTPBP3,ANAPC7,LSM4,UBE2Q1,C1orf50,RBMX,RBM4B,SNRPB,DNAJB2,MRPS31,CCDC102A,ANAPC2,BEND5,C21orf58,TAF1C,UFD1,ADNP,ADAT2,MAP3K12,NCOA5,MYO19,C20orf27,SURF6,SAMD1,RNASEH2B,UBL5,RPS11,CAPN15,CNKSR1,CXXC1,MRNIP,MPV17,SS18L1,SLC35B1,ELMOD3,DDX17,C8orf82,GGPS1,GPATCH3,GSTM2,HSF1,ING4,MED15,HAUS5,MTRF1,REC8,ARVCF,CLN6,THYN1,NINL,CEP290,FBXL12,PRAF2,SDR39U1,ZMYND19,PGGHG,TELO2,IFT46,CDAN1,FBXL6,TEDC1,TRAIP,STK19,HTRA2,AUP1,PHIP,ANO9,FAM228B,WASHC1,USP21,TIGD1,KLC1,PTMS,RBM10,GPS2,E2F4,TRIM52,RPL36A,COA8,PCBP4,THAP3,NOL12,MTFR1L,MOSPD3,PCP2,CLASRP,DFFB,DEDD,TTC13,MBD6,CWC25,STK36,STAC3,HMGN1,TRAF4,ANKRD16,TTC32,MICAL1,MOB2,ZMAT1,GOLGA8B,SPATA33,EEF1D,ACP6,RPS24,STRADA,SMG9,ZNF18,TIMM29,LZTS2,EIF2D,TMA7,GOLGA8A,ITGAE,CYP2R1,PAM16,MACROD1,FLOT1,SETD4,SPIRE2,EIF3E,TPRKB,CPSF3,KLHDC3,TYSND1,PSMC3IP,AARSD1,DUSP28,NACA,RBM5,BOLA1,RPS19BP1,NKTR,CEP162,YPEL3,SAP30BP,RNASEH2C,VPS16,BCDIN3D,TMEM11,ZCCHC7,ADPRS,TTLL3,DOT1L,SLC25A45,ZNF84,PARP6,RHBDD3,TUBD1,C19orf18,GNL1,OBSCN,HOMER3,P3H1,NMRK1,REX1BD,MRPS14,LRP5L,TIPIN,TFPT,TSC1,SH3GLB2,DENND4B,HSD11B1L,FASTK,SIRT6,MAN2C1,ECH1,DXO,HSPB11,DPP9,LZTR1,ANKRD13D,MRPL38,LIG1,NELFA,CCDC57,RABL2B,TRAPPC2,SNRPB2,SIRT7,MRFAP1L1,STK38 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,GLB1,RNH1,ATP2A2,CMTM4,CTNNB1,THTPA,RAB5C,EIF3L,DLST,PNPO,ATP6V1D,NBAS,ATP6V0D1,VPS26C,LRRC59,HSPA8,M6PR,LARS2,NIPA2,MYH9,SNX12,RNF123,CHP1,ILK,HUWE1,APAF1,PRKAR1A,BECN1,RNF40,APP,CYFIP1,CHTF8,CDKL5,DAG1,USP32,LRP10,LAMP1,NOP9,WDR7,ARF3,TMCO3,ATRN,RHOA,ITFG1,KIAA0100,ITGB1,BTD,SMG6,SF3A1,RAB7A,BCKDHA,USP10,PRMT5,DDB1,TMBIM6,ABHD5,ATP6V0C,BCKDHB,NKIRAS1,OS9,RPN2,DCAF7,PSME3,PIGS,AP2B1,NOMO2,ALAS1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000273058 | ENST00000608547 | exon_skip_377198 | chr3:123130479-123130616 | -14.04 | -0.1494 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_5818 | chr1:45568484-45568684 | -18.32 | -0.1246 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_11029 | chr1:154989559-154989707 | -19.89 | -0.1604 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_41813 | chr10:68337857-68337996 | -17.90 | -0.1288 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_103007 | chr13:37025319-37025437 | -13.76 | -0.1336 | SUPT20H | ENST00000350612 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_110959 | chr14:20372732-20372857 | -13.62 | -0.1285 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_309204 | chr19:49181348-49181461 | -15.80 | -0.1463 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_333962 | chr2:219247112-219247246 | -14.32 | -0.1077 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_382458 | chr3:38131595-38131638 | -9.17 | -4.5850 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_446770 | chr5:178215275-178215430 | -13.53 | -0.1065 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_66482 | chr11:126274926-126275021 | -13.19 | -0.1570 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_79575 | chr12:6727925-6728001 | -9.23 | -0.2495 | COPS7A | ENST00000229251,ENST00000534877,ENST00000534947,ENST00000539735,ENST00000543155 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_92074 | chr12:50142052-50142110 | -6.11 | -0.1111 | CERS5 | ENST00000317551 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_95407 | chr12:95040475-95040597 | -18.21 | -0.1626 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_111746 | chr14:23347890-23347996 | -14.85 | -0.1470 | SLC22A17 | ENST00000397267 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_111863 | chr14:23565815-23565892 | -12.20 | -0.1821 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_114365 | chr14:74290026-74290118 | -12.67 | -0.2184 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_114376 | chr14:74293153-74293248 | -11.10 | -0.1820 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_152672 | chr17:42540949-42541206 | -23.63 | -0.1041 | NAGLU | ENST00000225927 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_290158 | chr17:42953723-42953778 | -7.71 | -0.1542 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_300663 | chr19:1425877-1425960 | -10.12 | -0.2468 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_313557 | chr19:5786748-5786845 | -13.41 | -0.1656 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_319223 | chr19:43526200-43526349 | -18.19 | -0.1491 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_327433 | chr2:86125794-86125880 | -9.89 | -0.1164 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_327748 | chr2:95410863-95411026 | -21.37 | -0.1826 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_335558 | chr2:240596680-240596942 | -24.38 | -0.1003 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_339830 | chr2:69423581-69423717 | -12.82 | -0.1198 | NFU1 | ENST00000410022 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_370518 | chr22:50247691-50247776 | -15.16 | -0.2332 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_371367 | chr3:9697710-9697866 | -15.29 | -0.1100 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000273058 | ENST00000608547 | exon_skip_374375 | chr3:49675182-49675309 | -24.84 | -0.2036 | APEH | ENST00000296456 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_380242 | chr3:186784961-186785101 | -12.13 | -0.1166 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_445390 | chr5:150403120-150403312 | -24.69 | -0.1524 | CD74 | ENST00000009530 | In-frame | | ENSG00000273058 | ENST00000608547 | exon_skip_446758 | chr5:178212972-178213103 | -15.22 | -0.1227 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_462160 | chr6:127316449-127316502 | -7.25 | -0.6042 | ECHDC1 | ENST00000531967 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_466137 | chr7:48103296-48103411 | -11.95 | -0.1127 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_303345 | chr19:17227839-17228005 | -15.91 | -0.1145 | OCEL1 | ENST00000215061 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_364260 | chr22:29291561-29291599 | -10.54 | -0.3634 | EWSR1 | ENST00000397938 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_374581 | chr3:50110378-50110463 | -12.60 | -0.2739 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_52671 | chr10:97461495-97461622 | -18.34 | -0.1698 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000273058 | ENST00000608547 | exon_skip_476008 | chr7:65970281-65970366 | -10.23 | -0.1312 | GUSB | ENST00000304895 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000273058 | ENSG00000004777 | ARHGAP33 | ACC,BRCA,CHOL,KIRC,KIRP,LAML,LIHC,LUSC,PAAD,PRAD,READ,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000007545 | CRAMP1 | ACC,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LUAD,LUSC,PAAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000051128 | HOMER3 | ACC,CHOL,LGG,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000077152 | UBE2T | ACC,CESC,CHOL,HNSC,LGG,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000079462 | PAFAH1B3 | ACC,BLCA,CHOL,HNSC,KIRP,LGG,LIHC,PRAD,SARC,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000090924 | PLEKHG2 | ACC,CHOL,GBM,KIRC,LGG,LIHC,TGCT | CHOL,LIHC | | | ENSG00000273058 | ENSG00000090971 | NAT14 | ACC,CHOL,HNSC,KIRP,LGG,LIHC,PRAD,TGCT,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000095397 | WHRN | ACC,CHOL,KIRP,TGCT,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000100106 | TRIOBP | ACC,CHOL,HNSC,KIRC,KIRP,LAML,LGG,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000100918 | REC8 | ACC,CHOL,HNSC,KIRC,READ,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000105011 | ASF1B | ACC,CHOL,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000105486 | LIG1 | ACC,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000105556 | MIER2 | ACC,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PRAD,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000106462 | EZH2 | ACC,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000110721 | CHKA | ACC,CHOL,KIRP,LGG,LIHC,TGCT,THCA,UCS,UVM | LIHC | | | ENSG00000273058 | ENSG00000111665 | CDCA3 | ACC,BRCA,CHOL,HNSC,LGG,LIHC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000112118 | MCM3 | ACC,CHOL,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000117632 | STMN1 | ACC,CESC,CHOL,HNSC,LIHC,READ,UCS,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000117650 | NEK2 | ACC,CHOL,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000119772 | DNMT3A | ACC,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,LUSC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000121289 | CEP89 | ACC,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,TGCT,UVM | CHOL | | | ENSG00000273058 | ENSG00000123136 | DDX39A | ACC,CHOL,HNSC,KIRC,KIRP,LAML,LGG,LIHC,PAAD,PRAD,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000125835 | SNRPB | ACC,CHOL,HNSC,KIRP,LGG,LIHC,PRAD,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000127586 | CHTF18 | ACC,BLCA,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,THCA,THYM,UCEC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000131470 | PSMC3IP | ACC,CHOL,HNSC,KIRP,LGG,LUSC,UVM | CHOL | | | ENSG00000273058 | ENSG00000132680 | KHDC4 | ACC,BRCA,CESC,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,PRAD,SKCM,STAD,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000134222 | PSRC1 | ACC,CHOL,HNSC,KIRP,LGG,LIHC,UVM | LIHC | | | ENSG00000273058 | ENSG00000135723 | FHOD1 | ACC,CHOL,KIRC,PAAD,UCEC | CHOL | | | ENSG00000273058 | ENSG00000141858 | SAMD1 | ACC,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,SARC,THCA | CHOL | | | ENSG00000273058 | ENSG00000143748 | NVL | ACC,CESC,CHOL,ESCA,GBM,HNSC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,SARC,STAD,THYM,UVM | CHOL | | | ENSG00000273058 | ENSG00000143793 | C1orf35 | ACC,BLCA,BRCA,CESC,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,SKCM,THCA,THYM,UCEC,UCS,UVM | LIHC | | | ENSG00000273058 | ENSG00000149716 | LTO1 | ACC,CHOL,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,PAAD,THCA,UCEC,UCS,UVM | CHOL | | | ENSG00000273058 | ENSG00000153044 | CENPH | ACC,CHOL,HNSC,KIRP,LGG,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000158062 | UBXN11 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,OV,PAAD,PCPG,PRAD,SARC,STAD,TGCT,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000160360 | GPSM1 | ACC,CHOL,KIRP,LAML,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000160949 | TONSL | ACC,CHOL,GBM,HNSC,KIRP,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000161888 | SPC24 | ACC,CHOL,HNSC,KIRC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000162062 | TEDC2 | ACC,CHOL,GBM,HNSC,KIRP,LGG,LIHC,LUSC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000163482 | STK36 | ACC,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,OV,THCA,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000167523 | SPATA33 | ACC,CHOL,HNSC,KIRC,KIRP,LUSC,PAAD,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000167670 | CHAF1A | ACC,CHOL,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000167702 | KIFC2 | ACC,BLCA,CHOL,KIRC,KIRP,THCA,THYM,UVM | CHOL | | | ENSG00000273058 | ENSG00000168096 | ANKS3 | ACC,BLCA,BRCA,CESC,CHOL,COAD,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000168393 | DTYMK | ACC,CHOL,HNSC,KIRP,LGG,LIHC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000168476 | REEP4 | ACC,CHOL,GBM,KIRP,LGG,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000171960 | PPIH | ACC,BRCA,CESC,CHOL,HNSC,KIRP,LGG,LIHC,PCPG,PRAD,SKCM,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000173207 | CKS1B | ACC,CHOL,GBM,HNSC,LGG,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000173653 | RCE1 | ACC,CHOL,GBM,KIRP,LGG,LIHC | CHOL | | | ENSG00000273058 | ENSG00000175063 | UBE2C | ACC,CHOL,GBM,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000178999 | AURKB | ACC,CHOL,HNSC,LGG,LIHC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000182173 | TSEN54 | ACC,BLCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,PCPG,PRAD,THCA,THYM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000182325 | FBXL6 | ACC,BLCA,CHOL,GBM,KIRC,KIRP,LGG,LIHC,READ,THCA,THYM,UCEC,UCS | LIHC | | | ENSG00000273058 | ENSG00000183814 | LIN9 | ACC,CHOL,ESCA,GBM,HNSC | CHOL | | | ENSG00000273058 | ENSG00000184162 | NR2C2AP | ACC,BRCA,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PRAD,SARC,THCA,THYM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000186185 | KIF18B | ACC,CHOL,HNSC,LIHC,LUSC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000188566 | NDOR1 | ACC,CHOL,GBM,KIRC,KIRP,LIHC,PAAD | LIHC | | | ENSG00000273058 | ENSG00000196465 | MYL6B | ACC,CESC,CHOL,KIRC,KIRP,LIHC,TGCT,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000196642 | RABL6 | ACC,CHOL,KIRC,KIRP,LIHC,PAAD,SARC,UCS | CHOL | | | ENSG00000273058 | ENSG00000197774 | EME2 | ACC,BRCA,CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000204305 | AGER | ACC,BLCA,BRCA,CESC,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,STAD,TGCT,UCEC,UCS,UVM | CHOL | | | ENSG00000273058 | ENSG00000204387 | SNHG32 | ACC,CHOL,HNSC,LIHC,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000204536 | CCHCR1 | ACC,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,READ,THCA,THYM | LIHC | | | ENSG00000273058 | ENSG00000221829 | FANCG | ACC,CHOL,GBM,KIRP,LGG,LIHC,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000241343 | RPL36A | ACC,BRCA,CHOL,DLBC,GBM,HNSC,LGG,LIHC,PCPG,PRAD,SKCM,THCA,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000243449 | C4orf48 | ACC,CHOL,KIRP,LGG,THCA | CHOL | | | ENSG00000273058 | ENSG00000250067 | YJEFN3 | ACC,BLCA,CHOL,GBM,KIRC,KIRP,LAML,OV,PAAD,PRAD,THYM,UCEC | CHOL | | | ENSG00000273058 | ENSG00000258839 | MC1R | ACC,CHOL,KIRP,LAML,LUAD,PAAD,THCA,THYM,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000108773 | KAT2A | BLCA,BRCA,CHOL,HNSC,KIRC,KIRP,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCEC,UVM | LIHC | | | ENSG00000273058 | ENSG00000109065 | NAT9 | BLCA,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PCPG,PRAD,SARC,THCA,UCS | LIHC | | | ENSG00000273058 | ENSG00000127415 | IDUA | BLCA,BRCA,CHOL,KIRC,KIRP,LAML,LGG,PRAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000130701 | RBBP8NL | BLCA,BRCA,CHOL,LUAD,PRAD,UCEC | CHOL | | | ENSG00000273058 | ENSG00000134253 | TRIM45 | BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,TGCT,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000137343 | ATAT1 | BLCA,BRCA,CHOL,COAD,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LIHC,READ,SKCM,STAD,TGCT,THCA,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000141570 | CBX8 | BLCA,CHOL,ESCA,HNSC,LIHC,LUAD | CHOL,LIHC | | | ENSG00000273058 | ENSG00000142330 | CAPN10 | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,READ,TGCT,THCA,UCEC,UCS,UVM | CHOL | | | ENSG00000273058 | ENSG00000158106 | RHPN1 | BLCA,CHOL,KIRC,KIRP,TGCT,THCA,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000159239 | RP11-523H20.5 | BLCA,CHOL,KIRC,KIRP,LGG,SARC,TGCT,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000160959 | LRRC14 | BLCA,CHOL,HNSC,KIRC,KIRP,LIHC,PAAD,THCA,THYM | LIHC | | | ENSG00000273058 | ENSG00000177548 | RABEP2 | BLCA,CHOL,HNSC,KIRC,LGG,LUAD,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000183248 | PRR36 | BLCA,CHOL,ESCA,KIRP,PRAD,TGCT,UCS | CHOL | | | ENSG00000273058 | ENSG00000196476 | C20orf96 | BLCA,CESC,CHOL,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LIHC,LUAD,OV,PRAD,STAD,TGCT,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000204220 | PFDN6 | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,SKCM,THCA,THYM,UCEC,UCS | LIHC | | | ENSG00000273058 | ENSG00000213139 | CRYGS | BLCA,CESC,CHOL,KIRP,PAAD,UCEC | CHOL | | | ENSG00000273058 | ENSG00000214021 | TTLL3 | BLCA,BRCA,CHOL,COAD,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PRAD,STAD,TGCT,THCA,UCEC | CHOL | | | ENSG00000273058 | ENSG00000215252 | GOLGA8B | BLCA,BRCA,CHOL,COAD,DLBC,ESCA,KIRC,KIRP,LIHC,LUAD,LUSC,OV,PAAD,PRAD,STAD,THCA,THYM,UCEC,UCS,UVM | LIHC | | | ENSG00000273058 | ENSG00000077463 | SIRT6 | BRCA,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000102125 | TAZ | BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UVM | LIHC | | | ENSG00000273058 | ENSG00000107816 | LZTS2 | BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,TGCT | CHOL | | | ENSG00000273058 | ENSG00000119640 | ACYP1 | BRCA,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,PCPG,PRAD,READ,STAD,TGCT,THCA,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000125459 | MSTO1 | BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,THYM,UCEC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000142632 | ARHGEF19 | BRCA,CHOL,GBM,HNSC,LAML,LUAD,TGCT,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000143258 | USP21 | BRCA,CESC,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,TGCT,THCA,THYM,UCEC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000143643 | TTC13 | BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LIHC,LUAD,LUSC,PAAD,TGCT,THYM,UCEC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000144134 | RABL2A | BRCA,CESC,CHOL,ESCA,KIRC,KIRP,LAML,LUAD,MESO,OV,PAAD,PRAD,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000160050 | CCDC28B | BRCA,CHOL,ESCA,LAML,LGG,PAAD,TGCT | CHOL | | | ENSG00000273058 | ENSG00000160688 | FLAD1 | BRCA,CESC,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,THYM,UCEC,UCS | LIHC | | | ENSG00000273058 | ENSG00000163159 | VPS72 | BRCA,CESC,CHOL,HNSC,LIHC,SARC,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000168275 | COA6 | BRCA,CHOL,HNSC,LGG,LIHC,PRAD,SARC,SKCM,THCA,THYM,UCS,UVM | LIHC | | | ENSG00000273058 | ENSG00000174943 | KCTD13 | BRCA,CHOL,HNSC,KIRC,KIRP,LUAD,PAAD,PRAD,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000175130 | MARCKSL1 | BRCA,CHOL,LIHC,TGCT,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000181085 | MAPK15 | BRCA,CHOL,KIRC,KIRP,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000185101 | ANO9 | BRCA,CHOL,KIRC,KIRP,LAML | CHOL | | | ENSG00000273058 | ENSG00000185917 | SETD4 | BRCA,CHOL,COAD,HNSC,KIRC,KIRP,LIHC,LUAD,PAAD,PRAD,STAD,THCA,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000230124 | ACBD6 | BRCA,CESC,CHOL,GBM,HNSC,KIRC,KIRP,LAML,LIHC,LUAD,PAAD,PRAD,SKCM,TGCT,THCA,THYM,UCEC | CHOL,LIHC | | | ENSG00000273058 | ENSG00000273899 | NOL12 | BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,STAD,THCA,THYM,UCEC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000135845 | PIGC | CESC,CHOL,HNSC,LGG,LIHC,SKCM,THYM,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000147437 | GNRH1 | CESC,CHOL,KIRC,KIRP,THYM | CHOL | | | ENSG00000273058 | ENSG00000160051 | IQCC | CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000163348 | PYGO2 | CESC,CHOL,GBM,HNSC,KIRP,LGG,LIHC,LUSC,PAAD,READ,THCA,UCEC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000163479 | SSR2 | CESC,CHOL,HNSC,KIRP,LGG,LIHC,SKCM,TGCT | CHOL,LIHC | | | ENSG00000273058 | ENSG00000215440 | NPEPL1 | CESC,CHOL,HNSC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000243364 | EFNA4 | CESC,CHOL,GBM,HNSC,KIRP,LIHC,READ,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000003147 | ICA1 | CHOL,KIRP,READ,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000006025 | OSBPL7 | CHOL,DLBC,GBM,KIRC,KIRP,LGG,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000014164 | ZC3H3 | CHOL,GBM,KIRC,KIRP,LIHC,THCA | LIHC | | | ENSG00000273058 | ENSG00000046651 | OFD1 | CHOL,ESCA,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,READ,STAD,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000056558 | TRAF1 | CHOL,COAD,KIRC,KIRP,PAAD,READ,UVM | CHOL | | | ENSG00000273058 | ENSG00000064547 | LPAR2 | CHOL,GBM,HNSC,KIRC,KIRP,THCA | CHOL | | | ENSG00000273058 | ENSG00000071859 | FAM50A | CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PCPG,PRAD,THCA,THYM | LIHC | | | ENSG00000273058 | ENSG00000076928 | ARHGEF1 | CHOL,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,PAAD,PCPG,PRAD,THCA,UCEC | CHOL | | | ENSG00000273058 | ENSG00000089820 | ARHGAP4 | CHOL,HNSC,KIRC,LGG,PAAD | CHOL | | | ENSG00000273058 | ENSG00000092978 | GPATCH2 | CHOL,ESCA,GBM,KIRP,LIHC,SKCM,STAD | CHOL | | | ENSG00000273058 | ENSG00000099917 | MED15 | CHOL,KIRC,KIRP,LIHC,PCPG,THYM | CHOL | | | ENSG00000273058 | ENSG00000102977 | ACD | CHOL,HNSC,KIRC,KIRP,LIHC,LUSC,PAAD,SARC,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000104936 | DMPK | CHOL,GBM,KIRC,KIRP,LGG,LIHC,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000105287 | PRKD2 | CHOL,GBM,KIRC,LGG,LIHC,UCS | CHOL | | | ENSG00000273058 | ENSG00000105443 | CYTH2 | CHOL,HNSC,KIRC,KIRP,LAML,LGG,LIHC,THCA,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000105771 | SMG9 | CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PRAD,THCA,THYM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000106077 | ABHD11 | CHOL,HNSC,KIRP,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000106268 | NUDT1 | CHOL,HNSC,KIRP,LGG,LIHC,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000109736 | MFSD10 | CHOL,KIRC,KIRP,LGG,PCPG,PRAD,SARC,TGCT,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000115687 | PASK | CHOL,COAD,HNSC,KIRP,LUAD,LUSC,PAAD | CHOL | | | ENSG00000273058 | ENSG00000122417 | ODF2L | CHOL,KIRC,KIRP,LUAD,STAD,TGCT | CHOL | | | ENSG00000273058 | ENSG00000123810 | B9D2 | CHOL,HNSC,KIRC,KIRP,LAML,LGG,PCPG,THCA | CHOL | | | ENSG00000273058 | ENSG00000125733 | TRIP10 | CHOL,KIRC,KIRP,LGG,LIHC,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000126457 | PRMT1 | CHOL,HNSC,LGG,LIHC,THCA | CHOL | | | ENSG00000273058 | ENSG00000130590 | SAMD10 | CHOL,DLBC,KIRC,KIRP,LIHC,PRAD,SARC,TGCT,THCA,THYM,UCS | CHOL | | | ENSG00000273058 | ENSG00000131188 | PRR7 | CHOL,KIRC,KIRP,LAML,LIHC,THCA,THYM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000135596 | MICAL1 | CHOL,GBM,KIRC,KIRP,PAAD | CHOL | | | ENSG00000273058 | ENSG00000135736 | CCDC102A | CHOL,GBM,KIRC,LAML,THCA | CHOL | | | ENSG00000273058 | ENSG00000137338 | PGBD1 | CHOL,HNSC,LAML,LGG,LIHC,THCA,UVM | LIHC | | | ENSG00000273058 | ENSG00000138002 | IFT172 | CHOL,ESCA,GBM,KIRC,KIRP,LIHC,LUSC,OV,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000138834 | MAPK8IP3 | CHOL,COAD,DLBC,KIRC,KIRP,LUAD,OV,PAAD,PRAD,TGCT,THCA,UCEC,UVM | CHOL | | | ENSG00000273058 | ENSG00000139624 | CERS5 | CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,STAD,THCA | CHOL | | | ENSG00000273058 | ENSG00000139625 | MAP3K12 | CHOL,ESCA,GBM,KIRC,KIRP,LUAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000139880 | CDH24 | CHOL,KIRP,PAAD,PCPG,TGCT | CHOL | | | ENSG00000273058 | ENSG00000141013 | GAS8 | CHOL,COAD,KIRC,LUAD,MESO,THCA,UCS | CHOL | | | ENSG00000273058 | ENSG00000141569 | TRIM65 | CHOL,HNSC,KIRP,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000143179 | UCK2 | CHOL,GBM,LIHC,THYM,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000143434 | SEMA6C | CHOL,GBM,KIRC,KIRP,LAML,LIHC,TGCT | LIHC | | | ENSG00000273058 | ENSG00000154358 | OBSCN | CHOL,KIRC,LAML,LUAD,LUSC,OV,TGCT,UCEC | CHOL | | | ENSG00000273058 | ENSG00000157992 | KRTCAP3 | CHOL,HNSC,KIRP,MESO,THCA | CHOL | | | ENSG00000273058 | ENSG00000160298 | C21orf58 | CHOL,HNSC,LGG,LUSC,TGCT | CHOL | | | ENSG00000273058 | ENSG00000162069 | BICDL2 | CHOL,LUAD,PRAD,UCEC,UCS | CHOL | | | ENSG00000273058 | ENSG00000162373 | BEND5 | CHOL,LGG,PAAD,PCPG,SKCM,TGCT,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000162769 | FLVCR1 | CHOL,GBM,HNSC,KIRC,KIRP,LIHC,LUAD,UCEC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000163918 | RFC4 | CHOL,HNSC,LGG,LIHC,UVM | CHOL,LIHC | | | ENSG00000273058 | ENSG00000164877 | MICALL2 | CHOL,HNSC,KIRC,KIRP,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000165138 | ANKS6 | CHOL,COAD,GBM,LAML,LIHC,READ,THYM,UCS | CHOL,LIHC | | | ENSG00000273058 | ENSG00000166012 | TAF1D | CHOL,DLBC,GBM,KIRP,LIHC,LUAD,MESO,PRAD,STAD,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000167615 | LENG8 | CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000168061 | SAC3D1 | CHOL,HNSC,KIRP,LGG,LIHC | LIHC | | | ENSG00000273058 | ENSG00000168268 | NT5DC2 | CHOL,KIRP,LGG,LIHC,TGCT,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000169217 | CD2BP2 | CHOL,HNSC,LGG,PAAD,THCA | CHOL | | | ENSG00000273058 | ENSG00000173457 | PPP1R14B | CHOL,DLBC,KIRP,LGG,LIHC,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000185158 | LRRC37B | CHOL,KIRC,KIRP,LUAD,STAD | CHOL | | | ENSG00000273058 | ENSG00000185386 | MAPK11 | CHOL,KIRC,LAML,PAAD,THYM | CHOL | | | ENSG00000273058 | ENSG00000189376 | C8orf76 | CHOL,KIRC,KIRP,LGG,LIHC,THCA,UVM | LIHC | | | ENSG00000273058 | ENSG00000197119 | SLC25A29 | CHOL,COAD,GBM,HNSC,KIRC,KIRP,LUAD,PRAD,THCA,UCEC,UCS,UVM | CHOL | | | ENSG00000273058 | ENSG00000197948 | FCHSD1 | CHOL,KIRC,KIRP,LGG,PAAD,SARC,THCA | CHOL | | | ENSG00000273058 | ENSG00000198707 | CEP290 | CHOL,ESCA,KIRC,KIRP,LUSC,STAD | CHOL | | | ENSG00000273058 | ENSG00000204371 | EHMT2 | CHOL,GBM,HNSC,KIRP,LIHC,PAAD,TGCT,THCA | CHOL,LIHC | | | ENSG00000273058 | ENSG00000204991 | SPIRE2 | CHOL,KIRP,LIHC,LUAD,TGCT,THYM,UCS | LIHC | | | ENSG00000273058 | ENSG00000205078 | SYCE1L | CHOL,KIRC,KIRP,TGCT,THCA | CHOL | | | ENSG00000273058 | ENSG00000205268 | PDE7A | CHOL,GBM,LIHC,PAAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000205517 | RGL3 | CHOL,ESCA,KIRC,KIRP,LIHC,LUAD,THCA,UCEC | CHOL | | | ENSG00000273058 | ENSG00000205593 | DENND6B | CHOL,COAD,ESCA,KIRC,KIRP,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM | CHOL | | | ENSG00000273058 | ENSG00000213923 | CSNK1E | CHOL,KIRC,KIRP,LAML,LIHC,LUSC,UVM | CHOL | | | ENSG00000273058 | ENSG00000225697 | SLC26A6 | CHOL,GBM,KIRP,LGG,LIHC,LUAD,THCA | LIHC | | | ENSG00000273058 | ENSG00000240230 | COX19 | CHOL,DLBC,HNSC,KIRC,KIRP,LAML,LIHC,READ,STAD,THCA,UVM | CHOL | | | ENSG00000273058 | ENSG00000242802 | AP5Z1 | CHOL,KIRC,KIRP,LGG,LIHC,PAAD | LIHC | | | ENSG00000273058 | ENSG00000261236 | BOP1 | CHOL,GBM,LIHC,THCA,THYM | LIHC | | | ENSG00000273058 | ENSG00000275023 | MLLT6 | CHOL,HNSC,KIRC,KIRP,LAML,LIHC,LUSC,PAAD,UVM | CHOL | | | ENSG00000273058 | ENSG00000143590 | EFNA3 | KIRC,KIRP,LIHC,READ,SARC,THCA | LIHC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000273058 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,READ,PRAD,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000273058 | ENST00000608547 | PNPO | ENSG00000108439 | ENST00000585320 | -0.1169 | 97 | - | CHOL | | ENSG00000273058 | ENST00000608547 | CNIH1 | ENSG00000100528 | ENST00000556113 | -0.1085 | 49 | - | CHOL | | ENSG00000273058 | ENST00000608547 | ALAS1 | ENSG00000023330 | ENST00000493402 | -0.3488 | 318 | - | CHOL,LIHC | | ENSG00000273058 | ENST00000608547 | BCKDHB | ENSG00000083123 | ENST00000369760 | -0.2219 | 390 | - | CHOL,LIHC | | ENSG00000273058 | ENST00000608547 | BTD | ENSG00000169814 | ENST00000417015 | -0.1251 | 1 | - | CHOL | | ENSG00000273058 | ENST00000608547 | BTD | ENSG00000169814 | ENST00000449107 | -0.3029 | 90 | - | CHOL | | ENSG00000273058 | ENST00000608547 | NKIRAS1 | ENSG00000197885 | ENST00000416026 | -0.2142 | 164 | - | CHOL |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000273058.2 | ENST00000608547.2 | 139 | 1001 | 582 |
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