 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLIRP,GLI4,THAP4,IRF3,JMJD6,CIRBP,DDX56,IMP3,TIGD5,OVOL2,MZF1,TRUB2,CXXC5,CENPB,SNRPA,SAFB2,LSM3,LSM5,EIF3G,PA2G4,CENPT,ZGLP1,MRM1,SUGP1,PUF60,DBP,LSM4,CREB3,RNPS1,NR2F6,ERAL1,ZBTB3,CWC15,SURF6,DHX34,CPSF4,PPIE,SF3B6,NELFE,IRF7,USF1,CXXC1,HSF1,PHF1,THYN1,DEAF1,DDX49,HSF4,THOC6,RBM42,KLF16,ZNF48,REXO4,TIGD1,RBM10,DDX51,MBD3,PCBP4,THAP3,MESP1,FIZ1,ETV2,SOX12,HMGN3,E2F1,NOL3,THAP8,LSM2,PIN1,RRP7A,DDX41,XPA,THOC7,USF2,RALY,ASCL2,NR1H2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF48,RRP7A,MZF1,EIF3G,LSM2,RBM42,CIRBP,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | AGO1,ELF1,MECP2,ATF1,ADAT1,SF3A1,RBMS2,TFCP2,REST,PATL1,PPIL4,FOXJ2,STAU1 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RBMS2,CNOT4,SMAD1,UBR5,CIC,CELF2,MEF2A,SON,AGFG1,DHX8,BAZ2A,QKI,REST,NFAT5,CEBPZ,CSDE1,HBP1,AEBP2,BBX,CPEB4,NAF1,TEP1,ASH1L,TCF20,BRF2,PUS7L,ELF1,BACH1,ZFR,MECP2,PHF20,RREB1,FOXN3,PPARA,ETS1,CPEB2,G3BP1,IREB2,PUM2,MEF2D,TFCP2,CPSF6,XRN1,SART3,ARNT,AGO1,RBM41,SF3A1,PRDM2,KLF7,DDX6,ADNP2,THOC2,RFX5,CPSF2,ATF2,ATF1,NCOA2,CELF1,ADAT1,SRCAP,DDX3X,GLYR1,PUM1,XPO1,KDM2A,NR2C2,SLTM,SYNJ1,FOXN2,G3BP2,RBM7 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000271737 | ENST00000606089 | exon_skip_5818 | chr1:45568484-45568684 | -21.20 | -0.1122 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_41813 | chr10:68337857-68337996 | -18.91 | -0.1751 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_41841 | chr10:68756272-68756483 | -22.18 | -0.1161 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_74009 | chr11:64773429-64773505 | -14.10 | -0.1855 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_87733 | chr12:120571190-120571291 | -13.37 | -0.1351 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_95407 | chr12:95040475-95040597 | -15.22 | -0.1478 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_97655 | chr12:120579773-120579923 | -15.76 | -0.1261 | POP5 | ENST00000357500 | In-frame | | ENSG00000271737 | ENST00000606089 | exon_skip_111863 | chr14:23565815-23565892 | -12.49 | -0.2048 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_152672 | chr17:42540949-42541206 | -30.07 | -0.1348 | NAGLU | ENST00000225927 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_287763 | chr17:28884224-28884315 | -15.56 | -0.2132 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_319223 | chr19:43526200-43526349 | -21.46 | -0.1522 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_380242 | chr3:186784961-186785101 | -12.61 | -0.1069 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_382458 | chr3:38131595-38131638 | -8.17 | -0.2817 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_442657 | chr5:74730259-74730398 | -12.25 | -0.1047 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_445390 | chr5:150403120-150403312 | -24.15 | -0.1278 | CD74 | ENST00000009530 | In-frame | | ENSG00000271737 | ENST00000606089 | exon_skip_466113 | chr7:48099669-48099787 | -9.68 | -0.1976 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_476549 | chr7:76013741-76013887 | -19.35 | -0.1433 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_95500 | chr12:96003837-96003920 | -10.93 | -0.1584 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_326741 | chr2:73946718-73946906 | -19.39 | -0.1141 | DGUOK | ENST00000264093 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_485083 | chr8:97699753-97699852 | -11.56 | -0.1606 | MTDH | ENST00000336273 | In-frame | | ENSG00000271737 | ENST00000606089 | exon_skip_503171 | chr9:32984630-32984857 | -24.61 | -0.1200 | APTX | ENST00000379819 | Frame-shift | | ENSG00000271737 | ENST00000606089 | exon_skip_143728 | chr16:29993905-29994843 | -29.29 | -0.1031 | HIRIP3 | ENST00000279392 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000271737 | ENSG00000130254 | SAFB2 | ENSG00000099622 | CIRBP | 5 | BLCA,BRCA,CHOL,KIRP,PAAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000271737.1 | ENST00000606089.1 | 118 | 657 | 301 |
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