lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | IDH3A,DIP2B,NEK4,METTL14,SCAPER,KRAS,UTP20,TBC1D5,AIDA,TCF20,KLHL18,TMEM161B,TRIP11,CCNT1,SLC17A5,USP53,LDB1,ZFYVE26,MAN1A2,FGD4,PRPF4B,CSNK1G1,TRIM5,CELF2,SIN3A,ATP11B,RAB8B,PDPK1,CEP120,CALD1,NMD3,DENND2B,SP100,PTPRE,PHF20,TMCC3,REPS1,RAP1A,CLASP2,SNIP1,CNOT7,CDC42BPA,TLN1,ITSN2,NUP133,ABHD2,FAM102B,SEC22B,RIN2,TBCEL,GTF3C3,PELI1,RNF145,SLC38A2,AZI2,FBXW2,IFNAR1,ALMS1,ABL2,SEC23B,KBTBD2,GTF2I,NUP58,TGOLN2,STX7,NIN,KIF1B,SPATA13,EPC2,SLC25A40,ERAP1,DDX42,REV3L,ATP6V0A2,EIF2AK2,ARHGAP32,CTDSPL2,RPRD1A,ARHGAP31,ZMAT3,CD302,SPOPL,POLG,FAM168B,HIF1AN,FOXO1,RIF1,SINHCAF,EPB41L4A,KLHL28,FRS2,DUSP16,SCP2,WDR82,EDC4,SP2,RCHY1,RNF214,SPTY2D1,DCTN4,DLC1,GPATCH2L,RABL3,KCTD10,KMT2D,BAZ1B,TRAPPC8,KCTD18,RSBN1,RNF111,CTTNBP2NL,GMCL1,IFNAR2,EDEM3,VPS13D,FBXL17,TRPM7,LUZP1,TBCCD1,SMURF2,RSF1,SNAPC3,KMT2C,FBXL4,PIKFYVE,RAB3GAP2,THUMPD1,SLC35A5,VPS50,GSPT1,UBTD2,TFDP1,NFKB1,EPG5,MBD5,BMPR2,PDCD6IP,ME2,KIAA1671,GTF2A1,TFIP11,MPHOSPH8,RNF41,SMAD5,ABI2,AKIRIN1,VWA8,GCC2,TEX2,UTP25,F2R,ELK4,WDR3,FEM1B,URB2,ZFYVE9,EMC1,SCAF11,CNOT1,DIABLO,SLU7,SLC35E1,TSTD2,MAP3K1,USP15,CDC14B,TOX4,BAZ2B,DCUN1D1,KIF16B,ARID2,COBLL1,ATF7,KATNAL1,APPL1,CHIC1,MACF1,SH3GLB1,LIMA1,MBNL3,ATP2C1,C5orf24,CCNY,ILK,HAUS6,FARP2,EIF4EBP2,BRAF,DYNC1I2,RPAP3,ARHGEF6,VHL,GARRE1,BCKDHA,SAP130,STK38L,MAPK1,RNF169,ITPRID2,MIER3,USP9X,MAST4,SATB1,MTO1,TNS1,ETS1,SSH1,KLHL5,RBM33,RNF44,SMCHD1,IRF2,KMT2A,ZYG11B,AP3M1,LAMP2,KIF2A,ARHGAP29,POLK,CCDC91,DCAF17,AASDHPPT,PICALM,GOLPH3,NRAS,FAM114A2,USP14,CKAP5,HDHD2,FAM172A,PROS1,USP38,CREB1,PLEKHG1,DENND4C,OXSR1,SENP2,SBNO1,HIPK1,QRICH1,LIMS1,TMEM245,TRAPPC10,LATS2,PI4KA,WDR36,DENND1B,THAP12,SOCS4,SLC9A6,BNIP2,DDX46,CLTC,HCFC2,CREBRF,ARID4B,NCOA1,SON,PIK3C3,TOR1AIP1,BIRC2,PTPRG,PTPN12,ASCC1,BBX,TAF1,CRTC3,VIRMA,SEPTIN7,SGCB,ZMIZ1,TMEM181,KDM1B,SF3B1,DDX24,MIDEAS,RBAK,DNAJC3,RSU1,GCC1,MED13L,SEPTIN2,ADAM9,SKAP2,IGF2R,ITGA6,PDCL,ABCA1,MINDY2,SYNJ2BP,SPAG9,PPP4R1,ARRDC3,HPS5,YTHDC1,PIK3C2A,BIRC6,PPM1A,SWT1,ARL2BP,ATRX,WWC2,MIA3,CERS6,AHNAK,NSD1,DDX52,CNOT4,AHCYL1,KDM4A,MYO9A,EVI5,RNF123,PTPRK,BECN1,MAP4K3,RDX,CAMSAP1,SMCR8,QSER1,MTUS1,NEDD1,PBRM1,SRRM2,SCRN1,ZSWIM8,TESK2,VPS13B,APBB2,PARVA,SNX9,MLLT10,PRRC2C,PHF3,LONP2,MAFG,STRN,SLFN5,GOLIM4,TTC3,KIDINS220,PTBP3,CDC27,SELENOP,TMCO3,FBXO11,GIT2,SAP30L,FBXL14,MKRN2,PHAX,TANGO6,UBE4B,TP53BP2,NDST1,ATR,POM121,BRPF3,TAB2,POC1B,EIF3A,TMCC1,MARCHF7,OSBPL8,GNAQ,OPN3,RLIM,DCAF7,NXT2,CHERP,PPP4R3B,FASTKD2,PCGF5,EIF4G2,CD46,CDC23,SHE,GOLGB1,BACH1,GOLM2,KMT2E,TLK1,ARFGEF1,NOTCH2,ITCH,ARCN1,FYCO1,SRPK1,WAPL,TRAF6,TMEM87B,USP4,CCDC50,WDR11,HACD3,USF3,MBNL1,NPEPPS,BMP2K,LYST,BZW1,HECTD1,PKN2,GTF2H1,TASOR,ARIH1,PUM1,FNDC3A,SEC24B,FOXN2,ACSL3,CTNNB1,FUBP1,SERPINB8,SP4,PKD2,EXOC6B,N4BP1,FBXO21,TP53BP1,VPS37A,G3BP1,GIGYF2,RASSF8,USP34,ERMAP,RPS6KA3,EGLN1,CCNI,CRIM1,ASXL2,USP47,POLR2B,UBE2V1,FRYL,GXYLT1,CEP350,LMBR1,HIPK2,HSPG2,ASH1L,LCOR,RAB18,SLC10A7,GNPTAB,MED13,WDR7,GALK2,SMG6,RAB22A,LTN1,PRPF40A,SKI,CFH,BTN2A1,CDK12,RICTOR,PRKAA1,MEF2A,MYO18A,TUBGCP3,GOSR1,AKAP13,ELF1,VRK2,EIF5,STAM2,PLAA,EPAS1,TRIM33,PIP5K1A,CANX,DOCK1,NEMF,CCNK,NF1,DSTYK,MAML1,CBL,LPIN2,DCAF12,ERLIN1,HMGCS1,UBE2K,FCF1,RTL6,NEDD4,TBK1,CD93,FAM214A,KAT6A,AMMECR1L,PCDHGC3,PIP4K2C,ERBIN,CDV3,CAP1,XRCC5,RIC1,FOXO3,AGPS,MFSD6,FBXO38,IREB2,NSUN3,SART3,FAM219B,ATF2,NCOA2,SNAP23,PRR14L,ROCK1,CHMP3,CNIH1,FAM168A,METAP1,TBC1D2B,LARP4,PARP11,ARL13B,YWHAG,MFSD1,EXOC6,CPEB2,COG5,CHURC1,OSBPL9,MTF1,LMBRD2,LRRC8C,PPARA,RABGAP1,SNX2,PPIG,TVP23B,EIF2S3,EIF3L,ATE1,EMSY,SEC62,G2E3,TMOD3,IDS,BRF2,DYRK1A,MRTFB,USP8,STK4,INPP4A,DCAF1,GNPNAT1,CEP170,KDM3B,MAPK1IP1L,NT5C2,UBQLN1,QTRT2,PIK3CB,TACC1,SNX6,CEP104,SLC30A9,TRIM37,ZMYM5,SMAD4,NCOA7,TET3,PLEKHB2,SPAST,POLR2A,ANKFY1,FGD6,ATRN,CTNND1,PARG,ATP2A2,UHRF2,ANKRD50,RIC8B,M6PR,BICRAL,SNX29,APAF1,GBF1,PCNX1,UBR4,CDC42SE1,SLMAP,STYX,CLCN3,SESTD1,UBR2,FBXW11,ZMYM4,ARMCX3,WDFY3,CLCC1,SDE2,INO80,FTO,LRRC58,VPS36,FAN1,DNAJC21,ATP6V1A,NIPA2,DYNC1LI2,CERT1,ANKRD40,SENP6,KDM6A,SNX1,COG6,BCL9L,KLHDC2,SERINC3,DOCK9,PDZD8,SENP1,SPTLC1,RO60,CACUL1,MAPK9,TMEM30A,DENND5A,CDC42BPB,PIK3CG,TNFAIP3,PIAS3,AFAP1,MCFD2,YTHDC2,TCP1,PDE5A,ARID1A,MARCHF6,TRANK1,ESYT2,RFC1,DSE,NBN,GNL3L,LRBA,POLR1B,EAF1,MFSD14B,STRN3,RASAL2,KAT6B,FCHO2,MFN1,PCYOX1,PEAK1,NECAP1,SNX19,PHKB,SLK,PAK2,ZEB2,CPEB4,PRRC1,COPA,LRP10,CYLD,AP4E1,GNB1,BTBD10,APPBP2,EIF2AK3,SEC23A,MKLN1,PSD3,TIMM23B,SMAD1,SMC2,LNPEP,POGK,MYCBP2,AGFG1,LPCAT3,SNRNP200,SPPL2A,VPS35,COMMD2,SEC63,VTA1,ERCC6L2,ZSWIM6,KAT7,TMEM123,DCP1A,KLF11,TBC1D9,CNOT6L,HBP1,PDE12,ALS2,SETX,SUDS3,HUWE1,KIF3A,ATAD1,TEP1,YME1L1,SPTBN1,FAM13B,ICE2,LSM11,DPP8,ATF1,LATS1,MYD88,TRIM68,RBMS2,CENPC,PPP1R15B,LRCH1,FAM53C,ZRANB1,EEF1A1,TRAPPC11,NUP160,FCHSD2,PIGK,CTBS,UBXN7,CHSY1,RC3H1,TOGARAM1,TUT4,SMG7,MSH3,MAN2A2,HELZ,BTBD9,STARD4,MCL1,TGFBR2,ZFP1,ZDHHC20,USP33,ANKRD27,USP16,MAPK14,TUBGCP4,USP32,TTLL5,WBP11,ELP1,ITPR3,AGO1,DOP1B,PIAS1,SLC25A24,DNMT1,UBE3C,DDX3X,BAZ2A,YIPF6,MYOF,MALT1,EIF3C,NFX1,GAPVD1,DENND4A,RAP1B,USP46,SPRING1,KIAA0232,CCNT2,ANKRD13A,DNAJC24,MSN,TRIP12,MTOR,DIAPH1,KPNA1,CSNK1A1,NDFIP2,TTC37,PPP3CB,CLINT1,CHD6,SLC25A30,DNAJC9,RYBP,MED21,THOC2,PPM1B,HAUS2,TMX3,NCOR1,MTPN,MITF,PGM2,RBBP4,TRRAP,NUP155,AREL1,LNX2,ATXN1L,STX17,SECISBP2L,SEPTIN10,ACTR3,RAB3GAP1,MED14,MEF2D,ADAM10,VPS26A,RAB5A,MAP3K2,DNAJC14,PHACTR2,METTL4,ITPRIPL2,ZC3H11A,FKTN,WASF2,KTN1,MEX3C,GPR107,SGMS1,CCPG1,ANXA7,YIPF5,SEPTIN11,KIF13A,ARNT,RAI1,RSRC2,XPO1,USP42,ARHGEF12,ZBTB6,URB1,ROCK2,ZBED6,HACD4,UEVLD,MTMR1,CEP97,SEC23IP,RBM41,TMLHE,WDR26,CCNYL1,SIKE1,APOOL,MGAT4A,SOS2,SLC30A5,C6orf62,BACE1,TMTC2,GDAP2,IL6ST,AFF1,ARL5B,CHM,FYTTD1,VAMP3,ERCC4,HECTD4,IPO7,MAGT1,SETD2,RNF141,KDM3A,SPG11,GLYR1,VPS13C,IBTK,ENPP4,FER,SMC5,GSK3B,PDSS2,EXOC5,AEBP2,BOD1L1,RNF4,YLPM1,KPNA6,RNF40,EPB41,MTR,MYO5A,HBS1L,CLOCK,CCDC93,MTREX,EXOC2,CNTRL,SCRN3,RBM18,TM2D1,CIC,SMIM14,LZIC,CCDC47,BTBD7,ZW10,IQGAP1,SMARCA2,EEA1,CMTR2,KLF7,ARHGAP5,ATXN7,MPDZ,PPP1CB,CFAP97,UBN1,NUP205,COPB2,RBBP5,RAD23B,SEC14L1,SETD5,TEAD1,PCM1,PDLIM5,VEZT,ZBTB5,DDX50,SH3RF1,SWAP70,C5orf51,PPTC7,ABHD5,TSPYL1,FAM120B,NCOA3,SYNJ1,SBF2,ATP9B,ERC1,C16orf72,PAIP2,RHOT1,YES1,CSNK1G3,HEATR5B,LEPROT,TBC1D9B,FAM20B,DCP2,ZNF28,ANO6,TMEM184C,ARL5A,PPFIA1,CDC14A,RALB,SLC30A7,ITGA2,MED17,TAB3,SPICE1,PREPL,RAB11FIP5,RPRD2,HEATR1,ZFX,AP5M1,KIAA1143,HCFC1,UHMK1,KIAA2026,ENTPD7,SMARCC2,TTC5,PPP1R12A,KIAA1109,TBC1D15,C20orf194,USP6NL,EFCAB14,SMG1,CREBBP,LGALS8,HINT3,ABLIM1,SRP72,POLH,STAG2,ELOA,KDM7A,TRAK2,ARID1B,TMEM33,SH3BP5,ABRAXAS1,GTF2H3,TENT2,MAT2A,SMARCC1,RNF31,BRD3,GANAB,JKAMP,SLTM,RAB35,RB1CC1,KLF13,GPD2,PIK3CA,SGPL1,XIAP,RFWD3,IPO8,SLC35A3,YAP1,CAND1,RPA1,MYSM1,SAMD8,PPP2R5E,FOXN3,UVRAG,RALBP1,NCOA4,FBH1,MTRR,FAM126B,ACTR2,VAMP7,PLSCR4,GPATCH8,CNOT8,ATMIN,TRAM2,TUT7,MED1,RAB14,OGA,CLASP1,CUL2,GON4L,SMG8,CAB39,ZFP36L1,MIS18BP1,MBOAT1,KCTD20,SLC12A2,PTAR1,RABEP1,FNDC3B,BCKDHB,ATP7A,HERC1,DOP1A,NOMO2,RAPGEF1,TBC1D14,ADAM17,PHF6,ATG2B,SLC30A6,SH2B3,WDR47,SUSD6,JMY,VPS4B,NEPRO,FAM104A,FOXJ3,ZNF41,LARP1,CILK1,SLAIN2,ZNF24,LAMC1,GPR180,ACAP2,BCL9,EXOC7,ANAPC1,MON2,ETV3,RYK,IGF1R,PPIP5K2,COPS2,NCBP1,DHX38,TFCP2,XPO4,STAT3,PRMT5,SRP54,BRD2,RCOR1,AFF4,PHF8,NAA15,BLZF1,ACVR1,ZCCHC2,SLC41A1,MAP3K3,BTRC,DNAJC13,TMEM131,DYRK2,B3GALNT2,NUP98,KIAA0586,NBPF15,USP24,ATP11A,ARHGEF18,RANBP6,PSMD5,CHD9,HMGXB4,UBE2G1,SOS1,SLC12A6,ZEB1,WAC,MOSPD2,BCL10,TAF2,CAST,STAG1,PDCD10,RALGAPA2,RUSF1,PAFAH1B1,C2orf49,CELF1,CTDSP2,MARCHF8,SDAD1,FNBP1L,TAF5L,ITSN1,PCNX4,LCA5,TET2,ZC3H7A,EOGT,RBMX,DNAJC16,VPS41,UBR1,CMTM6,NOP9,CHD8,TAOK3,RASA2,CSGALNACT2,PRDM2,SPRED1,CUL4A,NAA30,UBE4A,SGTB,ENTPD4,VGLL4,ATP10D,MARF1,SPRED2,KDM5B,FGFR1OP2,AFDN,FOXJ2,HEG1,UBE2D3,VEZF1,DOCK7,LRCH4,CLIP1,RFFL,NOL6,RAD50,RSPRY1,LACTB,PTPRB,UBE3B,RC3H2,GFM1,CCSER2,MTMR10,PARD3B,PRKAR2A,RAB11FIP1,BAG5,NUP54,KPNA4,UBA2,RBM43,TGFBRAP1,RREB1,UHRF1BP1,WNK1,NONO,RP2,MBNL2,SP1,EPS15,DTWD2,GFM2,AQR,GALC,REST,PLS1,THRAP3,LARS2,JOSD1,DPY19L1,MECP2,OSMR,CASP7,ABHD16A,SNX18,ITFG1,UFM1,CCDC186,ATP2B1,ZNFX1,TANK,LRRC8B,TNS3,TUBA1B,STAU1,VPS26C,LRRFIP1,RRP1B,ZMYND11,RALGAPB,CCNG2,PSEN1,INTS6,CDK19,APC,PTPN11,MCM3AP,AGO4,AP1G1,ZNF17,ZNHIT6,NR2C2,FBXO28,AP1AR,MBLAC2,CSDE1,OSBP,CDYL,PGAM1,SOCS6,STAM,CDC42SE2,ZNF720,CIPC,GSTCD,STK24,GPATCH11,MOB1A,ZFP91,ARFGEF2,SCARB2,TFAM,KIF13B,SEPTIN8,KBTBD4,CDC40,RASA1,PUM2,MBTPS1,NEMP1,PHC3,ANKRD12,OPA1,RNF168,CDC42,GOLGA4,EPB41L2,TNPO1,NEK7,SEC22C,CYB5R4,GNG12,SEC31A,MAP3K4,TOP1,BCOR,RAD17,SYNRG,TCP11L2,TPP2,EIF2AK4,SEC24C,POGZ,EPC1,TMED10 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000272172 | ENST00000607376 | exon_skip_356108 | chr20:34740362-34743341 | -32.80 | -0.1498 | NCOA6 | ENST00000359003,ENST00000374796 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_5818 | chr1:45568484-45568684 | -22.97 | -0.1203 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_145647 | chr16:69121052-69121170 | -12.83 | -0.1688 | CHTF8 | ENST00000398235,ENST00000448552 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_291980 | chr17:59119318-59119495 | -15.23 | -0.1437 | SKA2 | ENST00000330137 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_3490 | chr1:28742402-28743986 | -22.87 | -0.1079 | YTHDF2 | ENST00000373812,ENST00000542507 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_95500 | chr12:96003837-96003920 | -7.86 | -0.1355 | LTA4H | ENST00000228740 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_97655 | chr12:120579773-120579923 | -11.13 | -0.1040 | POP5 | ENST00000357500 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_152672 | chr17:42540949-42541206 | -23.62 | -0.1270 | NAGLU | ENST00000225927 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_430434 | chr4:82356536-82356683 | -10.30 | -0.1338 | HNRNPD | ENST00000313899 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_445390 | chr5:150403120-150403312 | -21.43 | -0.1204 | CD74 | ENST00000009530 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_453169 | chr6:75702644-75703072 | -15.58 | -0.1005 | SENP6 | ENST00000447266 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_300022 | chr18:79919183-79919400 | -24.67 | -0.1272 | PQLC1 | ENST00000397778 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_358606 | chr20:63202286-63203807 | -34.85 | -0.1947 | YTHDF1 | ENST00000370339 | In-frame | ENSG00000272172 | ENST00000607376 | exon_skip_143728 | chr16:29993905-29994843 | -21.29 | -0.1049 | HIRIP3 | ENST00000279392 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_120741 | chr15:34228428-34228589 | -14.38 | -0.1073 | EMC4 | ENST00000267750 | Frame-shift | ENSG00000272172 | ENST00000607376 | exon_skip_52895 | chr10:98431130-98431291 | -20.47 | -0.1312 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000272172 | ENST00000607376 | BCKDHB | ENSG00000083123 | ENST00000369760 | -0.1562 | 189 | - | LIHC | ENSG00000272172 | ENST00000607376 | BCKDHB | ENSG00000083123 | ENST00000320393 | -0.1230 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | LPIN2 | ENSG00000101577 | ENST00000261596 | -0.1383 | 1 | - | LUSC,LIHC | ENSG00000272172 | ENST00000607376 | GNPNAT1 | ENSG00000100522 | ENST00000554230 | -0.2180 | 26 | - | LIHC | ENSG00000272172 | ENST00000607376 | HPS5 | ENSG00000110756 | ENST00000396253 | -0.1173 | 1 | - | LUAD,LIHC | ENSG00000272172 | ENST00000607376 | HPS5 | ENSG00000110756 | ENST00000349215 | -0.1173 | 1 | - | LUAD,LIHC | ENSG00000272172 | ENST00000607376 | HPS5 | ENSG00000110756 | ENST00000438420 | -0.1173 | 1 | - | LUAD,LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000371514 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000478631 | -0.1238 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000528311 | -0.1265 | 70 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000371509 | -0.1124 | 3 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000407246 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000430330 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000408941 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000478274 | -0.1130 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000484100 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000533119 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | SCP2 | ENSG00000116171 | ENST00000435345 | -0.1124 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | USP38 | ENSG00000170185 | ENST00000511739 | -0.1180 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | MYD88 | ENSG00000172936 | ENST00000396334 | -0.1131 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | MYD88 | ENSG00000172936 | ENST00000417037 | -0.1131 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | MYD88 | ENSG00000172936 | ENST00000421516 | -0.1131 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | PROS1 | ENSG00000184500 | ENST00000394236 | -0.1040 | 1 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | PROS1 | ENSG00000184500 | ENST00000407433 | -0.1040 | 1 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | CD302 | ENSG00000241399 | ENST00000429078 | -0.1118 | 1 | - | LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | CD302 | ENSG00000241399 | ENST00000553424 | -0.1118 | 1 | - | LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | CD302 | ENSG00000241399 | ENST00000259053 | -0.1118 | 1 | - | LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000437932 | -0.1367 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000615540 | -0.1367 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000317968 | -0.1367 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000627587 | -0.1162 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000542407 | -0.1367 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | PDLIM5 | ENSG00000163110 | ENST00000514743 | -0.1367 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | SOCS6 | ENSG00000170677 | ENST00000582322 | -0.1043 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.1997 | 86 | - | BLCA | ENSG00000272172 | ENST00000607376 | CLIP1 | ENSG00000130779 | ENST00000541108 | -0.1153 | 1 | - | BLCA | ENSG00000272172 | ENST00000607376 | CTBS | ENSG00000117151 | ENST00000370630 | -0.1023 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | CTBS | ENSG00000117151 | ENST00000465118 | -0.1031 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | CTBS | ENSG00000117151 | ENST00000370625 | -0.1031 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | MIDEAS | ENSG00000156030 | ENST00000394071 | -0.1608 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | MIDEAS | ENSG00000156030 | ENST00000286523 | -0.1608 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | MIDEAS | ENSG00000156030 | ENST00000423556 | -0.2054 | 120 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | MIDEAS | ENSG00000156030 | ENST00000451078 | -0.1470 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | ARL5B | ENSG00000165997 | ENST00000377275 | -0.1206 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | LRCH1 | ENSG00000136141 | ENST00000311191 | -0.1004 | 1 | - | BLCA,LUSC | ENSG00000272172 | ENST00000607376 | LRCH1 | ENSG00000136141 | ENST00000389798 | -0.1071 | 1 | - | BLCA,LUSC | ENSG00000272172 | ENST00000607376 | LRCH1 | ENSG00000136141 | ENST00000389797 | -0.1071 | 1 | - | BLCA,LUSC | ENSG00000272172 | ENST00000607376 | PLSCR4 | ENSG00000114698 | ENST00000354952 | -0.1171 | 1 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | PLSCR4 | ENSG00000114698 | ENST00000383083 | -0.1171 | 1 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | PLSCR4 | ENSG00000114698 | ENST00000433593 | -0.1171 | 1 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.3177 | 63 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | DLC1 | ENSG00000164741 | ENST00000316609 | -0.2954 | 71 | - | BLCA,LUSC,BRCA,LUAD,LIHC | ENSG00000272172 | ENST00000607376 | CMTM6 | ENSG00000091317 | ENST00000205636 | -0.1084 | 1 | - | LIHC | ENSG00000272172 | ENST00000607376 | ZFP36L1 | ENSG00000185650 | ENST00000555997 | -0.1363 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | ZFP36L1 | ENSG00000185650 | ENST00000439696 | -0.1359 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | ZFP36L1 | ENSG00000185650 | ENST00000336440 | -0.1019 | 1 | - | BLCA,LIHC | ENSG00000272172 | ENST00000607376 | TSPYL1 | ENSG00000189241 | ENST00000368608 | -0.1256 | 1 | - | BLCA | ENSG00000272172 | ENST00000607376 | SEC24B | ENSG00000138802 | ENST00000504968 | -0.1355 | 127 | - | LIHC | ENSG00000272172 | ENST00000607376 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.4020 | 143 | - | LIHC | ENSG00000272172 | ENST00000607376 | SEC24B | ENSG00000138802 | ENST00000265175 | -0.1205 | 1 | - | LIHC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272172.1 | ENST00000607376.1 | 66 | 455 | 255 |
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