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lncRNA: ENSG00000272449 |
Summary for RP3-395M20.12 |
Gene summary |
Gene information | Ensembl ID | ENSG00000272449 | Gene symbol | RP3-395M20.12 |
Gene name | ||
HGNC | ||
Entrez ID | ||
Gene type | lincRNA | |
Synonyms | ||
UniProtAcc |
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Structure and expression level for RP3-395M20.12 |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000272449 | 7.784094e+01 | 1.286425e+00 | 2.088053e-01 | 6.160883e+00 | 7.230000e-10 | 5.110000e-09 | UP | HNSC |
ENSG00000272449 | 6.828724e+01 | 1.376019e+00 | 2.219123e-01 | 6.200734e+00 | 5.620000e-10 | 3.530000e-09 | UP | UCEC |
ENSG00000272449 | 2.312898e+02 | 1.741725e+00 | 1.892320e-01 | 9.204182e+00 | 3.440000e-20 | 9.020000e-19 | UP | PRAD |
ENSG00000272449 | 9.118762e+01 | 2.010913e+00 | 1.443649e-01 | 1.392938e+01 | 4.200000e-44 | 7.250000e-43 | UP | BRCA |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000272449 | 3.399350e-01 | 2.233097e-02 | CHOL | 2.395452e-02 |
ENSG00000272449 | -5.002169e-01 | 5.996456e-07 | KICH | 1.790053e-06 |
ENSG00000272449 | 3.342446e-01 | 7.565685e-16 | PRAD | 7.213110e-15 |
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lncRNA-Protein interaction for RP3-395M20.12 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272449 | ENST00000606645 | RP3-395M20.12 | ENSG00000154832 | CXXC1 | 2.04 | 91.9497 | Q9P0U4 | TF,Epi | NA |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272449 | ENST00000606645 | RP3-395M20.12 | ENSG00000130254 | SAFB2 | 2.55 | 93.8863 | Q14151 | TF,RBP | NA |
ENSG00000272449 | ENST00000606645 | RP3-395M20.12 | ENSG00000154832 | CXXC1 | 2.04 | 91.6501 | Q9P0U4 | TF,Epi | NA |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000272449 | ENST00000606645 | RP3-395M20.12 | ENSG00000204356 | NELFE | 15.39 | 92.1413 | P18615 | RBP | NA |
ENSG00000272449 | ENST00000606645 | RP3-395M20.12 | ENSG00000130254 | SAFB2 | 2.55 | 93.8263 | Q14151 | TF,RBP | NA |
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