lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | PCBP4,TFE3,NOP2,TEAD4,RUNX1,SNAI2,TEAD2 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000273038 | ENST00000609742 | exon_skip_106783 | chr14:55673171-55673255 | -10.83 | -0.1747 | KTN1 | ENST00000395314 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
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LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888209-32888305 | 215.00 | -98.98 | 100 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32887571-32887669 | 200.00 | -80.37 | 94 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888447-32888529 | 193.00 | -84.42 | 89 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32887728-32887829 | 189.00 | -79.47 | 101 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32887821-32887916 | 185.00 | -81.76 | 95 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888043-32888138 | 185.00 | -82.54 | 84 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32887296-32887384 | 174.00 | -73.88 | 86 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32889081-32889168 | 174.00 | -83.82 | 90 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888520-32888624 | 164.00 | -93.21 | 96 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888877-32888970 | 159.00 | -98.42 | 96 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888694-32888783 | 156.00 | -85.02 | 96 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888318-32888414 | 155.00 | -87.65 | 88 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32888977-32889074 | 151.00 | -90.61 | 93 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32887925-32888018 | 149.00 | -74.86 | 81 | NA | ENSG00000273038 | hsa-mir-30e | ENST00000609742 | chr10:32889171-32889267 | 148.00 | -70.31 | 91 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,ITGA5 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,P3H4 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,ITGB1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,COL5A1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,COL3A1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,CTHRC1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,P3H3 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,POSTN | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,DPYSL3 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,CERCAM | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,COL5A2 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,PMEPA1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,TLCD3A | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,P4HA1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,RCN1 | KICH,CHOL,MESO,THYM,KIRP | ENSG00000273038 | RP11-479G22.8,hsa-mir-30e,CALU | KICH,CHOL,MESO,THYM,KIRP |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273038.2 | ENST00000609742.2 | 129 | 21 | 410 |
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