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lncRNA: ENSG00000272501 |
Summary for XXbac-BPG299F13.17 |
Gene summary |
Gene information | Ensembl ID | ENSG00000272501 | Gene symbol | XXbac-BPG299F13.17 |
Gene name | ||
HGNC | ||
Entrez ID | ||
Gene type | antisense | |
Synonyms | ||
UniProtAcc |
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Structure and expression level for XXbac-BPG299F13.17 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000272501 | 1.300520e+02 | -1.960144e+00 | 3.072784e-01 | -6.379047e+00 | 1.780000e-10 | 3.370000e-09 | DOWN | GBM |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for XXbac-BPG299F13.17 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000127511 | SIN3B | 63.84 | 91.733 | O75182 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000182979 | MTA1 | 61.26 | 95.7799 | Q13330 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000108773 | KAT2A | 53.83 | 91.6186 | Q92830 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000111653 | ING4 | 24.66 | 91.8948 | Q9UNL4 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000155666 | KDM8 | 13.23 | 91.0591 | Q8N371 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000132600 | PRMT7 | 74.81 | 94.4425 | Q9NVM4 | Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000198919 | DZIP3 | 62.35 | 92.3382 | Q86Y13 | RBP,Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000162227 | TAF6L | 26.18 | 95.278 | Q9Y6J9 | Epi | NA |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000070476 | ZXDC | 40.19 | 95.3256 | Q2QGD7 | TF | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000166432 | ZMAT1 | 35.64 | 94.4894 | Q5H9K5 | TF | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000221944 | TIGD1 | 27.79 | 94.2543 | Q96MW7 | TF | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000196378 | ZNF34 | 16.95 | 94.8366 | Q8IZ26 | TF | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000126456 | IRF3 | 4.7 | 91.5633 | Q14653 | TF | NA |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000079134 | THOC1 | 70.27 | 94.5086 | Q96FV9 | RBP | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000198919 | DZIP3 | 62.35 | 92.0026 | Q86Y13 | RBP,Epi | NA |
ENSG00000272501 | ENST00000606367 | XXbac-BPG299F13.17 | ENSG00000071894 | CPSF1 | 44.15 | 94.2977 | Q10570 | RBP | NA |
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