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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000272143

Summary for FGF14-AS2

check button Gene summary

Gene informationEnsembl ID

ENSG00000272143

Gene symbol

FGF14-AS2

Gene nameFGF14 antisense RNA 2
HGNC

44368

Entrez ID

283481

Gene typelincRNA
SynonymsFGF14-AS2|13q33.1
UniProtAcc

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Structure and expression level for FGF14-AS2

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002721438.788519e+01-2.158816e+002.756671e-01-7.831243e+004.830000e-151.210000e-13DOWNCHOL
ENSG000002721432.017048e+02-1.216123e+001.013748e-01-1.199631e+013.720000e-334.410000e-32DOWNKIRC
ENSG000002721432.207919e+02-2.823253e+002.664330e-01-1.059649e+013.090000e-268.700000e-25DOWNKICH
ENSG000002721434.875446e+01-1.187444e+003.755555e-01-3.161834e+001.567790e-035.600800e-03DOWNBLCA
ENSG000002721433.201709e+01-1.950501e+003.211356e-01-6.073762e+001.250000e-097.560000e-09DOWNUCEC
ENSG000002721437.946888e+01-1.409289e+001.643049e-01-8.577276e+009.710000e-181.840000e-16DOWNPRAD
ENSG000002721439.457688e+01-2.053487e+001.214387e-01-1.690967e+013.820000e-641.230000e-62DOWNBRCA
ENSG000002721436.146231e+01-1.579439e+001.571726e-01-1.004908e+019.270000e-241.230000e-22DOWNLUAD
ENSG000002721438.902702e+01-1.273281e+001.833483e-01-6.944599e+003.800000e-123.020000e-11DOWNLIHC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000272143-3.041691e-012.559601e-27BRCA9.009797e-25
ENSG00000272143-3.602523e-011.506211e-02CHOL1.686716e-02
ENSG00000272143-6.864525e-011.126090e-13KICH8.483072e-12
ENSG00000272143-4.120811e-012.527967e-26KIRC5.833770e-25
ENSG00000272143-3.233702e-019.912874e-16LUAD1.608589e-14
ENSG00000272143-3.638286e-011.093196e-18PRAD1.987996e-17
ENSG00000272143-3.038676e-011.482961e-13THCA1.403517e-12
ENSG00000272143-3.475192e-014.187963e-18UCEC1.060951e-16

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lncRNA-Protein interaction for FGF14-AS2

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for FGF14-AS2

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for FGF14-AS2

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000272143ENST00000606448exon_skip_368399chr22:29825621-29825780-25.83-0.2034ASCC2ENST00000307790,ENST00000397771In-frame
ENSG00000272143ENST00000606448exon_skip_481821chr8:22067084-22067159-12.80-0.4000DMTNENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266In-frame
ENSG00000272143ENST00000606448exon_skip_114200chr14:73279280-73279424-25.41-0.2153NUMBENST00000355058,ENST00000555238In-frame
ENSG00000272143ENST00000606448exon_skip_287763chr17:28884224-28884315-17.37-0.2020FLOT2ENST00000394908Frame-shift

check buttonlncRNA targets by miRNA.
lncRNA targets by miRNA
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source
ENSG00000272143hsa-mir-182ENST00000606448chr13:102395119-102395223202.00-91.1778NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102394758-102394881197.00-114.14126NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102395275-102395383193.00-86.0690NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102395481-102395597191.00-93.10114NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102394930-102395035178.00-94.93106NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102394631-102394745148.00-112.20113NA
ENSG00000272143hsa-mir-182ENST00000606448chr13:102395042-102395150144.00-84.0990NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102395138-102395248210.00-96.3089NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102394848-102394951189.00-107.46106NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102395294-102395404181.00-98.84114NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102395526-102395639175.00-82.30107NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102394631-102394726166.00-108.0791NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102395439-102395543166.00-86.2283NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102394697-102394809163.00-108.5884NA
ENSG00000272143hsa-mir-183ENST00000606448chr13:102395052-102395155149.00-80.68109NA
ENSG00000272143hsa-mir-96ENST00000606448chr13:102395539-102395628172.00-57.6987NA
ENSG00000272143hsa-mir-96ENST00000606448chr13:102395381-102395471161.00-62.5389NA
ENSG00000272143hsa-mir-96ENST00000606448chr13:102395032-102395101155.00-59.8273NA
ENSG00000272143hsa-mir-96ENST00000606448chr13:102394927-102395008146.00-73.2079NA
ENSG00000272143hsa-mir-96ENST00000606448chr13:102394664-102394736144.00-70.8374NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102394751-102394825160.00-67.9069NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102395445-102395510157.00-62.7368NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102394688-102394762150.00-76.8171NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102395348-102395415150.00-62.7267NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102394920-102394996143.00-78.3568NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102395547-102395613143.00-60.1169NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102394858-102394923140.00-63.4064NA
ENSG00000272143hsa-mir-21ENST00000606448chr13:102395099-102395175140.00-58.9070NA

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Variants for FGF14-AS2

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types
ENSG00000272143FGF14-AS2,hsa-mir-21,ACYP2CHOL,BRCA,THCA,PAAD,THYM
ENSG00000272143FGF14-AS2,hsa-mir-21,KLHL15CHOL,BRCA,THCA,PAAD,THYM
ENSG00000272143FGF14-AS2,hsa-mir-182,C1SUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,EPAS1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,ECM2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,ZCCHC24UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,LEPRUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,SERPING1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,COPZ2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,DPTUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,CPED1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,SERPINF1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,HLFUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-182,FERMT2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,FERMT2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,EPAS1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,COPZ2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,DPTUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,INMTUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,CPED1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,ECM2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,SERPINF1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,HLFUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,SERPING1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,C1SUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,C1RUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,LEPRUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,ZCCHC24UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-96,LDB2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,MPDZUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,DPTUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,ECM2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,SERPING1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,C1SUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,C1RUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,HLFUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,COPZ2UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,CPED1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,INMTUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,ZCCHC24UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,LEPRUCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,SERPINF1UCEC,KICH,CHOL,BRCA,PRAD
ENSG00000272143FGF14-AS2,hsa-mir-183,FERMT2UCEC,KICH,CHOL,BRCA,PRAD

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000272143.1ENST00000606448.15921839