lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | TEX10,TFAP4,ATAT1,C2orf68,DCAF16,FKTN,ALG9,KIAA1143,EIF2B5,DDTL,LIAS,CEP63,ERI2,ZC3H8,MRPS22,OSGEPL1,AARSD1,TTC14,ARGLU1,GTF2E1,MSL2,NEPRO,EIF2A,DNAJC19,LYRM7,DHX36,TMEM186,ZFP62,FAM216A,MBTD1,COX15,UBE2G2,RUVBL1,ALKBH2,TWNK,ZBED8,ZXDC,IQCB1,DHODH,LTO1,TOPBP1,OGT,METAP1D,TIGD1,TAF1D,MRPS25,NKAPD1,DBR1,PMS1,GTPBP8,BCCIP,POLG2,PSMG4,BBS10,KHDC4,METTL6,TCAIM,PHF7,DDX55,SETD6,UMPS,MIX23,HEMK1,TIMMDC1,NSUN6,WDR5B,TBC1D5,MRRF,THOC1,RPAIN,FAM200A,RMND5A,CCDC14,VPS36,TRNT1 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | HEMK1,DBR1,TRMT10C,MSL2,ATAT1,TOPBP1,YEATS2,OSGEPL1,KIAA0907,TFAP4,SETD6,NIT2,AARSD1,TBC1D5,METTL6,SENP5,FKTN,ALKBH2,C2orf68,TIMMDC1,TCAIM,ERI2,ALG9,ARGLU1,ADSL,CEP63,C11orf57 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CAPNS1,LRP10 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000271270.4 | ENST00000603884.4 | 123 | 69 | 440 | ENSG00000271270.4 | ENST00000605830.4 | 65 | 249 | 446 | ENSG00000271270.4 | ENST00000605698.1 | 138 | 527 | 943 | ENSG00000271270.4 | ENST00000604747.1 | 115 | 994 | 647 |
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