lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | GLI4,IRF3,DDX56,IMP3,CENPB,SNRPA,THOC1,LSM3,LSM5,CENPT,ZGLP1,SUGP1,LSM4,CWC15,THYN1,THOC6,RBM42,ATF4,MBD3,PCBP4,THAP3,FOXP1,FIZ1,THOC7,RALY | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | CWC15,CENPB,RBMX2,RBM42,RBM6,THAP3,SRP14 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
Only predicted by TDF | ELF1,UBR5,GTF2I,DDX52,ATF1,SMAD1,ADAT1,SF3A1,ZNF45,FUBP1,PATL1,DNMT1,PPIL4,NFX1,DDX21,SRSF9,TEP1,MLX,ASCC1,STAU1 | Exist in public source | NA |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | UBR5,SMAD1,PAIP1,MAZ,ASCC1,SRSF9,BRF2,RBMX,PHF20,FOXN3,DDX42,NCBP1,NONO,SP2,SART3,DDX59,DNMT1,ADNP2,KAT7,ATF1,SRRM2,DDX3X,RBM7,DDX52 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000272440 | ENST00000606185 | exon_skip_53559 | chr10:101793912-101793998 | -5.08 | -0.2209 | OGA | ENST00000361464 | Frame-shift | ENSG00000272440 | ENST00000606185 | exon_skip_87733 | chr12:120571190-120571291 | -5.31 | -0.1084 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000272440 | ENST00000606185 | exon_skip_300663 | chr19:1425877-1425960 | -4.63 | -0.1187 | DAZAP1 | ENST00000233078 | Frame-shift | ENSG00000272440 | ENST00000606185 | exon_skip_382458 | chr3:38131595-38131638 | -3.36 | -0.1976 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000272440 | ENST00000606185 | exon_skip_92074 | chr12:50142052-50142110 | -2.83 | -0.1286 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000272440 | ENST00000606185 | exon_skip_430434 | chr4:82356536-82356683 | -5.88 | -0.1050 | HNRNPD | ENST00000313899 | In-frame | ENSG00000272440 | ENST00000606185 | exon_skip_445390 | chr5:150403120-150403312 | -8.02 | -0.1542 | CD74 | ENST00000009530 | In-frame | ENSG00000272440 | ENST00000606185 | exon_skip_462144 | chr6:125298713-125298816 | -5.86 | -0.1085 | HDDC2 | ENST00000398153 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272440.1 | ENST00000606185.1 | 44 | 358 | 492 |
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