lncRNAfunc Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

lncRNA summary

leaf

lncRNA structure and expression level

leaf

lncRNA-Protein interaction

leaf

lncRNA-DNA interaction

leaf

lncRNA-RNA interaction

leaf

Variants in lncRNA

leaf

lncRNAs regulate the target genes through functioning as enhancers

leaf

lncRNAs regulate the target genes through recruiting transcript factors

leaf

lncRNAs regulate the alternative splicing events through interacting with splicing factor

leaf

lncRNAs regulate mRNA through targeting the 3'-UTR region

leaf

lncRNAs regulate mRNA by competing with miRNA

leaf

lncRNA coding potential

lncRNA: ENSG00000272172

Summary for RP13-582O9.7

check button Gene summary

Gene informationEnsembl ID

ENSG00000272172

Gene symbol

RP13-582O9.7

Gene name
HGNC
Entrez ID
Gene typeantisense
Synonyms
UniProtAcc

Top

Structure and expression level for RP13-582O9.7

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002721722.430014e+011.414374e+002.804994e-015.042342e+004.600000e-074.440000e-06UPBLCA
ENSG000002721722.816779e+011.141507e+001.639574e-016.962214e+003.350000e-123.100000e-11UPPRAD
ENSG000002721721.906819e+011.521923e+001.481540e-011.027258e+019.370000e-257.780000e-24UPLUSC
ENSG000002721723.062267e+011.743373e+001.301254e-011.339764e+016.240000e-419.610000e-40UPBRCA
ENSG000002721721.663811e+011.058342e+001.534419e-016.897350e+005.300000e-122.910000e-11UPLUAD
ENSG000002721722.599136e+011.558352e+001.881614e-018.281996e+001.210000e-161.620000e-15UPLIHC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002721723.102192e-013.808620e-02CHOL3.901400e-02
ENSG000002721723.223321e-014.014619e-11LIHC1.700850e-10

Top

lncRNA-Protein interaction for RP13-582O9.7

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

Top

lncRNA-DNA interaction for RP13-582O9.7

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP13-582O9.7

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
IDH3A,DIP2B,NEK4,METTL14,SCAPER,KRAS,UTP20,TBC1D5,AIDA,TCF20,KLHL18,TMEM161B,TRIP11,CCNT1,SLC17A5,USP53,LDB1,ZFYVE26,MAN1A2,FGD4,PRPF4B,CSNK1G1,TRIM5,CELF2,SIN3A,ATP11B,RAB8B,PDPK1,CEP120,CALD1,NMD3,DENND2B,SP100,PTPRE,PHF20,TMCC3,REPS1,RAP1A,CLASP2,SNIP1,CNOT7,CDC42BPA,TLN1,ITSN2,NUP133,ABHD2,FAM102B,SEC22B,RIN2,TBCEL,GTF3C3,PELI1,RNF145,SLC38A2,AZI2,FBXW2,IFNAR1,ALMS1,ABL2,SEC23B,KBTBD2,GTF2I,NUP58,TGOLN2,STX7,NIN,KIF1B,SPATA13,EPC2,SLC25A40,ERAP1,DDX42,REV3L,ATP6V0A2,EIF2AK2,ARHGAP32,CTDSPL2,RPRD1A,ARHGAP31,ZMAT3,CD302,SPOPL,POLG,FAM168B,HIF1AN,FOXO1,RIF1,SINHCAF,EPB41L4A,KLHL28,FRS2,DUSP16,SCP2,WDR82,EDC4,SP2,RCHY1,RNF214,SPTY2D1,DCTN4,DLC1,GPATCH2L,RABL3,KCTD10,KMT2D,BAZ1B,TRAPPC8,KCTD18,RSBN1,RNF111,CTTNBP2NL,GMCL1,IFNAR2,EDEM3,VPS13D,FBXL17,TRPM7,LUZP1,TBCCD1,SMURF2,RSF1,SNAPC3,KMT2C,FBXL4,PIKFYVE,RAB3GAP2,THUMPD1,SLC35A5,VPS50,GSPT1,UBTD2,TFDP1,NFKB1,EPG5,MBD5,BMPR2,PDCD6IP,ME2,KIAA1671,GTF2A1,TFIP11,MPHOSPH8,RNF41,SMAD5,ABI2,AKIRIN1,VWA8,GCC2,TEX2,UTP25,F2R,ELK4,WDR3,FEM1B,URB2,ZFYVE9,EMC1,SCAF11,CNOT1,DIABLO,SLU7,SLC35E1,TSTD2,MAP3K1,USP15,CDC14B,TOX4,BAZ2B,DCUN1D1,KIF16B,ARID2,COBLL1,ATF7,KATNAL1,APPL1,CHIC1,MACF1,SH3GLB1,LIMA1,MBNL3,ATP2C1,C5orf24,CCNY,ILK,HAUS6,FARP2,EIF4EBP2,BRAF,DYNC1I2,RPAP3,ARHGEF6,VHL,GARRE1,BCKDHA,SAP130,STK38L,MAPK1,RNF169,ITPRID2,MIER3,USP9X,MAST4,SATB1,MTO1,TNS1,ETS1,SSH1,KLHL5,RBM33,RNF44,SMCHD1,IRF2,KMT2A,ZYG11B,AP3M1,LAMP2,KIF2A,ARHGAP29,POLK,CCDC91,DCAF17,AASDHPPT,PICALM,GOLPH3,NRAS,FAM114A2,USP14,CKAP5,HDHD2,FAM172A,PROS1,USP38,CREB1,PLEKHG1,DENND4C,OXSR1,SENP2,SBNO1,HIPK1,QRICH1,LIMS1,TMEM245,TRAPPC10,LATS2,PI4KA,WDR36,DENND1B,THAP12,SOCS4,SLC9A6,BNIP2,DDX46,CLTC,HCFC2,CREBRF,ARID4B,NCOA1,SON,PIK3C3,TOR1AIP1,BIRC2,PTPRG,PTPN12,ASCC1,BBX,TAF1,CRTC3,VIRMA,SEPTIN7,SGCB,ZMIZ1,TMEM181,KDM1B,SF3B1,DDX24,MIDEAS,RBAK,DNAJC3,RSU1,GCC1,MED13L,SEPTIN2,ADAM9,SKAP2,IGF2R,ITGA6,PDCL,ABCA1,MINDY2,SYNJ2BP,SPAG9,PPP4R1,ARRDC3,HPS5,YTHDC1,PIK3C2A,BIRC6,PPM1A,SWT1,ARL2BP,ATRX,WWC2,MIA3,CERS6,AHNAK,NSD1,DDX52,CNOT4,AHCYL1,KDM4A,MYO9A,EVI5,RNF123,PTPRK,BECN1,MAP4K3,RDX,CAMSAP1,SMCR8,QSER1,MTUS1,NEDD1,PBRM1,SRRM2,SCRN1,ZSWIM8,TESK2,VPS13B,APBB2,PARVA,SNX9,MLLT10,PRRC2C,PHF3,LONP2,MAFG,STRN,SLFN5,GOLIM4,TTC3,KIDINS220,PTBP3,CDC27,SELENOP,TMCO3,FBXO11,GIT2,SAP30L,FBXL14,MKRN2,PHAX,TANGO6,UBE4B,TP53BP2,NDST1,ATR,POM121,BRPF3,TAB2,POC1B,EIF3A,TMCC1,MARCHF7,OSBPL8,GNAQ,OPN3,RLIM,DCAF7,NXT2,CHERP,PPP4R3B,FASTKD2,PCGF5,EIF4G2,CD46,CDC23,SHE,GOLGB1,BACH1,GOLM2,KMT2E,TLK1,ARFGEF1,NOTCH2,ITCH,ARCN1,FYCO1,SRPK1,WAPL,TRAF6,TMEM87B,USP4,CCDC50,WDR11,HACD3,USF3,MBNL1,NPEPPS,BMP2K,LYST,BZW1,HECTD1,PKN2,GTF2H1,TASOR,ARIH1,PUM1,FNDC3A,SEC24B,FOXN2,ACSL3,CTNNB1,FUBP1,SERPINB8,SP4,PKD2,EXOC6B,N4BP1,FBXO21,TP53BP1,VPS37A,G3BP1,GIGYF2,RASSF8,USP34,ERMAP,RPS6KA3,EGLN1,CCNI,CRIM1,ASXL2,USP47,POLR2B,UBE2V1,FRYL,GXYLT1,CEP350,LMBR1,HIPK2,HSPG2,ASH1L,LCOR,RAB18,SLC10A7,GNPTAB,MED13,WDR7,GALK2,SMG6,RAB22A,LTN1,PRPF40A,SKI,CFH,BTN2A1,CDK12,RICTOR,PRKAA1,MEF2A,MYO18A,TUBGCP3,GOSR1,AKAP13,ELF1,VRK2,EIF5,STAM2,PLAA,EPAS1,TRIM33,PIP5K1A,CANX,DOCK1,NEMF,CCNK,NF1,DSTYK,MAML1,CBL,LPIN2,DCAF12,ERLIN1,HMGCS1,UBE2K,FCF1,RTL6,NEDD4,TBK1,CD93,FAM214A,KAT6A,AMMECR1L,PCDHGC3,PIP4K2C,ERBIN,CDV3,CAP1,XRCC5,RIC1,FOXO3,AGPS,MFSD6,FBXO38,IREB2,NSUN3,SART3,FAM219B,ATF2,NCOA2,SNAP23,PRR14L,ROCK1,CHMP3,CNIH1,FAM168A,METAP1,TBC1D2B,LARP4,PARP11,ARL13B,YWHAG,MFSD1,EXOC6,CPEB2,COG5,CHURC1,OSBPL9,MTF1,LMBRD2,LRRC8C,PPARA,RABGAP1,SNX2,PPIG,TVP23B,EIF2S3,EIF3L,ATE1,EMSY,SEC62,G2E3,TMOD3,IDS,BRF2,DYRK1A,MRTFB,USP8,STK4,INPP4A,DCAF1,GNPNAT1,CEP170,KDM3B,MAPK1IP1L,NT5C2,UBQLN1,QTRT2,PIK3CB,TACC1,SNX6,CEP104,SLC30A9,TRIM37,ZMYM5,SMAD4,NCOA7,TET3,PLEKHB2,SPAST,POLR2A,ANKFY1,FGD6,ATRN,CTNND1,PARG,ATP2A2,UHRF2,ANKRD50,RIC8B,M6PR,BICRAL,SNX29,APAF1,GBF1,PCNX1,UBR4,CDC42SE1,SLMAP,STYX,CLCN3,SESTD1,UBR2,FBXW11,ZMYM4,ARMCX3,WDFY3,CLCC1,SDE2,INO80,FTO,LRRC58,VPS36,FAN1,DNAJC21,ATP6V1A,NIPA2,DYNC1LI2,CERT1,ANKRD40,SENP6,KDM6A,SNX1,COG6,BCL9L,KLHDC2,SERINC3,DOCK9,PDZD8,SENP1,SPTLC1,RO60,CACUL1,MAPK9,TMEM30A,DENND5A,CDC42BPB,PIK3CG,TNFAIP3,PIAS3,AFAP1,MCFD2,YTHDC2,TCP1,PDE5A,ARID1A,MARCHF6,TRANK1,ESYT2,RFC1,DSE,NBN,GNL3L,LRBA,POLR1B,EAF1,MFSD14B,STRN3,RASAL2,KAT6B,FCHO2,MFN1,PCYOX1,PEAK1,NECAP1,SNX19,PHKB,SLK,PAK2,ZEB2,CPEB4,PRRC1,COPA,LRP10,CYLD,AP4E1,GNB1,BTBD10,APPBP2,EIF2AK3,SEC23A,MKLN1,PSD3,TIMM23B,SMAD1,SMC2,LNPEP,POGK,MYCBP2,AGFG1,LPCAT3,SNRNP200,SPPL2A,VPS35,COMMD2,SEC63,VTA1,ERCC6L2,ZSWIM6,KAT7,TMEM123,DCP1A,KLF11,TBC1D9,CNOT6L,HBP1,PDE12,ALS2,SETX,SUDS3,HUWE1,KIF3A,ATAD1,TEP1,YME1L1,SPTBN1,FAM13B,ICE2,LSM11,DPP8,ATF1,LATS1,MYD88,TRIM68,RBMS2,CENPC,PPP1R15B,LRCH1,FAM53C,ZRANB1,EEF1A1,TRAPPC11,NUP160,FCHSD2,PIGK,CTBS,UBXN7,CHSY1,RC3H1,TOGARAM1,TUT4,SMG7,MSH3,MAN2A2,HELZ,BTBD9,STARD4,MCL1,TGFBR2,ZFP1,ZDHHC20,USP33,ANKRD27,USP16,MAPK14,TUBGCP4,USP32,TTLL5,WBP11,ELP1,ITPR3,AGO1,DOP1B,PIAS1,SLC25A24,DNMT1,UBE3C,DDX3X,BAZ2A,YIPF6,MYOF,MALT1,EIF3C,NFX1,GAPVD1,DENND4A,RAP1B,USP46,SPRING1,KIAA0232,CCNT2,ANKRD13A,DNAJC24,MSN,TRIP12,MTOR,DIAPH1,KPNA1,CSNK1A1,NDFIP2,TTC37,PPP3CB,CLINT1,CHD6,SLC25A30,DNAJC9,RYBP,MED21,THOC2,PPM1B,HAUS2,TMX3,NCOR1,MTPN,MITF,PGM2,RBBP4,TRRAP,NUP155,AREL1,LNX2,ATXN1L,STX17,SECISBP2L,SEPTIN10,ACTR3,RAB3GAP1,MED14,MEF2D,ADAM10,VPS26A,RAB5A,MAP3K2,DNAJC14,PHACTR2,METTL4,ITPRIPL2,ZC3H11A,FKTN,WASF2,KTN1,MEX3C,GPR107,SGMS1,CCPG1,ANXA7,YIPF5,SEPTIN11,KIF13A,ARNT,RAI1,RSRC2,XPO1,USP42,ARHGEF12,ZBTB6,URB1,ROCK2,ZBED6,HACD4,UEVLD,MTMR1,CEP97,SEC23IP,RBM41,TMLHE,WDR26,CCNYL1,SIKE1,APOOL,MGAT4A,SOS2,SLC30A5,C6orf62,BACE1,TMTC2,GDAP2,IL6ST,AFF1,ARL5B,CHM,FYTTD1,VAMP3,ERCC4,HECTD4,IPO7,MAGT1,SETD2,RNF141,KDM3A,SPG11,GLYR1,VPS13C,IBTK,ENPP4,FER,SMC5,GSK3B,PDSS2,EXOC5,AEBP2,BOD1L1,RNF4,YLPM1,KPNA6,RNF40,EPB41,MTR,MYO5A,HBS1L,CLOCK,CCDC93,MTREX,EXOC2,CNTRL,SCRN3,RBM18,TM2D1,CIC,SMIM14,LZIC,CCDC47,BTBD7,ZW10,IQGAP1,SMARCA2,EEA1,CMTR2,KLF7,ARHGAP5,ATXN7,MPDZ,PPP1CB,CFAP97,UBN1,NUP205,COPB2,RBBP5,RAD23B,SEC14L1,SETD5,TEAD1,PCM1,PDLIM5,VEZT,ZBTB5,DDX50,SH3RF1,SWAP70,C5orf51,PPTC7,ABHD5,TSPYL1,FAM120B,NCOA3,SYNJ1,SBF2,ATP9B,ERC1,C16orf72,PAIP2,RHOT1,YES1,CSNK1G3,HEATR5B,LEPROT,TBC1D9B,FAM20B,DCP2,ZNF28,ANO6,TMEM184C,ARL5A,PPFIA1,CDC14A,RALB,SLC30A7,ITGA2,MED17,TAB3,SPICE1,PREPL,RAB11FIP5,RPRD2,HEATR1,ZFX,AP5M1,KIAA1143,HCFC1,UHMK1,KIAA2026,ENTPD7,SMARCC2,TTC5,PPP1R12A,KIAA1109,TBC1D15,C20orf194,USP6NL,EFCAB14,SMG1,CREBBP,LGALS8,HINT3,ABLIM1,SRP72,POLH,STAG2,ELOA,KDM7A,TRAK2,ARID1B,TMEM33,SH3BP5,ABRAXAS1,GTF2H3,TENT2,MAT2A,SMARCC1,RNF31,BRD3,GANAB,JKAMP,SLTM,RAB35,RB1CC1,KLF13,GPD2,PIK3CA,SGPL1,XIAP,RFWD3,IPO8,SLC35A3,YAP1,CAND1,RPA1,MYSM1,SAMD8,PPP2R5E,FOXN3,UVRAG,RALBP1,NCOA4,FBH1,MTRR,FAM126B,ACTR2,VAMP7,PLSCR4,GPATCH8,CNOT8,ATMIN,TRAM2,TUT7,MED1,RAB14,OGA,CLASP1,CUL2,GON4L,SMG8,CAB39,ZFP36L1,MIS18BP1,MBOAT1,KCTD20,SLC12A2,PTAR1,RABEP1,FNDC3B,BCKDHB,ATP7A,HERC1,DOP1A,NOMO2,RAPGEF1,TBC1D14,ADAM17,PHF6,ATG2B,SLC30A6,SH2B3,WDR47,SUSD6,JMY,VPS4B,NEPRO,FAM104A,FOXJ3,ZNF41,LARP1,CILK1,SLAIN2,ZNF24,LAMC1,GPR180,ACAP2,BCL9,EXOC7,ANAPC1,MON2,ETV3,RYK,IGF1R,PPIP5K2,COPS2,NCBP1,DHX38,TFCP2,XPO4,STAT3,PRMT5,SRP54,BRD2,RCOR1,AFF4,PHF8,NAA15,BLZF1,ACVR1,ZCCHC2,SLC41A1,MAP3K3,BTRC,DNAJC13,TMEM131,DYRK2,B3GALNT2,NUP98,KIAA0586,NBPF15,USP24,ATP11A,ARHGEF18,RANBP6,PSMD5,CHD9,HMGXB4,UBE2G1,SOS1,SLC12A6,ZEB1,WAC,MOSPD2,BCL10,TAF2,CAST,STAG1,PDCD10,RALGAPA2,RUSF1,PAFAH1B1,C2orf49,CELF1,CTDSP2,MARCHF8,SDAD1,FNBP1L,TAF5L,ITSN1,PCNX4,LCA5,TET2,ZC3H7A,EOGT,RBMX,DNAJC16,VPS41,UBR1,CMTM6,NOP9,CHD8,TAOK3,RASA2,CSGALNACT2,PRDM2,SPRED1,CUL4A,NAA30,UBE4A,SGTB,ENTPD4,VGLL4,ATP10D,MARF1,SPRED2,KDM5B,FGFR1OP2,AFDN,FOXJ2,HEG1,UBE2D3,VEZF1,DOCK7,LRCH4,CLIP1,RFFL,NOL6,RAD50,RSPRY1,LACTB,PTPRB,UBE3B,RC3H2,GFM1,CCSER2,MTMR10,PARD3B,PRKAR2A,RAB11FIP1,BAG5,NUP54,KPNA4,UBA2,RBM43,TGFBRAP1,RREB1,UHRF1BP1,WNK1,NONO,RP2,MBNL2,SP1,EPS15,DTWD2,GFM2,AQR,GALC,REST,PLS1,THRAP3,LARS2,JOSD1,DPY19L1,MECP2,OSMR,CASP7,ABHD16A,SNX18,ITFG1,UFM1,CCDC186,ATP2B1,ZNFX1,TANK,LRRC8B,TNS3,TUBA1B,STAU1,VPS26C,LRRFIP1,RRP1B,ZMYND11,RALGAPB,CCNG2,PSEN1,INTS6,CDK19,APC,PTPN11,MCM3AP,AGO4,AP1G1,ZNF17,ZNHIT6,NR2C2,FBXO28,AP1AR,MBLAC2,CSDE1,OSBP,CDYL,PGAM1,SOCS6,STAM,CDC42SE2,ZNF720,CIPC,GSTCD,STK24,GPATCH11,MOB1A,ZFP91,ARFGEF2,SCARB2,TFAM,KIF13B,SEPTIN8,KBTBD4,CDC40,RASA1,PUM2,MBTPS1,NEMP1,PHC3,ANKRD12,OPA1,RNF168,CDC42,GOLGA4,EPB41L2,TNPO1,NEK7,SEC22C,CYB5R4,GNG12,SEC31A,MAP3K4,TOP1,BCOR,RAD17,SYNRG,TCP11L2,TPP2,EIF2AK4,SEC24C,POGZ,EPC1,TMED10
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000272172ENST00000607376exon_skip_356108chr20:34740362-34743341-32.80-0.1498NCOA6ENST00000359003,ENST00000374796In-frame
ENSG00000272172ENST00000607376exon_skip_5818chr1:45568484-45568684-22.97-0.1203AKR1A1ENST00000351829,ENST00000372070Frame-shift
ENSG00000272172ENST00000607376exon_skip_145647chr16:69121052-69121170-12.83-0.1688CHTF8ENST00000398235,ENST00000448552Frame-shift
ENSG00000272172ENST00000607376exon_skip_291980chr17:59119318-59119495-15.23-0.1437SKA2ENST00000330137In-frame
ENSG00000272172ENST00000607376exon_skip_3490chr1:28742402-28743986-22.87-0.1079YTHDF2ENST00000373812,ENST00000542507In-frame
ENSG00000272172ENST00000607376exon_skip_95500chr12:96003837-96003920-7.86-0.1355LTA4HENST00000228740Frame-shift
ENSG00000272172ENST00000607376exon_skip_97655chr12:120579773-120579923-11.13-0.1040POP5ENST00000357500In-frame
ENSG00000272172ENST00000607376exon_skip_152672chr17:42540949-42541206-23.62-0.1270NAGLUENST00000225927Frame-shift
ENSG00000272172ENST00000607376exon_skip_430434chr4:82356536-82356683-10.30-0.1338HNRNPDENST00000313899In-frame
ENSG00000272172ENST00000607376exon_skip_445390chr5:150403120-150403312-21.43-0.1204CD74ENST00000009530In-frame
ENSG00000272172ENST00000607376exon_skip_453169chr6:75702644-75703072-15.58-0.1005SENP6ENST00000447266Frame-shift
ENSG00000272172ENST00000607376exon_skip_300022chr18:79919183-79919400-24.67-0.1272PQLC1ENST00000397778Frame-shift
ENSG00000272172ENST00000607376exon_skip_358606chr20:63202286-63203807-34.85-0.1947YTHDF1ENST00000370339In-frame
ENSG00000272172ENST00000607376exon_skip_143728chr16:29993905-29994843-21.29-0.1049HIRIP3ENST00000279392Frame-shift
ENSG00000272172ENST00000607376exon_skip_120741chr15:34228428-34228589-14.38-0.1073EMC4ENST00000267750Frame-shift
ENSG00000272172ENST00000607376exon_skip_52895chr10:98431130-98431291-20.47-0.1312HPS1ENST00000325103,ENST00000361490Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

Top

Variants for RP13-582O9.7

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000272172ENST00000607376BCKDHBENSG00000083123ENST00000369760-0.1562189-LIHC
ENSG00000272172ENST00000607376BCKDHBENSG00000083123ENST00000320393-0.12301-LIHC
ENSG00000272172ENST00000607376LPIN2ENSG00000101577ENST00000261596-0.13831-LUSC,LIHC
ENSG00000272172ENST00000607376GNPNAT1ENSG00000100522ENST00000554230-0.218026-LIHC
ENSG00000272172ENST00000607376HPS5ENSG00000110756ENST00000396253-0.11731-LUAD,LIHC
ENSG00000272172ENST00000607376HPS5ENSG00000110756ENST00000349215-0.11731-LUAD,LIHC
ENSG00000272172ENST00000607376HPS5ENSG00000110756ENST00000438420-0.11731-LUAD,LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000371514-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000478631-0.12381-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000528311-0.126570-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000371509-0.11243-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000407246-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000430330-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000408941-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000478274-0.11301-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000484100-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000533119-0.11241-LIHC
ENSG00000272172ENST00000607376SCP2ENSG00000116171ENST00000435345-0.11241-LIHC
ENSG00000272172ENST00000607376USP38ENSG00000170185ENST00000511739-0.11801-LIHC
ENSG00000272172ENST00000607376MYD88ENSG00000172936ENST00000396334-0.11311-LIHC
ENSG00000272172ENST00000607376MYD88ENSG00000172936ENST00000417037-0.11311-LIHC
ENSG00000272172ENST00000607376MYD88ENSG00000172936ENST00000421516-0.11311-LIHC
ENSG00000272172ENST00000607376PROS1ENSG00000184500ENST00000394236-0.10401-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376PROS1ENSG00000184500ENST00000407433-0.10401-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376CD302ENSG00000241399ENST00000429078-0.11181-LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376CD302ENSG00000241399ENST00000553424-0.11181-LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376CD302ENSG00000241399ENST00000259053-0.11181-LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000437932-0.13671-BLCA,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000615540-0.13671-BLCA,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000317968-0.13671-BLCA,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000627587-0.11621-BLCA,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000542407-0.13671-BLCA,LIHC
ENSG00000272172ENST00000607376PDLIM5ENSG00000163110ENST00000514743-0.13671-BLCA,LIHC
ENSG00000272172ENST00000607376SOCS6ENSG00000170677ENST00000582322-0.10431-LIHC
ENSG00000272172ENST00000607376CLIP1ENSG00000130779ENST00000540338-0.199786-BLCA
ENSG00000272172ENST00000607376CLIP1ENSG00000130779ENST00000541108-0.11531-BLCA
ENSG00000272172ENST00000607376CTBSENSG00000117151ENST00000370630-0.10231-LIHC
ENSG00000272172ENST00000607376CTBSENSG00000117151ENST00000465118-0.10311-LIHC
ENSG00000272172ENST00000607376CTBSENSG00000117151ENST00000370625-0.10311-LIHC
ENSG00000272172ENST00000607376MIDEASENSG00000156030ENST00000394071-0.16081-BLCA,LIHC
ENSG00000272172ENST00000607376MIDEASENSG00000156030ENST00000286523-0.16081-BLCA,LIHC
ENSG00000272172ENST00000607376MIDEASENSG00000156030ENST00000423556-0.2054120-BLCA,LIHC
ENSG00000272172ENST00000607376MIDEASENSG00000156030ENST00000451078-0.14701-BLCA,LIHC
ENSG00000272172ENST00000607376ARL5BENSG00000165997ENST00000377275-0.12061-LIHC
ENSG00000272172ENST00000607376LRCH1ENSG00000136141ENST00000311191-0.10041-BLCA,LUSC
ENSG00000272172ENST00000607376LRCH1ENSG00000136141ENST00000389798-0.10711-BLCA,LUSC
ENSG00000272172ENST00000607376LRCH1ENSG00000136141ENST00000389797-0.10711-BLCA,LUSC
ENSG00000272172ENST00000607376PLSCR4ENSG00000114698ENST00000354952-0.11711-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376PLSCR4ENSG00000114698ENST00000383083-0.11711-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376PLSCR4ENSG00000114698ENST00000433593-0.11711-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376PLSCR4ENSG00000114698ENST00000493382-0.317763-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376DLC1ENSG00000164741ENST00000316609-0.295471-BLCA,LUSC,BRCA,LUAD,LIHC
ENSG00000272172ENST00000607376CMTM6ENSG00000091317ENST00000205636-0.10841-LIHC
ENSG00000272172ENST00000607376ZFP36L1ENSG00000185650ENST00000555997-0.13631-BLCA,LIHC
ENSG00000272172ENST00000607376ZFP36L1ENSG00000185650ENST00000439696-0.13591-BLCA,LIHC
ENSG00000272172ENST00000607376ZFP36L1ENSG00000185650ENST00000336440-0.10191-BLCA,LIHC
ENSG00000272172ENST00000607376TSPYL1ENSG00000189241ENST00000368608-0.12561-BLCA
ENSG00000272172ENST00000607376SEC24BENSG00000138802ENST00000504968-0.1355127-LIHC
ENSG00000272172ENST00000607376SEC24BENSG00000138802ENST00000399100-0.4020143-LIHC
ENSG00000272172ENST00000607376SEC24BENSG00000138802ENST00000265175-0.12051-LIHC

Top

lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

Top

lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000272172.1ENST00000607376.166455255