 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PHF1,RBM6,HMGN3,ILF3,DDX49,RBM39,CENPT,ZNF10,TTC14,GMEB2,NOL3,MYPOP,HSF4,THOC6,RBM42,SRRM2,KLF16,IRF3,RBM5,CIRBP,SUGP1,DDX56,TIGD5,OVOL2,ZNF44,MZF1,HES1,CASZ1,SGSM2,ZXDC,ZNF84,RBM4B,DMTF1,TIGD1,GLI4,CPSF1,RBM10,RNPS1,DDX51,NR2F6,TRA2A,ZBTB3,MBD3,PCBP4,THAP3,SURF6,CENPB,DHX34,MBD6,FIZ1,ZGPAT,PPIE,PBX4,USF2,ZNF83,RALY,USF1,ASCL2,CXXC1,RNPC3,SNRPA,MNX1,SAFB2,THOC1,ZNF18,MOV10,DDX17 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | QKI,MBNL1,ATF1,IREB2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000272141 | ENST00000606993 | exon_skip_2091 | chr1:17634547-17634562 | -8.65 | -0.6179 | ARHGEF10L | ENST00000361221 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_44853 | chr10:104010815-104010908 | -13.51 | -0.1689 | SLK | ENST00000369755 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_44998 | chr10:110132304-110132400 | -10.90 | -0.1434 | ADD3 | ENST00000356080 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_48713 | chr10:34336198-34336243 | -9.60 | -0.3429 | PARD3 | ENST00000374789 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_59476 | chr11:57815914-57816001 | -15.40 | -0.1974 | CTNND1 | ENST00000399050 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_60345 | chr11:63903985-63904147 | -36.66 | -0.2477 | MARK2 | ENST00000402010 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_64939 | chr11:112230207-112230230 | -6.91 | -0.3004 | PTS | ENST00000280362 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_114200 | chr14:73279280-73279424 | -23.53 | -0.1769 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_150188 | chr17:27643524-27643620 | -22.26 | -0.2748 | LGALS9 | ENST00000395473 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_378912 | chr3:152446703-152446757 | -10.23 | -0.2558 | MBNL1 | ENST00000282486,ENST00000463374 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_384879 | chr3:52554723-52554879 | -31.64 | -0.2244 | PBRM1 | ENST00000296302 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_386291 | chr3:108050577-108050602 | -9.16 | -0.6543 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_423795 | chr4:55888887-55888932 | -8.04 | -0.3496 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_430601 | chr4:82842139-82842481 | -37.78 | -0.1173 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_456460 | chr6:17771113-17771218 | -18.26 | -0.2227 | KIF13A | ENST00000259711 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_461111 | chr6:90544551-90544632 | -14.03 | -0.3897 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_435063 | chr5:66075023-66075230 | -20.71 | -0.1113 | ERBIN | ENST00000284037 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272141 | ENST00000606993 | exon_skip_21610 | chr1:9737497-9737554 | -9.67 | -0.1758 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_21628 | chr1:9756480-9756510 | -5.90 | -0.3933 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_33516 | chr1:156938417-156938513 | -21.40 | -0.3014 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_133217 | chr16:8635038-8635079 | -15.66 | -0.4894 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_287874 | chr17:29085603-29085648 | -8.39 | -0.5593 | MYO18A | ENST00000527372 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_309204 | chr19:49181348-49181461 | -24.64 | -0.2416 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_340759 | chr2:85552415-85552567 | -18.62 | -0.1411 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_351122 | chr20:36209487-36209898 | -46.08 | -0.1206 | EPB41L1 | ENST00000338074 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_353131 | chr20:58669290-58669453 | -27.82 | -0.1806 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_357772 | chr20:47659398-47659452 | -10.29 | -0.2189 | SULF2 | ENST00000359930,ENST00000484875 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_361434 | chr21:25997359-25997416 | -11.29 | -0.3763 | APP | ENST00000346798 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_368285 | chr22:29329711-29329720 | -3.05 | -0.3812 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_376144 | chr3:100311832-100311877 | -9.55 | -0.3979 | TBC1D23 | ENST00000394144 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_380242 | chr3:186784961-186785101 | -13.17 | -0.1304 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_382356 | chr3:37091466-37091538 | -10.91 | -0.1984 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_382458 | chr3:38131595-38131638 | -10.69 | -0.5345 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_451515 | chr6:41080810-41080897 | -17.66 | -0.2030 | NFYA | ENST00000341376 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_508298 | chr9:136445051-136445111 | -8.91 | -0.1620 | SEC16A | ENST00000313050 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_514511 | chrX:41555599-41555635 | -8.30 | -0.3773 | CASK | ENST00000378163 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_515330 | chrX:65524563-65524614 | -10.12 | -0.4217 | LAS1L | ENST00000374811 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_9446 | chr1:147270931-147271005 | -9.81 | -0.2180 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_41841 | chr10:68756272-68756483 | -25.96 | -0.1266 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_66482 | chr11:126274926-126275021 | -14.26 | -0.1698 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_110959 | chr14:20372732-20372857 | -15.78 | -0.1422 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_111863 | chr14:23565815-23565892 | -15.18 | -0.2811 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_300663 | chr19:1425877-1425960 | -11.14 | -0.1797 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_302168 | chr19:10680345-10680443 | -13.53 | -0.1990 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_353395 | chr20:62130218-62130296 | -13.44 | -0.2278 | LSM14B | ENST00000279068 | In-frame | | ENSG00000272141 | ENST00000606993 | exon_skip_370518 | chr22:50247691-50247776 | -17.18 | -0.2291 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_442657 | chr5:74730259-74730398 | -17.18 | -0.1701 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000272141 | ENST00000606993 | exon_skip_470226 | chr7:103307595-103307708 | -11.27 | -0.1326 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272141.1 | ENST00000606993.1 | 285 | 25 | 882 |
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