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lncRNA: ENSG00000272720 |
Summary for CTA-228A9.3 |
Gene summary |
Gene information | Ensembl ID | ENSG00000272720 | Gene symbol | CTA-228A9.3 |
Gene name | ||
HGNC | ||
Entrez ID | ||
Gene type | lincRNA | |
Synonyms | ||
UniProtAcc |
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Structure and expression level for CTA-228A9.3 |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000272720 | 1.176230e+02 | 2.443958e+00 | 3.727888e-01 | 6.555878e+00 | 5.530000e-11 | 7.530000e-10 | UP | CHOL |
ENSG00000272720 | 9.834620e+01 | 2.701942e+00 | 1.771062e-01 | 1.525605e+01 | 1.500000e-52 | 4.030000e-51 | UP | KIRC |
ENSG00000272720 | 8.692834e+01 | 1.390531e+00 | 3.550513e-01 | 3.916422e+00 | 8.990000e-05 | 4.753580e-04 | UP | BLCA |
ENSG00000272720 | 1.401425e+02 | 2.185125e+00 | 6.619451e-01 | 3.301067e+00 | 9.631770e-04 | 7.690413e-03 | UP | CESC |
ENSG00000272720 | 8.146891e+01 | 1.830846e+00 | 2.362847e-01 | 7.748471e+00 | 9.300000e-15 | 1.250000e-13 | UP | KIRP |
ENSG00000272720 | 8.466336e+01 | 1.541586e+00 | 2.390860e-01 | 6.447830e+00 | 1.130000e-10 | 7.690000e-10 | UP | UCEC |
ENSG00000272720 | 1.690322e+02 | 1.696786e+00 | 1.653485e-01 | 1.026188e+01 | 1.050000e-24 | 4.880000e-23 | UP | PRAD |
ENSG00000272720 | 7.720910e+01 | 1.943583e+00 | 1.927801e-01 | 1.008186e+01 | 6.650000e-24 | 5.310000e-23 | UP | LUSC |
ENSG00000272720 | 6.388580e+01 | 1.971322e+00 | 1.936427e-01 | 1.018020e+01 | 2.430000e-24 | 3.350000e-23 | UP | LUAD |
ENSG00000272720 | 7.339913e+01 | 1.070006e+00 | 1.865868e-01 | 5.734626e+00 | 9.770000e-09 | 4.720000e-08 | UP | COAD |
ENSG00000272720 | 1.203294e+02 | 1.620658e+00 | 1.954775e-01 | 8.290764e+00 | 1.130000e-16 | 4.460000e-15 | UP | STAD |
ENSG00000272720 | 6.476140e+01 | 1.406343e+00 | 3.247715e-01 | 4.330254e+00 | 1.490000e-05 | 1.405080e-04 | UP | READ |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000272720 | 7.023295e-01 | 7.576544e-08 | CHOL | 5.792612e-06 |
ENSG00000272720 | 3.403332e-01 | 2.083288e-16 | PRAD | 2.199773e-15 |
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lncRNA-Protein interaction for CTA-228A9.3 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272720 | ENST00000609162 | CTA-228A9.3 | ENSG00000122965 | RBM19 | 82.04 | 90.3668 | Q9Y4C8 | RBP | NA |
ENSG00000272720 | ENST00000609162 | CTA-228A9.3 | ENSG00000137776 | SLTM | 72.72 | 92.8099 | Q9NWH9 | RBP | NA |
ENSG00000272720 | ENST00000609162 | CTA-228A9.3 | ENSG00000162775 | RBM15 | 63.7 | 90.0889 | Q96T37 | RBP | NA |
ENSG00000272720 | ENST00000609162 | CTA-228A9.3 | ENSG00000133226 | SRRM1 | 33.06 | 93.1326 | Q8IYB3 | RBP | NA |
ENSG00000272720 | ENST00000609162 | CTA-228A9.3 | ENSG00000167978 | SRRM2 | 23.85 | 95.8772 | Q9UQ35 | RBP | NA |
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