 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,RBM19,ILF3,GLI4,PBX2,RBM39,EDC3,IRF3,JMJD6,CIRBP,IMP3,TIGD5,MZF1,MYSM1,NRF1,AKAP8,ZNF2,ZXDC,SUGP2,DMTF1,ZNF77,RBM28,ZNF74,TBP,DDX55,KMT2B,STAT2,ZBTB5,HESX1,ZFP14,RNPC3,ZFP69,SAFB2,THOC1,PNPT1,CHTOP,CWC22,TFAP4,LSM5,ZZZ3,ZBED5,SCAF4,PA2G4,CENPT,TTC14,RC3H1,PCBP2,MRM1,SUGP1,SRSF4,RBMX,RBM4B,U2AF2,CSTF3,RBM26,CPSF1,RNPS1,RBM14,ZBTB3,ADNP,MYEF2,MBD1,SURF6,NFYC,DHX34,FUBP1,CPSF4,RBM15,PPIE,CPSF7,SF3B6,NELFE,THOC2,USF1,TSN,CXXC1,ZNF34,MOV10,DDX17,E2F5,SRRM2,PUS7,E2F6,HSF1,PHF1,FOXJ3,ZC3H8,TGIF2,DDX49,TTF1,HSF4,NOL9,THOC6,ILF2,NIP7,MEX3A,ZFP62,ZNF48,SGSM2,CENPA,CELF1,PSPC1,REXO4,TIGD1,RBM45,DDX51,MBD3,E2F4,MBD4,AGO3,PCBP4,THAP3,APEX1,SRSF2,MBD6,DDX31,ZGPAT,PBX4,ZMAT1,ZNF83,ELK1,NSUN6,ZNF3,NXF1,ZNF8,ZNF18,NKRF,DDX11,SOX12,KDM2B,RBM6,HMGN3,CPSF3,KHDC1,NOP2,RBM48,E2F1,GMEB2,XPO1,RBM5,SMAD4,DOT1L,ZNF84,THOC5,DDX42,RXRB,TRA2A,RBM8A,CSTF2,AHDC1,NAIF1,HINFP,NR2C1,ZFP3,USF2,SFPQ,RBM33,NOL8,SRSF7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | E4F1,ZNF3,PBX4,CPSF7,ZNF48,ZMAT1,MZF1,USF1,CIRBP,STAT2,SRSF5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000272455 | ENST00000607307 | exon_skip_446627 | chr5:177491806-177491925 | -19.89 | -0.1715 | PDLIM7 | ENST00000355841 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_462673 | chr6:138926400-138926481 | -10.01 | -0.1472 | REPS1 | ENST00000450536 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272455 | ENST00000607307 | exon_skip_436035 | chr5:79656957-79657001 | -9.44 | -0.2484 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_5818 | chr1:45568484-45568684 | -20.79 | -0.1045 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_309204 | chr19:49181348-49181461 | -19.27 | -0.2072 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_380242 | chr3:186784961-186785101 | -13.29 | -0.1055 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_38175 | chr1:234398381-234398553 | -15.73 | -0.1092 | TARBP1 | ENST00000040877 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_111863 | chr14:23565815-23565892 | -13.21 | -0.2278 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_114365 | chr14:74290026-74290118 | -12.86 | -0.1692 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_290158 | chr17:42953723-42953778 | -7.85 | -0.2617 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_370518 | chr22:50247691-50247776 | -14.46 | -0.2126 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_382458 | chr3:38131595-38131638 | -7.77 | -0.3532 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272455 | ENST00000607307 | exon_skip_470226 | chr7:103307595-103307708 | -11.68 | -0.1424 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_345 | ENSG00000272455.1 | chr1 | 1409293 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_354 | ENSG00000272455.1 | chr1 | 1409377 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_355 | ENSG00000272455.1 | chr1 | 1409378 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_363 | ENSG00000272455.1 | chr1 | 1409513 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_373 | ENSG00000272455.1 | chr1 | 1409621 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_374 | ENSG00000272455.1 | chr1 | 1409622 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_375 | ENSG00000272455.1 | chr1 | 1409626 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 | | LncEditing_379 | ENSG00000272455.1 | chr1 | 1409671 | + | lincRNA | RP4-758J18.13 | ENST00000607307.1 | lincRNA | RP4-758J18.13-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000272455 | LncEditing_374 | UCS | chr1_1409622_+ | 7.159497e+00 | 3.388090e+00 | 9.264527e-01 | 3.433720e+00 | 5.953596e-04 | 1.498993e-03 | UP | | ENSG00000272455 | LncEditing_375 | UCS | chr1_1409626_+ | 5.216215e+00 | 3.973572e+00 | 2.547337e+00 | 2.093451e+00 | 3.630889e-02 | 3.820429e-02 | UP | | ENSG00000272455 | LncEditing_379 | UCS | chr1_1409671_+ | 5.319303e+00 | 3.299229e+00 | 1.451151e+00 | 2.806288e+00 | 5.011590e-03 | 7.608690e-03 | UP | | ENSG00000272455 | LncEditing_354 | DLBC | chr1_1409377_+ | 4.407876e+00 | 2.697949e+00 | 1.411990e+00 | 2.526782e+00 | 1.151130e-02 | 1.643437e-02 | UP | | ENSG00000272455 | LncEditing_363 | DLBC | chr1_1409513_+ | 4.837234e+00 | 2.449966e+00 | 1.018931e+00 | 3.655639e+00 | 2.565424e-04 | 1.386550e-03 | UP | | ENSG00000272455 | LncEditing_373 | DLBC | chr1_1409621_+ | 4.441016e+00 | 2.332260e+00 | 1.076239e+00 | 3.787962e+00 | 1.518883e-04 | 9.851039e-04 | UP | | ENSG00000272455 | LncEditing_374 | DLBC | chr1_1409622_+ | 4.496708e+00 | 2.637435e+00 | 1.299151e+00 | 2.489775e+00 | 1.278240e-02 | 1.758548e-02 | UP | | ENSG00000272455 | LncEditing_379 | DLBC | chr1_1409671_+ | 4.181745e+00 | 2.622463e+00 | 1.485481e+00 | 2.868661e+00 | 4.122134e-03 | 8.429949e-03 | UP | | ENSG00000272455 | LncEditing_354 | GBM | chr1_1409377_+ | 3.856210e+00 | 2.440635e+00 | 1.515319e+00 | 4.123794e+00 | 3.726830e-05 | 5.542290e-05 | UP | | ENSG00000272455 | LncEditing_363 | GBM | chr1_1409513_+ | 3.587443e+00 | 2.148919e+00 | 1.352549e+00 | 7.281206e+00 | 3.308485e-13 | 3.256665e-12 | UP | | ENSG00000272455 | LncEditing_373 | GBM | chr1_1409621_+ | 3.018954e+00 | 1.935555e+00 | 1.559329e+00 | 6.860643e+00 | 6.855150e-12 | 4.048041e-11 | UP | | ENSG00000272455 | LncEditing_374 | GBM | chr1_1409622_+ | 3.312452e+00 | 2.356852e+00 | 2.036501e+00 | 4.194251e+00 | 2.737753e-05 | 4.186847e-05 | UP | | ENSG00000272455 | LncEditing_375 | GBM | chr1_1409626_+ | 3.279223e+00 | 2.494845e+00 | 2.535474e+00 | 3.269709e+00 | 1.076582e-03 | 1.321631e-03 | UP | | ENSG00000272455 | LncEditing_379 | GBM | chr1_1409671_+ | 3.035682e+00 | 2.477301e+00 | 3.410042e+00 | 2.648347e+00 | 8.088654e-03 | 8.915152e-03 | UP | | ENSG00000272455 | LncEditing_379 | MESO | chr1_1409671_+ | 3.427959e+00 | 1.534168e+00 | 8.621484e-01 | 4.402721e+00 | 1.069017e-05 | 3.911346e-05 | UP | | ENSG00000272455 | LncEditing_363 | UVM | chr1_1409513_+ | 3.234848e+00 | 2.002644e+00 | 1.445521e+00 | 2.886751e+00 | 3.892417e-03 | 5.086915e-03 | UP | | ENSG00000272455 | LncEditing_373 | UVM | chr1_1409621_+ | 3.385701e+00 | 1.705919e+00 | 1.011219e+00 | 5.677778e+00 | 1.364558e-08 | 1.982623e-07 | UP | | ENSG00000272455 | LncEditing_363 | BLCA | chr1_1409513_+ | 3.310987e+00 | 1.825479e+00 | 1.164162e+00 | 8.281507e+00 | 1.216266e-16 | 3.482361e-16 | UP | | ENSG00000272455 | LncEditing_373 | BLCA | chr1_1409621_+ | 3.497192e+00 | 1.693200e+00 | 9.556165e-01 | 9.928169e+00 | 3.139692e-23 | 2.439989e-22 | UP | | ENSG00000272455 | LncEditing_379 | BLCA | chr1_1409671_+ | 2.910600e+00 | 1.866915e+00 | 1.560889e+00 | 5.817859e+00 | 5.960622e-09 | 9.057482e-09 | UP | | ENSG00000272455 | LncEditing_363 | LGG | chr1_1409513_+ | 2.914410e+00 | 1.817372e+00 | 1.467674e+00 | 8.435443e+00 | 3.299518e-17 | 8.202323e-17 | UP | | ENSG00000272455 | LncEditing_373 | LGG | chr1_1409621_+ | 2.767321e+00 | 1.706461e+00 | 1.433727e+00 | 1.110898e+01 | 1.134540e-28 | 5.846610e-28 | UP | | ENSG00000272455 | LncEditing_373 | COAD | chr1_1409621_+ | 3.041318e+00 | 1.644816e+00 | 1.127687e+00 | 9.587472e+00 | 9.026965e-22 | 4.090944e-21 | UP | | ENSG00000272455 | LncEditing_363 | LUSC | chr1_1409513_+ | 3.917071e+00 | 1.720847e+00 | 8.427040e-01 | 1.165826e+01 | 2.082632e-31 | 1.770237e-30 | UP | | ENSG00000272455 | LncEditing_373 | LUSC | chr1_1409621_+ | 3.563099e+00 | 1.565945e+00 | 8.430999e-01 | 1.327264e+01 | 3.336118e-40 | 7.696901e-39 | UP | | ENSG00000272455 | LncEditing_374 | LUSC | chr1_1409622_+ | 3.856519e+00 | 1.902919e+00 | 9.812720e-01 | 9.083583e+00 | 1.050582e-19 | 2.671952e-19 | UP | | ENSG00000272455 | LncEditing_379 | LUSC | chr1_1409671_+ | 3.287062e+00 | 1.892566e+00 | 1.255563e+00 | 8.602853e+00 | 7.775878e-18 | 1.708577e-17 | UP | | ENSG00000272455 | LncEditing_379 | HNSC | chr1_1409671_+ | 2.105183e+00 | 1.209825e+00 | 1.251333e+00 | 6.577721e+00 | 4.777143e-11 | 6.574050e-11 | UP | | ENSG00000272455 | LncEditing_354 | SKCM | chr1_1409377_+ | 4.419625e+00 | 1.923613e+00 | 8.332603e-01 | 1.078495e+01 | 4.054508e-27 | 1.625818e-26 | UP | | ENSG00000272455 | LncEditing_363 | SKCM | chr1_1409513_+ | 4.184732e+00 | 1.776113e+00 | 8.087919e-01 | 1.282812e+01 | 1.141033e-37 | 1.593511e-36 | UP | | ENSG00000272455 | LncEditing_379 | SKCM | chr1_1409671_+ | 3.250055e+00 | 2.151400e+00 | 1.680140e+00 | 7.307940e+00 | 2.712682e-13 | 3.788400e-13 | UP | | ENSG00000272455 | LncEditing_363 | THCA | chr1_1409513_+ | 2.453985e+00 | 1.307667e+00 | 1.101162e+00 | 9.789128e+00 | 1.253729e-22 | 5.892526e-22 | UP | | ENSG00000272455 | LncEditing_373 | THCA | chr1_1409621_+ | 2.270678e+00 | 1.296024e+00 | 1.236047e+00 | 9.253040e+00 | 2.181971e-20 | 8.713623e-20 | UP | | ENSG00000272455 | LncEditing_379 | THCA | chr1_1409671_+ | 2.120707e+00 | 1.353893e+00 | 1.544566e+00 | 6.038042e+00 | 1.559959e-09 | 2.836711e-09 | UP | | ENSG00000272455 | LncEditing_354 | CHOL | chr1_1409377_+ | 3.613698e+00 | 1.628922e+00 | 8.698994e-01 | 2.886439e+00 | 3.896280e-03 | 8.766629e-03 | UP | | ENSG00000272455 | LncEditing_345 | OV | chr1_1409293_+ | 4.397589e+00 | 2.875792e+00 | 1.631978e+00 | 6.736709e+00 | 1.620139e-11 | 3.172989e-11 | UP | | ENSG00000272455 | LncEditing_354 | OV | chr1_1409377_+ | 4.317199e+00 | 2.498269e+00 | 1.267159e+00 | 1.035443e+01 | 3.995439e-25 | 2.950848e-24 | UP | | ENSG00000272455 | LncEditing_355 | OV | chr1_1409378_+ | 4.618648e+00 | 2.927671e+00 | 1.520410e+00 | 6.228874e+00 | 4.697982e-10 | 8.081935e-10 | UP | | ENSG00000272455 | LncEditing_363 | OV | chr1_1409513_+ | 3.694848e+00 | 2.189825e+00 | 1.325031e+00 | 8.961523e+00 | 3.202230e-19 | 1.356890e-18 | UP | | ENSG00000272455 | LncEditing_373 | OV | chr1_1409621_+ | 3.785993e+00 | 1.958875e+00 | 1.051915e+00 | 1.079443e+01 | 3.657079e-27 | 3.248970e-26 | UP | | ENSG00000272455 | LncEditing_374 | OV | chr1_1409622_+ | 3.904784e+00 | 2.709850e+00 | 1.897426e+00 | 6.469242e+00 | 9.849567e-11 | 1.798744e-10 | UP | | ENSG00000272455 | LncEditing_375 | OV | chr1_1409626_+ | 3.989202e+00 | 2.873775e+00 | 2.113481e+00 | 5.699623e+00 | 1.200729e-08 | 1.806990e-08 | UP | | ENSG00000272455 | LncEditing_379 | OV | chr1_1409671_+ | 3.943608e+00 | 2.728373e+00 | 1.881555e+00 | 6.719485e+00 | 1.823677e-11 | 3.556460e-11 | UP | | ENSG00000272455 | LncEditing_354 | TGCT | chr1_1409377_+ | 5.728100e+00 | 3.384274e+00 | 1.317158e+00 | 6.065450e+00 | 1.315849e-09 | 3.871815e-09 | UP | | ENSG00000272455 | LncEditing_363 | TGCT | chr1_1409513_+ | 5.050294e+00 | 2.739086e+00 | 1.132923e+00 | 7.966950e+00 | 1.626387e-15 | 2.105576e-14 | UP | | ENSG00000272455 | LncEditing_373 | TGCT | chr1_1409621_+ | 4.910181e+00 | 2.819937e+00 | 1.249823e+00 | 7.468110e+00 | 8.135457e-14 | 6.278117e-13 | UP | | ENSG00000272455 | LncEditing_374 | TGCT | chr1_1409622_+ | 5.204291e+00 | 3.233346e+00 | 1.456296e+00 | 6.231770e+00 | 4.611931e-10 | 1.509024e-09 | UP | | ENSG00000272455 | LncEditing_379 | TGCT | chr1_1409671_+ | 4.417488e+00 | 3.619535e+00 | 3.479208e+00 | 3.217750e+00 | 1.292003e-03 | 1.514124e-03 | UP | | ENSG00000272455 | LncEditing_363 | LUAD | chr1_1409513_+ | 3.372821e+00 | 1.540966e+00 | 8.848613e-01 | 1.016396e+01 | 2.871605e-24 | 1.308847e-23 | UP | | ENSG00000272455 | LncEditing_373 | LUAD | chr1_1409621_+ | 3.098543e+00 | 1.467874e+00 | 9.277625e-01 | 1.124514e+01 | 2.447158e-29 | 2.408226e-28 | UP | | ENSG00000272455 | LncEditing_379 | LUAD | chr1_1409671_+ | 2.721274e+00 | 1.619351e+00 | 1.335352e+00 | 7.373664e+00 | 1.660013e-13 | 2.898329e-13 | UP | | ENSG00000272455 | LncEditing_363 | STAD | chr1_1409513_+ | 2.197496e+00 | 1.103914e+00 | 1.006814e+00 | 9.177472e+00 | 4.413312e-20 | 1.974957e-19 | UP | | ENSG00000272455 | LncEditing_373 | STAD | chr1_1409621_+ | 2.120070e+00 | 1.116280e+00 | 1.080598e+00 | 8.868089e+00 | 7.441168e-19 | 2.856770e-18 | UP | | ENSG00000272455 | LncEditing_374 | STAD | chr1_1409622_+ | 2.149977e+00 | 1.177013e+00 | 1.150495e+00 | 7.488473e+00 | 6.967958e-14 | 1.525706e-13 | UP | | ENSG00000272455 | LncEditing_375 | STAD | chr1_1409626_+ | 2.123223e+00 | 1.218371e+00 | 1.247968e+00 | 5.873219e+00 | 4.274132e-09 | 6.245467e-09 | UP | | ENSG00000272455 | LncEditing_363 | CESC | chr1_1409513_+ | 3.385385e+00 | 1.970739e+00 | 1.281094e+00 | 6.447727e+00 | 1.135404e-10 | 2.693284e-10 | UP | | ENSG00000272455 | LncEditing_373 | CESC | chr1_1409621_+ | 3.063990e+00 | 1.844915e+00 | 1.366387e+00 | 8.226620e+00 | 1.925702e-16 | 9.987540e-16 | UP | | ENSG00000272455 | LncEditing_379 | CESC | chr1_1409671_+ | 2.593987e+00 | 2.097216e+00 | 3.260559e+00 | 2.973921e+00 | 2.940206e-03 | 3.167968e-03 | UP | | ENSG00000272455 | LncEditing_363 | PRAD | chr1_1409513_+ | 2.819402e+00 | 1.579526e+00 | 1.196318e+00 | 8.372613e+00 | 5.635421e-17 | 1.716770e-16 | UP | | ENSG00000272455 | LncEditing_373 | PRAD | chr1_1409621_+ | 2.833599e+00 | 1.539128e+00 | 1.135690e+00 | 9.849447e+00 | 6.892216e-23 | 3.207322e-22 | UP | | ENSG00000272455 | LncEditing_379 | PRAD | chr1_1409671_+ | 2.710195e+00 | 1.576619e+00 | 1.279488e+00 | 8.163327e+00 | 3.259197e-16 | 9.488597e-16 | UP | | ENSG00000272455 | LncEditing_363 | BRCA | chr1_1409513_+ | 3.444615e+00 | 1.518256e+00 | 8.460754e-01 | 1.772161e+01 | 2.856366e-70 | 3.146331e-69 | UP | | ENSG00000272455 | LncEditing_373 | BRCA | chr1_1409621_+ | 3.102514e+00 | 1.414083e+00 | 8.821676e-01 | 1.905393e+01 | 6.094903e-81 | 1.107749e-79 | UP | | ENSG00000272455 | LncEditing_374 | BRCA | chr1_1409622_+ | 3.728002e+00 | 1.620269e+00 | 8.318296e-01 | 1.526637e+01 | 1.281066e-52 | 6.250572e-52 | UP | | ENSG00000272455 | LncEditing_379 | BRCA | chr1_1409671_+ | 2.916640e+00 | 1.684494e+00 | 1.262639e+00 | 1.258609e+01 | 2.518277e-36 | 5.944115e-36 | UP | | ENSG00000272455 | LncEditing_354 | ESCA | chr1_1409377_+ | 2.958400e+00 | 1.348824e+00 | 8.825228e-01 | 6.037557e+00 | 1.564647e-09 | 3.989658e-09 | UP | | ENSG00000272455 | LncEditing_363 | ESCA | chr1_1409513_+ | 2.410096e+00 | 1.154076e+00 | 9.413077e-01 | 8.080213e+00 | 6.465348e-16 | 6.131842e-15 | UP | | ENSG00000272455 | LncEditing_373 | ESCA | chr1_1409621_+ | 2.291981e+00 | 1.121075e+00 | 9.692629e-01 | 7.928604e+00 | 2.216228e-15 | 1.880653e-14 | UP | | ENSG00000272455 | LncEditing_374 | ESCA | chr1_1409622_+ | 2.399568e+00 | 1.347867e+00 | 1.201784e+00 | 5.922855e+00 | 3.163998e-09 | 7.596495e-09 | UP | | ENSG00000272455 | LncEditing_375 | ESCA | chr1_1409626_+ | 2.441360e+00 | 1.499055e+00 | 1.421197e+00 | 4.131219e+00 | 3.608453e-05 | 4.750827e-05 | UP | | ENSG00000272455 | LncEditing_379 | ESCA | chr1_1409671_+ | 2.252384e+00 | 1.523545e+00 | 1.772986e+00 | 4.119702e+00 | 3.793627e-05 | 4.982107e-05 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000272455 | LncEditing_373 | -4.810147e-01 | 1.492530e-02 | 4.053935e-02 | | ENSG00000272455 | LncEditing_379 | -5.082522e-01 | 1.327787e-02 | 4.053935e-02 | | ENSG00000272455 | LncEditing_355 | -3.342992e-01 | 2.316543e-02 | 2.488563e-02 | | ENSG00000272455 | LncEditing_374 | -3.382764e-01 | 6.397319e-05 | 2.985416e-04 | | ENSG00000272455 | LncEditing_375 | -4.630107e-01 | 5.565009e-06 | 5.489123e-05 | | ENSG00000272455 | LncEditing_379 | -3.205570e-01 | 2.527679e-04 | 7.902800e-04 | | ENSG00000272455 | LncEditing_354 | -4.003691e-01 | 2.316870e-02 | 3.270875e-02 | | ENSG00000272455 | LncEditing_374 | -3.097588e-01 | 2.859104e-02 | 3.611500e-02 | | ENSG00000272455 | LncEditing_379 | -4.084321e-01 | 3.952050e-03 | 9.728123e-03 | | ENSG00000272455 | LncEditing_374 | -3.234643e-01 | 2.855896e-03 | 3.549585e-03 | | ENSG00000272455 | LncEditing_379 | -4.872263e-01 | 2.737350e-07 | 4.175078e-06 | | ENSG00000272455 | LncEditing_379 | -3.576230e-01 | 6.810488e-03 | 7.527382e-03 | | ENSG00000272455 | LncEditing_375 | -4.019702e-01 | 8.320409e-03 | 1.019828e-02 | | ENSG00000272455 | LncEditing_374 | -3.104847e-01 | 4.272633e-02 | 4.554346e-02 | | ENSG00000272455 | LncEditing_379 | -4.391679e-01 | 3.602924e-02 | 4.073392e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272455.1 | ENST00000607307.1 | 128 | 31 | 417 |
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