lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000272143 | ENST00000606448 | exon_skip_368399 | chr22:29825621-29825780 | -25.83 | -0.2034 | ASCC2 | ENST00000307790,ENST00000397771 | In-frame | ENSG00000272143 | ENST00000606448 | exon_skip_481821 | chr8:22067084-22067159 | -12.80 | -0.4000 | DMTN | ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266 | In-frame | ENSG00000272143 | ENST00000606448 | exon_skip_114200 | chr14:73279280-73279424 | -25.41 | -0.2153 | NUMB | ENST00000355058,ENST00000555238 | In-frame | ENSG00000272143 | ENST00000606448 | exon_skip_287763 | chr17:28884224-28884315 | -17.37 | -0.2020 | FLOT2 | ENST00000394908 | Frame-shift |
lncRNA targets by miRNA. |
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LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102395119-102395223 | 202.00 | -91.17 | 78 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102394758-102394881 | 197.00 | -114.14 | 126 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102395275-102395383 | 193.00 | -86.06 | 90 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102395481-102395597 | 191.00 | -93.10 | 114 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102394930-102395035 | 178.00 | -94.93 | 106 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102394631-102394745 | 148.00 | -112.20 | 113 | NA | ENSG00000272143 | hsa-mir-182 | ENST00000606448 | chr13:102395042-102395150 | 144.00 | -84.09 | 90 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102395138-102395248 | 210.00 | -96.30 | 89 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102394848-102394951 | 189.00 | -107.46 | 106 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102395294-102395404 | 181.00 | -98.84 | 114 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102395526-102395639 | 175.00 | -82.30 | 107 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102394631-102394726 | 166.00 | -108.07 | 91 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102395439-102395543 | 166.00 | -86.22 | 83 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102394697-102394809 | 163.00 | -108.58 | 84 | NA | ENSG00000272143 | hsa-mir-183 | ENST00000606448 | chr13:102395052-102395155 | 149.00 | -80.68 | 109 | NA | ENSG00000272143 | hsa-mir-96 | ENST00000606448 | chr13:102395539-102395628 | 172.00 | -57.69 | 87 | NA | ENSG00000272143 | hsa-mir-96 | ENST00000606448 | chr13:102395381-102395471 | 161.00 | -62.53 | 89 | NA | ENSG00000272143 | hsa-mir-96 | ENST00000606448 | chr13:102395032-102395101 | 155.00 | -59.82 | 73 | NA | ENSG00000272143 | hsa-mir-96 | ENST00000606448 | chr13:102394927-102395008 | 146.00 | -73.20 | 79 | NA | ENSG00000272143 | hsa-mir-96 | ENST00000606448 | chr13:102394664-102394736 | 144.00 | -70.83 | 74 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102394751-102394825 | 160.00 | -67.90 | 69 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102395445-102395510 | 157.00 | -62.73 | 68 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102394688-102394762 | 150.00 | -76.81 | 71 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102395348-102395415 | 150.00 | -62.72 | 67 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102394920-102394996 | 143.00 | -78.35 | 68 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102395547-102395613 | 143.00 | -60.11 | 69 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102394858-102394923 | 140.00 | -63.40 | 64 | NA | ENSG00000272143 | hsa-mir-21 | ENST00000606448 | chr13:102395099-102395175 | 140.00 | -58.90 | 70 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000272143 | FGF14-AS2,hsa-mir-21,ACYP2 | CHOL,BRCA,THCA,PAAD,THYM | ENSG00000272143 | FGF14-AS2,hsa-mir-21,KLHL15 | CHOL,BRCA,THCA,PAAD,THYM | ENSG00000272143 | FGF14-AS2,hsa-mir-182,C1S | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,EPAS1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,ECM2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,ZCCHC24 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,LEPR | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,SERPING1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,COPZ2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,DPT | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,CPED1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,SERPINF1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,HLF | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-182,FERMT2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,FERMT2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,EPAS1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,COPZ2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,DPT | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,INMT | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,CPED1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,ECM2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,SERPINF1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,HLF | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,SERPING1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,C1S | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,C1R | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,LEPR | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,ZCCHC24 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-96,LDB2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,MPDZ | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,DPT | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,ECM2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,SERPING1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,C1S | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,C1R | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,HLF | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,COPZ2 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,CPED1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,INMT | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,ZCCHC24 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,LEPR | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,SERPINF1 | UCEC,KICH,CHOL,BRCA,PRAD | ENSG00000272143 | FGF14-AS2,hsa-mir-183,FERMT2 | UCEC,KICH,CHOL,BRCA,PRAD |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000272143.1 | ENST00000606448.1 | 59 | 218 | 39 |
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