lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | NCOA2,PBX2,KLF12,ZBTB4,GLYR1,RBM23,RFX5,ARID2,ZXDC,KAT7,SUGP2,MAFG,MAZ,VEZF1,BAZ2A,HELZ2,ATF6B,NFKB1,DDX24,GRHL2,TET3,ZBTB5,ZXDA,NOP9,ZNF25,MNT,GATA2,SCAF4,STAT3,MEX3C,ZNF44,U2AF2,GZF1,MBD1,CLOCK,ASCC1,ARNT2,RARG,CPSF7,KLF11,PRDM4,TCF20,NFIC,RBM47,PATZ1,SRRM2,PRR12,FOXN3,SP2,ZHX3,MECP2,KLF3,SART3,MEX3D,SGSM2,SMAD3,WIZ,PSPC1,BACH1,PRDM2,MBD6,SALL2,PATL1,QKI,ZFR,SYNJ1,SIX5,STAT6,ARNT,KDM2B,RFX1,ZFHX3,FXR2,CPEB3,ELF2,CASZ1,MTF1,SRCAP,DOT1L,RXRB,AHDC1,AKAP1,SF3A1,DACH1,MEF2D,MECOM,ADAT1,ETV3,TET2,TDRKH,RBM33 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | ZHX3,AGO1,DOT1L,MEF2D,POGK,DACH1,SCAF4,ZBTB4,MECP2,BAZ2A,U2AF2,FXR2,SP1,KLF12,ZFR,SMAD1,FOXO4,ADAT1,SF3A1,NFIX,TCF20,GLYR1,PATZ1,CPSF7,PATL1,ELK3,DHX30,ZFHX3,WIZ,TET2,PBX2,SRRM2,SOX13,AGO4,CELF2,NCOA1,CPEB3,ASCC1,FOXJ2,ARID2,RXRB,AKAP1 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | SLIRP,PA2G4,SF3B6,THOC6,SNRPA | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000272933 | ENST00000607967 | exon_skip_74243 | chr11:65540012-65540153 | -42.61 | -0.4097 | LTBP3 | ENST00000301873 | In-frame | ENSG00000272933 | ENST00000607967 | exon_skip_353131 | chr20:58669290-58669453 | -37.22 | -0.2603 | STX16 | ENST00000371141 | Frame-shift | ENSG00000272933 | ENST00000607967 | exon_skip_89597 | chr12:6672349-6672532 | -30.80 | -0.2095 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame | ENSG00000272933 | ENST00000607967 | exon_skip_334333 | chr2:227330625-227330846 | -20.91 | -0.1005 | MFF | ENST00000353339 | Frame-shift | ENSG00000272933 | ENST00000607967 | exon_skip_363747 | chr22:23877720-23877869 | -35.46 | -0.2533 | SLC2A11 | ENST00000345044 | Frame-shift | ENSG00000272933 | ENST00000607967 | exon_skip_460899 | chr6:85538837-85538864 | -6.50 | -0.2407 | SNX14 | ENST00000314673 | In-frame | ENSG00000272933 | ENST00000607967 | exon_skip_140155 | chr16:291189-291297 | -27.62 | -0.2735 | AXIN1 | ENST00000262320 | In-frame | ENSG00000272933 | ENST00000607967 | exon_skip_140339 | chr16:635611-635774 | -30.78 | -0.2350 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000272933 | ENST00000607967 | exon_skip_305660 | chr19:35269802-35270003 | -45.50 | -0.2286 | USF2 | ENST00000222305 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000272933 | hsa-mir-590 | ENST00000607967 | chr10:102643222-102643324 | 157.00 | -71.57 | 103 | NA | ENSG00000272933 | hsa-mir-590 | ENST00000607967 | chr10:102642848-102642930 | 144.00 | -84.30 | 86 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272933.1 | ENST00000607967.1 | 72 | 65 | 283 |
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