lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000272301 | ENST00000606980 | exon_skip_1234 | chr1:11658532-11658628 | -12.26 | -0.1727 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000272301 | ENST00000606980 | exon_skip_33832 | chr1:160225061-160225119 | -7.09 | -0.5454 | DCAF8 | ENST00000326837,ENST00000368073,ENST00000368074 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_319223 | chr19:43526200-43526349 | -13.06 | -0.1088 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_382458 | chr3:38131595-38131638 | -6.34 | -0.1510 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_9446 | chr1:147270931-147271005 | -7.44 | -0.1094 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_41813 | chr10:68337857-68337996 | -10.56 | -0.1006 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_53559 | chr10:101793912-101793998 | -8.71 | -0.1613 | OGA | ENST00000361464 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_114365 | chr14:74290026-74290118 | -9.21 | -0.1297 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_133217 | chr16:8635038-8635079 | -6.84 | -0.2974 | METTL22 | ENST00000381920 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_290158 | chr17:42953723-42953778 | -4.59 | -0.2550 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_353131 | chr20:58669290-58669453 | -17.53 | -0.1209 | STX16 | ENST00000371141 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_358821 | chr20:63943652-63943669 | -5.35 | -0.6687 | UCKL1 | ENST00000354216 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_365497 | chr22:38067703-38067770 | -7.76 | -0.1272 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_370518 | chr22:50247691-50247776 | -9.68 | -0.2482 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_436035 | chr5:79656957-79657001 | -4.17 | -0.1017 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_462160 | chr6:127316449-127316502 | -6.80 | -0.1308 | ECHDC1 | ENST00000531967 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_470226 | chr7:103307595-103307708 | -7.29 | -0.1122 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000272301 | ENST00000606980 | exon_skip_476008 | chr7:65970281-65970366 | -10.89 | -0.1534 | GUSB | ENST00000304895 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000272301 | hsa-mir-22 | ENST00000606980 | chr11:76389768-76389857 | 153.00 | -67.53 | 78 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,WDR33 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,MUS81 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RXRB | CESC,CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,C1orf35 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ATAT1 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,COIL | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RBM6 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,TADA2A | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RING1 | CESC,CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ZNF7 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NAA16 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,KAT2A | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NCAPH2 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,EHMT2 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ERCC3 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,PHC1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,EXD3 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,WDR27 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NDUFAF6 | CESC,CHOL,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,HEXIM2 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,VEZF1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NAB1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,PAXBP1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,MBD1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ING5 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,CEP131 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,CLK2 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,KHDC4 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,HEXD | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,MBTD1 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,TIA1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,DPF2 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,SBK1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RBMX | CESC,CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,PMS1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,JADE1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,FBXO46 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,CELF1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RBM5 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,COPS7B | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,CCDC174 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,CPSF7 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,C14orf93 | CESC,CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,RBM14 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,MKS1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,PCIF1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ABI2 | CESC,CHOL,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,FNBP4 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,SRSF1 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,DET1 | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,BUD13 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,MUTYH | CESC,CHOL,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NSMCE4A | CESC,CHOL,LGG,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,LRRC14 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,NFRKB | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ILF3 | CHOL,LGG,ACC,SARC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,ZNF16 | CESC,CHOL,LGG,ACC,KIRP | ENSG00000272301 | RP11-111M22.4,hsa-mir-22,EDC3 | CHOL,LGG,ACC,SARC,KIRP |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272301.1 | ENST00000606980.1 | 74 | 222 | 1 |
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