 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PHF1,RBM6,ZBED5,GLI4,RBM39,CENPT,TTC14,HSF4,RBM5,SRRM2,CIRBP,DDX56,ZFP62,ZNF44,MYSM1,SGSM2,AKAP8,ZXDC,ZNF84,RBM4B,DMTF1,TRA2A,MYEF2,ZNF69,DHX34,NR2C1,ZMAT1,ZNF83,THAP9,NSUN6,RNPC3,THOC1,RBM33,DDX17,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RBM5,E4F1,SRRM2,ZNF69,ZNF83,DDX17,ZMAT1,RBM6,CIRBP,ZFP2,SRSF5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_176593 | ENSG00000272894.4 | chr7 | 7565947 | - | lincRNA | RP5-1159O4.1 | ENST00000609497.4 | lincRNA | RP5-1159O4.1-001 |
| Edited-associated DElncRNAs in cancer. |
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| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000272894 | LncEditing_176593 | UCEC | chr7_7565947_- | 3.908913e+00 | 1.897360e+00 | 9.589805e-01 | 7.987942e+00 | 1.372102e-15 | 3.882424e-15 | UP | | ENSG00000272894 | LncEditing_176593 | KIRC | chr7_7565947_- | 2.641021e+00 | 1.462968e+00 | 1.173437e+00 | 6.816626e+00 | 9.320324e-12 | 1.473404e-11 | UP | | ENSG00000272894 | LncEditing_176593 | GBM | chr7_7565947_- | 3.480399e+00 | 1.473889e+00 | 8.066957e-01 | 5.983207e+00 | 2.187864e-09 | 7.051721e-09 | UP | | ENSG00000272894 | LncEditing_176593 | LGG | chr7_7565947_- | 2.926015e+00 | 1.593283e+00 | 1.140336e+00 | 8.702562e+00 | 3.244733e-18 | 8.677201e-18 | UP | | ENSG00000272894 | LncEditing_176593 | KICH | chr7_7565947_- | 2.638660e+00 | 1.185047e+00 | 8.659046e-01 | 4.315351e+00 | 1.593493e-05 | 7.210258e-05 | UP | | ENSG00000272894 | LncEditing_176593 | KIRP | chr7_7565947_- | 2.800475e+00 | 2.039298e+00 | 2.185322e+00 | 4.020909e+00 | 5.797389e-05 | 7.523202e-05 | UP | | ENSG00000272894 | LncEditing_176593 | OV | chr7_7565947_- | 1.819578e+00 | 1.126778e+00 | 1.446339e+00 | 7.380241e+00 | 1.580027e-13 | 3.818225e-13 | UP | | ENSG00000272894 | LncEditing_176593 | LUAD | chr7_7565947_- | 3.531484e+00 | 2.805650e+00 | 3.012597e+00 | 4.114501e+00 | 3.880176e-05 | 4.444752e-05 | UP | | ENSG00000272894 | LncEditing_176593 | STAD | chr7_7565947_- | 2.600403e+00 | 2.456305e+00 | 1.215877e+01 | 2.562095e+00 | 1.040428e-02 | 1.072637e-02 | UP | | ENSG00000272894 | LncEditing_176593 | PRAD | chr7_7565947_- | 5.263183e+00 | 3.186730e+00 | 1.381485e+00 | 8.709352e+00 | 3.056156e-18 | 1.038039e-17 | UP | | ENSG00000272894 | LncEditing_176593 | BRCA | chr7_7565947_- | 2.246399e+00 | 1.291309e+00 | 1.251910e+00 | 1.043692e+01 | 1.681823e-25 | 2.699084e-25 | UP | | ENSG00000272894 | LncEditing_176593 | PAAD | chr7_7565947_- | 2.290651e+00 | 1.417201e+00 | 1.443599e+00 | 3.680165e+00 | 2.330827e-04 | 3.196562e-04 | UP | | ENSG00000272894 | LncEditing_176593 | ESCA | chr7_7565947_- | 1.955852e+00 | 1.584249e+00 | 3.289495e+00 | 2.162833e+00 | 3.055401e-02 | 3.107288e-02 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000272894 | LncEditing_176593 | -3.544702e-01 | 8.733333e-04 | 1.857974e-03 | | ENSG00000272894 | LncEditing_176593 | -4.389006e-01 | 7.409310e-03 | 2.177308e-02 | | ENSG00000272894 | LncEditing_176593 | -3.660611e-01 | 1.692511e-03 | 2.933004e-03 | | ENSG00000272894 | LncEditing_176593 | -7.373308e-01 | 3.155519e-04 | 3.795357e-03 | | ENSG00000272894 | LncEditing_176593 | -4.491910e-01 | 1.007983e-05 | 2.769328e-05 | | ENSG00000272894 | LncEditing_176593 | -3.957791e-01 | 2.840985e-10 | 1.015652e-08 | | ENSG00000272894 | LncEditing_176593 | -3.601566e-01 | 4.704437e-03 | 7.742254e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272894.4 | ENST00000609497.4 | 115 | 248 | 595 | | ENSG00000272894.4 | ENST00000609307.1 | 166 | 971 | 1471 | | ENSG00000272894.4 | ENST00000608807.1 | 35 | 141 | 245 |
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