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lncRNA: ENSG00000272927

Summary for RP11-1191J2.5

Gene summary

Gene information	Ensembl ID	ENSG00000272927
	Gene symbol	RP11-1191J2.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-1191J2.5

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000272927	2.889422e+01	3.248595e+00	7.703741e-01	4.216906e+00	2.480000e-05	1.236900e-04	UP	CHOL
ENSG00000272927	1.865414e+02	2.221415e+00	2.632239e-01	8.439258e+00	3.190000e-17	5.770000e-16	UP	KIRP
ENSG00000272927	2.413921e+01	-1.060713e+00	3.373865e-01	-3.143911e+00	1.667061e-03	4.093804e-03	DOWN	UCEC
ENSG00000272927	4.412080e+01	3.374933e+00	8.625654e-01	3.912670e+00	9.130000e-05	1.682528e-03	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000272927	3.482042e-01	1.907942e-02	CHOL	2.086579e-02
ENSG00000272927	-3.717814e-01	3.341394e-04	KICH	5.155407e-04

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lncRNA-Protein interaction for RP11-1191J2.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000001497	LAS1L	52.98	90.4	Q9Y4W2	Epi	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000132600	PRMT7	35.45	90.5939	Q9NVM4	Epi	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000162227	TAF6L	10.58	90.6822	Q9Y6J9	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000141258	SGSM2	47.5	92.8616	O43147	TF	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000256223	ZNF10	12.97	90.3198	P21506	TF	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000120798	NR2C1	8.81	90.5643	P13056	TF	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000102878	HSF4	6.33	92.9286	Q9ULV5	TF	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000221944	TIGD1	5.4	91.9652	Q96MW7	TF	NA
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000126456	IRF3	2.8	90.5853	Q14653	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000272927	ENST00000609172	RP11-1191J2.5	ENSG00000013573	DDX11	70.13	94.5953	Q96FC9	RBP	NA

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lncRNA-DNA interaction for RP11-1191J2.5

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-1191J2.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,IDH3A,L2HGDH,GGCX,ATP2A2,SNX2,SEC23B,AGFG1,EIF3L,GNS,ACLY,EIF4G2,RAB31,HSPA8,M6PR,USP9X,HSPA9,ARSB,MYH9,UHRF1BP1L,SNX12,ACVR1,CDH5,HUWE1,CCT5,HSPA4,EPRS1,SSR3,YME1L1,ACO2,UGGT1,USP32,LSM12,ACTR3,ABCE1,DYNC1I2,ITGAV,MCMBP,DOCK7,SF3A1,EIF4G1,SEC23A,TMLHE,PRMT5,DDB1,VPS26A,NCOA2,ABHD5,CSTF2,PSMD1,RAB6A,PSMC1,ACTR2,RPN2,CAP1,PTDSS1,CLTC,TARS1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000272927	ENST00000609172	exon_skip_41813	chr10:68337857-68337996	-24.10	-0.1975	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_87733	chr12:120571190-120571291	-14.35	-0.1772	RNF10	ENST00000325954	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_114365	chr14:74290026-74290118	-15.34	-0.1942	ABCD4	ENST00000356924	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_152672	chr17:42540949-42541206	-24.26	-0.1011	NAGLU	ENST00000225927	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_319223	chr19:43526200-43526349	-19.81	-0.1693	ETHE1	ENST00000292147	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_374375	chr3:49675182-49675309	-16.72	-0.1990	APEH	ENST00000296456	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_382458	chr3:38131595-38131638	-9.32	-4.6600	ACAA1	ENST00000333167	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_431827	chr4:109696409-109696486	-7.68	-0.1371	CASP6	ENST00000265164	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_433210	chr4:177436275-177436351	-12.89	-0.1953	AGA	ENST00000264595	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_442657	chr5:74730259-74730398	-14.71	-0.1236	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_470226	chr7:103307595-103307708	-14.12	-0.1345	PMPCB	ENST00000249269	Frame-shift
ENSG00000272927	ENST00000609172	exon_skip_339830	chr2:69423581-69423717	-14.12	-0.2107	NFU1	ENST00000410022	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000272927	hsa-mir-224	ENST00000609172	chr4:661618-661698	189.00	-76.53	78	NA
ENSG00000272927	hsa-mir-224	ENST00000609172	chr4:661329-661405	157.00	-63.10	75	NA
ENSG00000272927	hsa-mir-224	ENST00000609172	chr4:661854-661946	151.00	-54.14	80	NA
ENSG00000272927	hsa-mir-224	ENST00000609172	chr4:661487-661573	150.00	-61.16	84	NA
ENSG00000272927	hsa-mir-224	ENST00000609172	chr4:661210-661265	148.00	-67.21	55	NA
ENSG00000272927	hsa-mir-452	ENST00000609172	chr4:661484-661576	171.00	-62.88	85	NA
ENSG00000272927	hsa-mir-452	ENST00000609172	chr4:661761-661849	161.00	-76.53	73	NA
ENSG00000272927	hsa-mir-452	ENST00000609172	chr4:661305-661395	145.00	-72.42	67	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661326-661403	172.00	-72.29	86	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661766-661860	168.00	-87.22	93	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661543-661624	162.00	-61.62	76	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661210-661288	160.00	-90.03	81	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661423-661512	158.00	-99.58	91	NA
ENSG00000272927	hsa-mir-22	ENST00000609172	chr4:661644-661731	150.00	-81.49	88	NA

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Variants for RP11-1191J2.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000272927	ENST00000609172	ACTR3	ENSG00000115091	ENST00000535589	-0.1011	457	-	PCPG
ENSG00000272927	ENST00000609172	L2HGDH	ENSG00000087299	ENST00000261699	-0.2022	552	-	CHOL,KIRP
ENSG00000272927	ENST00000609172	L2HGDH	ENSG00000087299	ENST00000555423	-0.1263	655	-	CHOL,KIRP
ENSG00000272927	ENST00000609172	L2HGDH	ENSG00000087299	ENST00000555610	-0.1682	1	-	CHOL,KIRP
ENSG00000272927	ENST00000609172	SEC23A	ENSG00000100934	ENST00000548032	-0.1121	1	-	CHOL
ENSG00000272927	ENST00000609172	SEC23A	ENSG00000100934	ENST00000557280	-0.1339	425	-	CHOL
ENSG00000272927	ENST00000609172	SEC23A	ENSG00000100934	ENST00000553970	-0.1339	425	-	CHOL
ENSG00000272927	ENST00000609172	GGCX	ENSG00000115486	ENST00000430215	-0.1029	125	-	CHOL
ENSG00000272927	ENST00000609172	GGCX	ENSG00000115486	ENST00000428479	-0.1006	17	-	CHOL
ENSG00000272927	ENST00000609172	TMLHE	ENSG00000185973	ENST00000369439	-0.5517	248	-	CHOL
ENSG00000272927	ENST00000609172	SSR3	ENSG00000114850	ENST00000463503	-0.4174	49	-	PCPG
ENSG00000272927	ENST00000609172	SSR3	ENSG00000114850	ENST00000496050	-0.5215	183	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000346169	-0.1057	39	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000414031	-0.1057	39	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000392537	-0.1057	41	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000382330	-0.2420	140	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000350481	-0.1057	39	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000342981	-0.1007	34	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000424196	-0.1057	41	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000434061	-0.1057	41	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000319274	-0.1057	41	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000435046	-0.1057	45	-	PCPG
ENSG00000272927	ENST00000609172	EIF4G1	ENSG00000114867	ENST00000422614	-0.1166	1	-	PCPG
ENSG00000272927	ENST00000609172	GNS	ENSG00000135677	ENST00000542058	-0.1008	394	-	PCPG
ENSG00000272927	ENST00000609172	CDH5	ENSG00000179776	ENST00000539168	-0.1422	94	-	KIRP
ENSG00000272927	ENST00000609172	RAB31	ENSG00000168461	ENST00000581109	-0.7789	1	-	PCPG

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000272927.1	ENST00000609172.1	161	108	593

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential