 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLIRP,GLI4,THAP4,MYPOP,IRF3,CIRBP,HES6,CENPB,SNRPA,LSM3,VAX2,LSM5,EIF3G,CENPT,ZGLP1,MRM1,SUGP1,DBP,LSM4,NR2F6,ZBTB3,CWC15,CPSF4,SF3B6,NELFE,IRF7,USF1,CXXC1,PHF1,THYN1,DEAF1,DDX49,HSF4,THOC6,RBM42,ZNF48,ATF4,REXO4,TIGD1,DDX51,MBD3,PCBP4,THAP3,MESP1,SRSF2,FIZ1,PBX4,ZNF18,ETV2,SOX12,HMGN3,E2F1,NOL3,THAP8,LSM2,PIN1,RBM8A,RRP7A,SMYD3,DDX41,XPA,THOC7,USF2,RALY,NR1H2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ETV2,ZNF48,HSF4,RRP7A,EIF3G,LSM2,NOL3,CENPB,ZNF18,E4F1,THAP4,CXXC1,THAP7,RBM42,RBM6,SMYD3,PBX4,THAP3,CIRBP,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | ELF1,UBR5,GTF2I,AGO2,BAZ2A,DDX52,ATF1,SMAD1,SF3A1,ZNF45,TFCP2,FUBP1,REST,STAT3,DDX46,PATL1,BACH1,AGO4,ZMAT3,TEP1,CPSF2,FOXJ2,STAU1 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SMAD1,POGK,AGFG1,DHX8,BAZ2A,SMAD5,REST,PLS1,FUBP1,HBP1,AEBP2,BBX,TEP1,ELF1,ZNF28,PHF20,FOXN3,NOP9,DDX42,G3BP1,STAT6,NCBP1,SP2,AGO2,TFCP2,SART3,ELK4,STAT3,DDX6,KAT7,BPTF,CPSF2,ATF1,NCOA2,FOXK1,SRCAP,GLYR1,DDX3X,PUM1,DDX46,KDM2A,NR2C2,SLTM,NCOA3,SYNJ1,G3BP2,CREB1,DDX52,KLF13 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000271869 | ENST00000607315 | exon_skip_6457 | chr1:52083339-52083541 | -16.10 | -0.1376 | BTF3L4 | ENST00000313334 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_514339 | chrX:23713134-23713208 | -6.24 | -0.1156 | ACOT9 | ENST00000336430 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_5818 | chr1:45568484-45568684 | -18.62 | -0.1217 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_382458 | chr3:38131595-38131638 | -7.08 | -0.2360 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_16568 | chr1:201989382-201989531 | -15.33 | -0.1080 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_29583 | chr1:114780109-114780215 | -10.14 | -0.1056 | SIKE1 | ENST00000060969 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_41813 | chr10:68337857-68337996 | -16.24 | -0.1289 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_53559 | chr10:101793912-101793998 | -9.89 | -0.1150 | OGA | ENST00000361464 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_87733 | chr12:120571190-120571291 | -17.47 | -0.1859 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_95500 | chr12:96003837-96003920 | -10.06 | -0.1290 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_97655 | chr12:120579773-120579923 | -9.77 | -0.1191 | POP5 | ENST00000357500 | In-frame | | ENSG00000271869 | ENST00000607315 | exon_skip_111863 | chr14:23565815-23565892 | -15.23 | -0.2417 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_137309 | chr16:66558189-66558348 | -17.94 | -0.1188 | CKLF | ENST00000264001 | In-frame | | ENSG00000271869 | ENST00000607315 | exon_skip_313557 | chr19:5786748-5786845 | -15.88 | -0.2301 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_319223 | chr19:43526200-43526349 | -22.65 | -0.1665 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_324294 | chr2:27774423-27774530 | -11.91 | -0.1156 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_370518 | chr22:50247691-50247776 | -14.37 | -0.1996 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_436035 | chr5:79656957-79657001 | -8.67 | -0.3096 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_445390 | chr5:150403120-150403312 | -25.13 | -0.1470 | CD74 | ENST00000009530 | In-frame | | ENSG00000271869 | ENST00000607315 | exon_skip_466137 | chr7:48103296-48103411 | -11.46 | -0.1158 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_470226 | chr7:103307595-103307708 | -12.98 | -0.1442 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_476549 | chr7:76013741-76013887 | -16.46 | -0.1372 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_300022 | chr18:79919183-79919400 | -25.42 | -0.1304 | PQLC1 | ENST00000397778 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_374581 | chr3:50110378-50110463 | -9.45 | -0.1432 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_326741 | chr2:73946718-73946906 | -14.21 | -0.1110 | DGUOK | ENST00000264093 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_358606 | chr20:63202286-63203807 | -40.81 | -0.1094 | YTHDF1 | ENST00000370339 | In-frame | | ENSG00000271869 | ENST00000607315 | exon_skip_52671 | chr10:97461495-97461622 | -13.52 | -0.1136 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_377198 | chr3:123130479-123130616 | -14.48 | -0.1089 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_494079 | chr8:144099080-144099205 | -21.61 | -0.1831 | SHARPIN | ENST00000398712 | Frame-shift | | ENSG00000271869 | ENST00000607315 | exon_skip_371367 | chr3:9697710-9697866 | -17.41 | -0.1913 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000271869 | ENST00000607315 | exon_skip_52895 | chr10:98431130-98431291 | -19.42 | -0.1541 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000271869.1 | ENST00000607315.1 | 105 | 321 | 638 |
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