lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | GPX2,TBRG4,PMM2,NOB1,CEP20,ARHGEF2,EEF2KMT,EPRS1,SMG7,CCT3,PYGO2,C1orf56,TWNK,RTKN,RRNAD1,INTS3,MSTO1,MAFG,UBQLN4,SLC39A1,DARS2,NPRL3,UNKL,ADPRHL1,SPATA5L1,MTX1,EFTUD2,MFSD10,VARS1,DAP3,PYCR2,FAM136A,NDUFS2,PIGM,CHTOP,TFAP4,MRPL10,GOLGA1,UBE2T,TRIM16,QSOX2,RPAP1,IFT140,NOLC1,CTDNEP1,HDGF,IMP4,MRPL24,INTS7,MRM1,ADSS2,UBE2Q1,TFB2M,TMCO1,RCCD1,FAM189B,MARS2,RNPS1,CLK2,NCBP1,MFSD9,C1orf131,MYO19,GPATCH4,MGRN1,RRP12,LAD1,C1orf43,MORC2,PGAP2,ISG20L2,EXD3,MRRF,FLII,NQO1,DOK4,HSPD1,KLHL12,TNFRSF10B,IQGAP3,ALDOA,ELMO3,UBAP2L,C8orf33,ANKS3,CERS2,ETFA,JPT2,TKT,KNOP1,SCAMP3,TMEM186,PARN,TOR4A,SF3B4,ZDHHC9,ARL8A,TPM3,UCK2,UCHL5,MTIF2,RNPEP,COASY,MVP,PLCB3,PLOD3,ANKEF1,ABCC3,CAD,SMARCD1,GOLPH3L,PLS1,AATF,AXIN1,TRAP1,F11R,ATXN2L,NAA35,ABCB6,CSNK2A2,SRXN1,BROX,HARS2,CRTC2,TTLL12,SLC22A18,NOL8 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CGRRF1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000272405 | ENST00000605886 | exon_skip_44998 | chr10:110132304-110132400 | -12.33 | -0.1486 | ADD3 | ENST00000356080 | In-frame | ENSG00000272405 | ENST00000605886 | exon_skip_131398 | chr15:101286213-101286293 | -15.23 | -0.1928 | SNRPA1 | ENST00000254193 | Frame-shift | ENSG00000272405 | ENST00000605886 | exon_skip_423795 | chr4:55888887-55888932 | -10.60 | -0.3533 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | ENSG00000272405 | ENST00000605886 | exon_skip_325891 | chr2:62987930-62988038 | -14.42 | -0.2289 | EHBP1 | ENST00000263991 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000272405 | ENST00000605886 | exon_skip_21610 | chr1:9737497-9737554 | -12.73 | -0.2767 | CLSTN1 | ENST00000377298 | In-frame | ENSG00000272405 | ENST00000605886 | exon_skip_33516 | chr1:156938417-156938513 | -17.80 | -0.2781 | ARHGEF11 | ENST00000361409 | In-frame | ENSG00000272405 | ENST00000605886 | exon_skip_376144 | chr3:100311832-100311877 | -9.59 | -0.3552 | TBC1D23 | ENST00000394144 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000272405 | ENSG00000052749 | RRP12 | ACC,CHOL,COAD,KIRP,PAAD,STAD | CHOL,COAD | | ENSG00000272405 | ENSG00000066117 | SMARCD1 | ACC,CHOL,COAD,KIRP,LGG | CHOL | | ENSG00000272405 | ENSG00000107815 | TWNK | ACC,CHOL,ESCA,KIRP,LGG,STAD | STAD | | ENSG00000272405 | ENSG00000108846 | ABCC3 | ACC,CHOL,ESCA,HNSC,KIRC,KIRP,LIHC,LUSC,PAAD,UCS | KIRC,KIRP | | ENSG00000272405 | ENSG00000144381 | HSPD1 | ACC,CHOL,LUAD,MESO,STAD | LUAD,STAD | | ENSG00000272405 | ENSG00000153531 | ADPRHL1 | BLCA,CHOL,ESCA,LUAD,PAAD | LUAD | | ENSG00000272405 | ENSG00000110628 | SLC22A18 | BRCA,ESCA,KIRP,LIHC,PAAD,UCS | BRCA | | ENSG00000272405 | ENSG00000143457 | GOLPH3L | BRCA,CHOL,ESCA,MESO,PAAD | CHOL | | ENSG00000272405 | ENSG00000035141 | FAM136A | CHOL,ESCA,KIRC,KIRP,LUSC,PAAD | LUSC | | ENSG00000272405 | ENSG00000077152 | UBE2T | CHOL,ESCA,KIRP,PAAD,STAD | CHOL,KIRP,STAD | | ENSG00000272405 | ENSG00000084774 | CAD | CHOL,COAD,KIRC,KIRP,LGG | CHOL,COAD | | ENSG00000272405 | ENSG00000103126 | AXIN1 | CHOL,ESCA,GBM,KIRC,KIRP,LGG,LIHC,MESO,PAAD | KIRP | | ENSG00000272405 | ENSG00000103550 | KNOP1 | CHOL,KIRP,LIHC,MESO,PAAD | CHOL | | ENSG00000272405 | ENSG00000109736 | MFSD10 | CHOL,KIRC,KIRP,PAAD,UCS | CHOL,KIRP | | ENSG00000272405 | ENSG00000114993 | RTKN | CHOL,COAD,ESCA,MESO,PAAD,READ | COAD,READ | | ENSG00000272405 | ENSG00000116521 | SCAMP3 | CHOL,KIRC,LIHC,LUSC,PAAD | CHOL,LIHC | | ENSG00000272405 | ENSG00000116584 | ARHGEF2 | CHOL,COAD,ESCA,MESO,PAAD,READ | CHOL | | ENSG00000272405 | ENSG00000117593 | DARS2 | CHOL,ESCA,HNSC,LUAD,LUSC,PAAD,STAD | LUAD,LUSC,STAD | | ENSG00000272405 | ENSG00000120889 | TNFRSF10B | CHOL,COAD,KIRC,KIRP,PAAD,READ,STAD,UCS | COAD,KIRC,KIRP,READ,STAD | | ENSG00000272405 | ENSG00000125459 | MSTO1 | CHOL,COAD,GBM,MESO,PAAD | CHOL | | ENSG00000272405 | ENSG00000126602 | TRAP1 | CHOL,ESCA,KIRC,KIRP,LGG,LUAD,MESO,PAAD,STAD | LUAD | | ENSG00000272405 | ENSG00000143179 | UCK2 | CHOL,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,STAD | CHOL,LIHC,LUAD,LUSC | | ENSG00000272405 | ENSG00000143314 | MRPL24 | CHOL,ESCA,LIHC,LUSC,PAAD | LUSC | | ENSG00000272405 | ENSG00000143569 | UBAP2L | CHOL,COAD,GBM,LGG,MESO,PAAD,READ | CHOL | | ENSG00000272405 | ENSG00000143570 | SLC39A1 | CHOL,ESCA,KIRC,KIRP,PAAD | CHOL | | ENSG00000272405 | ENSG00000149782 | PLCB3 | CHOL,GBM,LGG,PAAD,STAD | CHOL | | ENSG00000272405 | ENSG00000149925 | ALDOA | CHOL,KIRC,KIRP,LIHC,PAAD | CHOL,KIRC,KIRP,LIHC | | ENSG00000272405 | ENSG00000159166 | LAD1 | CHOL,COAD,PAAD,READ,STAD,UCS | CHOL | | ENSG00000272405 | ENSG00000160767 | FAM189B | CHOL,HNSC,KIRC,KIRP,PAAD | CHOL | | ENSG00000272405 | ENSG00000160818 | GPATCH4 | CHOL,COAD,ESCA,LIHC,PAAD,READ | CHOL | | ENSG00000272405 | ENSG00000163348 | PYGO2 | CHOL,ESCA,GBM,HNSC,PAAD | CHOL | | ENSG00000272405 | ENSG00000163468 | CCT3 | CHOL,ESCA,KIRP,LIHC,MESO,PAAD,STAD | LIHC | | ENSG00000272405 | ENSG00000166965 | RCCD1 | CHOL,GBM,LGG,LUAD,PAAD | LUAD | | ENSG00000272405 | ENSG00000168096 | ANKS3 | CHOL,GBM,KIRC,LGG,LIHC | CHOL,LIHC | | ENSG00000272405 | ENSG00000182307 | C8orf33 | CHOL,KIRP,LIHC,STAD,UCS | LIHC | | ENSG00000272405 | ENSG00000183856 | IQGAP3 | CHOL,ESCA,GBM,KIRC,KIRP,PAAD,STAD | CHOL,GBM,KIRC,KIRP,STAD | | ENSG00000272405 | ENSG00000187535 | IFT140 | CHOL,GBM,KIRC,KIRP,MESO | CHOL | | ENSG00000272405 | ENSG00000198113 | TOR4A | CHOL,ESCA,KIRP,PAAD,STAD,UCS | CHOL,KIRP | | ENSG00000272405 | ENSG00000206053 | JPT2 | CHOL,KIRC,KIRP,LIHC,MESO | CHOL | | ENSG00000272405 | ENSG00000278259 | MYO19 | CHOL,GBM,LGG,PAAD,STAD,UCS | CHOL | | ENSG00000272405 | ENSG00000013364 | MVP | ESCA,KIRC,KIRP,LIHC,PAAD | KIRP | | ENSG00000272405 | ENSG00000135953 | MFSD9 | ESCA,HNSC,LUAD,MESO,PAAD,STAD | LUAD | | ENSG00000272405 | ENSG00000165661 | QSOX2 | ESCA,HNSC,KIRP,LGG,STAD | HNSC,STAD | | ENSG00000272405 | ENSG00000181019 | NQO1 | ESCA,KIRP,LIHC,LUAD,LUSC,PAAD | KIRP,LIHC,LUAD,LUSC | | ENSG00000272405 | ENSG00000059145 | UNKL | HNSC,KIRP,LIHC,LUSC,MESO | LIHC | | ENSG00000272405 | ENSG00000115657 | ABCB6 | HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC | KIRC,KIRP,LUAD,LUSC | | ENSG00000272405 | ENSG00000163931 | TKT | HNSC,KIRP,LIHC,LUAD,LUSC | KIRP,LIHC | | ENSG00000272405 | ENSG00000271303 | SRXN1 | HNSC,KIRP,LIHC,LUAD,LUSC | LIHC,LUAD,LUSC | | ENSG00000272405 | ENSG00000221926 | TRIM16 | KIRP,LGG,LIHC,LUAD,LUSC,UCEC | KIRP,LIHC,LUSC | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000272405 | ENST00000605886 | CGRRF1 | ENSG00000100532 | ENST00000554791 | -0.1008 | 2182 | - | CESC,READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272405.1 | ENST00000605886.1 | 150 | 2889 | 2437 |
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