lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | RPAP2,KRCC1,MGAT4A,VAMP1,HELQ,CPLANE1,ERI2,PRPSAP2,MFSD8,DNAJC27,WDR89,FASTKD3,IPP,DYNC2LI1,MCEE,C1orf56,SUGP2,VAMP4,N4BP2L2,FBXL4,L3HYPDH,DMTF1,RNF170,GPATCH11,ZNF24,WDCP,IRAK4,ZFP14,RHOT1,WDR5B,ST7L,MSANTD2,CCDC14,FAM200A,MYO9A,LZTFL1,ARAP2,ABITRAM,KBTBD3,CLK4,STRADB,ZBED5,ACTR6,TTC14,UFSP2,GKAP1,EXOC8,CAPN7,SMAD2,SCYL3,ECHDC2,ZFP1,NCBP1,ARID4B,BLZF1,ASH1L,MPLKIP,CNST,POLG2,CLOCK,LYPLAL1,PTAR1,RIC8B,CPSF7,BBIP1,THOC2,CLK1,TMEM231,TIMMDC1,ZBTB6,ATXN7,GABPB1,RABL2A,RPAIN,WASHC3,OFD1,VPS36,ACYP1,INTS6,PURA,XPNPEP3,MBD5,MIS12,RSRC2,TTC21B,CAMKMT,NPAT,AP1G1,RAB3GAP2,ZADH2,PRMT9,ZFP62,ZBED8,ORMDL1,CHD9,YTHDC1,COQ7,C22orf39,ORC2,FAM229B,SUPT20H,ADHFE1,DCUN1D2,NR2C2,C6orf62,PAN2,C2orf76,LRTOMT,ZNF14,SCRN3,FAM114A2,PKN2,THEM4,COG7,METTL4,ATG2B,CIR1,MTMR4,MBTD1,DMAC2L,N4BP2L1,SP3,SEPSECS,TMEM50B,CEP192,LYSMD1,ZNF69,EAPP,PGGT1B,ZFP3,RCHY1,MARCHF6,SWT1,LTN1,HERC4,SKA2,SDHD,TMEM168,OARD1,RAB28,TMEM254,ATM,FAM172A,CEP20,THADA,TRMO,FANCL,DPY19L3,MED7,PHKA2,FBXL3,NFU1,PNPLA4,NICN1,CEP57,CEP68,ZC3H10,BBOF1,SPICE1,PPWD1,KLHL15,RSBN1,PIBF1,AHI1,ZNF70,INO80D,ICE2,TMEM18,SH3YL1,ASTE1,RORA,TCAIM,KRIT1,ZXDA,GLMN,METTL21A,ACYP2,GCFC2,THOC1,WDR59,ZNF25,TRNT1,AIMP1,ASF1A,SESN3,KIAA1143,ZZZ3,DENND6A,ODR4,ZMYM5,TAMM41,TMED8,IFT74,DRC3,SNRNP48,RC3H1,PCID2,ZNF44,TRIM13,SMG1,FGFR1OP2,NUDT12,PHC1,ELP4,BCLAF3,TCTA,PPM1B,ZCCHC9,IFT80,ABRAXAS1,GGNBP2,UBN2,METTL23,GLT8D1,TRMT2B,C17orf75,LRIG2,FBXO3,ABHD18,LCMT2,MTA3,TARS3,CYP4V2,CEP70,ZNF41,ZC3H8,ENOSF1,DZIP3,ANKRD49,PAXBP1,DNAJC19,GANC,CCDC125,COA1,KCTD18,TADA2A,TGDS,PHF11,RSRP1,EYA3,CETN3,MLLT10,BHLHB9,PEX11A,CHD2,USP40,MED23,NVL,UNC50,PEX13,UCHL5,MYNN,MTIF2,METTL14,HEMK1,MIER3,TMEM218,IFT20,PUS10,C18orf32,TRIM4,GPBP1,C2orf68,MRE11,HIBCH,GK5,MFF,NDUFAF7,RBM6,TRMT13,TTBK2,AKTIP,PDS5B,CCDC82,ARID4A,PIGF,LRBA,VPS54,LYRM7,SMAD4,ACP1,NSL1,EPM2AIP1,TTC12,PSME3IP1,HECTD4,YY1AP1,KHDC4,NADK2,PNISR,CDC37L1,AMT,CEPT1,USP45,CARD8,AMZ2,ATAD2B,ZNF10,EVI5,DET1,FBXO9,FAM126B,SPRYD4,C11orf1,INVS,PREPL,ESCO1,PRKAB2,MTMR10,CEP63,TMEM17,CDC42BPA,ANGEL2,OSBPL9,MDM1,MYSM1,N4BP2,STAM2,TTC5,KATNBL1,MKS1,DBR1,SPIN3,TASP1,IFT88,GABPA,SLX4IP,SUGT1,TAF12,KLHDC1,AFTPH,TTC30B,DHFR2,EFCAB7,TTC19,RNPC3,ERLIN2,RPS6KB1,INCA1,ZMYND12,LRCH3,CNOT4,SON,N6AMT1,KANSL3,DHX57,TCEAL1,SIKE1,RLIM,MPHOSPH9,CCNT2,PTCD3,ORC3,SERP1,BRWD1,TIGD6,RBM26,PLA2G6,NAPEPLD,SPATA6,CCNH,TERF2,RBM25,CEBPZOS,RO60,TBCK,BBS10,MLH3,SP4,SPRTN,RBM43,SETD6,KANSL1L,POLI,TTC30A,PRPF39,ITSN2,ETNK1,ERMARD,KIAA0753,WDFY3,HEATR5B,EPC1,CMTR2,HEXIM2,CEP44,CENPC,DBT,LIG4,TLK1,GMCL1,ANKRA2,CCDC90B,C2orf49,POLK,PLEKHA3,NCOR1,CELF1,TMEM161B,CCDC121,SDCCAG8,RBM45,YAE1,SPATA5,FAM149B1,OGG1,PMS1,RNFT1,METTL6,SPOP,TIA1,ZNF83,MOSMO,KANSL1,NSUN6,FAM161B,SYNJ1,FAM161A,C4orf36,RBBP5,C3orf38,SZT2,USP48,GIN1,ZCCHC10,HELZ,LIPT1,CWF19L2,ELF2,LYST,NUDCD2,ZNF43,COA5,LUC7L2,BRD8,SACM1L,BBS4,TRA2A,USP16,KMT2A,REV1,BROX,HINFP,XPA,PCBD2,NR2C1,ETFRF1,NRIP2,RUFY2,WBP1,RBM33,RAD17,ADAL,NOL8,USP51,CEBPZ,FPGT,GABPB2,MPHOSPH10,ATXN7L1,TRIM66,RBM39,TAF9B,TADA1,TATDN3,POT1,TMEM267,ZNF2,RRNAD1,ZXDC,INTS3,PIGL,AASDH,RABGAP1L,PAAF1,ARV1,NDUFAF6,GPATCH2,DCAF8,IKZF5,TOR1AIP1,C2CD5,ABCA5,PHYKPL,SF3B1,NHLRC2,FRA10AC1,OGA,RECQL5,PAN3,LARP7,PIGM,PTCD2,CWC22,DDX59,C2orf42,SUPT7L,MINDY2,RICTOR,OSGEPL1,PEX1,CHORDC1,S100PBP,RBM4,C2orf74,TOGARAM1,IMMP2L,FAM76B,POGZ,AKAP10,RBMX,RBM4B,DTWD1,EXOG,MRPS31,WDSUB1,ORC4,TEFM,FUBP1,PRIMPOL,GID4,THAP9,TRIM33,EZH1,LRP6,MRNIP,THAP6,KIDINS220,ELMOD3,DDX17,GGPS1,SLC7A6,SENP7,RSBN1L,MTRF1,RAD52,LIAS,DYRK1A,ASXL2,STRN,CTDSPL2,MARF1,GNPDA2,NEK1,TRPM7,IFT46,TRAPPC8,EXOC6B,GPALPP1,MAP4K3,HTRA2,C12orf76,FAM228B,ELK4,TIGD1,TRIM52,NCBP3,PPP1R21,SPIN2B,CRYZL1,SUPT3H,FBXO11,LYRM1,ATP6V1E2,TTC32,MTX3,TM2D1,ZMAT1,YOD1,HP1BP3,STRADA,TAPT1,ZFX,CBR4,ZNF18,EIF2D,APPBP2,H2AC6,ARNT,TPRKB,RBM48,PIKFYVE,SPAG16,DUSP28,PUM2,RBM5,CPEB3,NKTR,CCT4,CEP162,ZFP28,BCDIN3D,ZNF17,TRMT61B,CRBN,TUBE1,ZNF84,PRPSAP1,CCP110,TUBD1,WDR33,NMRK1,TRA2B,ZDHHC6,PCMTD1,CRIPT,MRPS14,USPL1,TTC33,TBC1D5,RABL2B,TRMT10A,ATF2 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | FAM76B,MCEE,TASP1,ZNF18,CEP57,KIZ,OSGEPL1,ZMAT1,WDR60,GPBP1,ORC2,LTN1,PAAF1,METTL6,PUM2,ASF1A,EIF2D,EFHC1,RORA,USP25,FBXO11,FER,HEMK1,PDIK1L,MRPS31,RBM5,NCBP3,THOC2,SZT2,ZNF14,SACM1L,SETD6,COA1,MYNN,NAPEPLD,ZNF83,TAF12,CRYZL1,ATG4C,MPLKIP,TEFM,RIF1,CALCOCO2,ENOSF1,ZC3H6,NCOR1,IDNK,ZC3H11A,YOD1,DBR1,EVI5,MPHOSPH10,SLC25A14,VAMP1,TRMO,C2CD5,C17orf75,IFT74,TBCK,KIAA0907,MLLT10,STRADA,BROX,MPHOSPH9,ZNF69,NSUN6,ABHD18,EYA3,TLK1,NFX1,BBIP1,PREPL,SPICE1,TTC12,C2orf68,ELAC1,XPNPEP3,PRMT9,ANGEL2,UFSP2,MFSD8,CAMKMT,S100PBP,CEPT1,MTIF2,PIGV,AIMP1,RLIM,PAN3,RBM6,PCBD2,TMEM50B,ERI2,NUDT12,USP34,MDM4 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | PRKACA,NACC1,SH3GL1,TMEM51,ARHGDIA,AP2A1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000270820 | ENSG00000119636 | BBOF1 | BRCA,GBM,KICH,KIRC,THCA | | KICH | ENSG00000270820 | ENSG00000121310 | ECHDC2 | BRCA,GBM,KICH,KIRC,LUAD,OV,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000132122 | SPATA6 | BRCA,KICH,KIRC,LUAD,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000135541 | AHI1 | BRCA,KICH,KIRC,LAML,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000138036 | DYNC2LI1 | BRCA,GBM,KICH,KIRC,LUAD,LUSC,PCPG,PRAD,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000161048 | NAPEPLD | BRCA,KICH,KIRC,LAML,THCA,THYM,UVM | | KICH | ENSG00000270820 | ENSG00000219626 | FAM228B | BRCA,GBM,KICH,KIRC,LGG,LUAD,OV,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000032742 | IFT88 | GBM,KICH,KIRC,LAML,LUAD,PCPG,THCA,THYM,UVM | | KICH | ENSG00000270820 | ENSG00000066185 | ZMYND12 | GBM,KICH,KIRC,PRAD,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000108423 | TUBD1 | GBM,KICH,KIRC,LAML,LUAD,PCPG,THCA,THYM,UVM | | KICH | ENSG00000270820 | ENSG00000150433 | TMEM218 | GBM,KICH,KIRC,LAML,LUAD,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000180573 | H2AC6 | GBM,KICH,KIRC,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000186889 | TMEM17 | GBM,KICH,LUSC,OV,PCPG,PRAD,UVM | | KICH | ENSG00000270820 | ENSG00000196659 | TTC30B | GBM,KICH,KIRC,LAML,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000197557 | TTC30A | GBM,KICH,KIRC,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000203778 | FAM229B | GBM,KICH,LGG,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000071073 | MGAT4A | KICH,KIRC,LUAD,THYM,UVM | | KICH | ENSG00000270820 | ENSG00000143919 | CAMKMT | KICH,KIRC,LAML,LUAD,THCA | | KICH | ENSG00000270820 | ENSG00000156050 | FAM161B | KICH,LAML,PCPG,THCA,UVM | | KICH | ENSG00000270820 | ENSG00000162869 | PPP1R21 | KICH,KIRC,LUAD,LUSC,OV,PCPG,THYM,UVM | | KICH |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000166037 | CEP57 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000128694 | OSGEPL1 | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000115942 | ORC2 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000055917 | PUM2 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000003756 | RBM5 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000188177 | ZC3H6 | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000188177 | ZC3H6 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000141027 | NCOR1 | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000145348 | TBCK | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000138078 | PREPL | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000174606 | ANGEL2 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000152520 | PAN3 | 5 | KICH,KIRC,LUAD,THCA,THYM | ENSG00000270820 | ENSG00000116539 | ASH1L | ENSG00000115464 | USP34 | 5 | BRCA,KICH,KIRC,LUAD,PCPG | ENSG00000270820 | ENSG00000126804 | ZBTB1 | ENSG00000198625 | MDM4 | 5 | KICH,KIRC,LUAD,THCA,THYM |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000270820 | ENST00000603652 | NACC1 | ENSG00000160877 | ENST00000292431 | -0.1015 | 1 | KICH | - | ENSG00000270820 | ENST00000603652 | NACC1 | ENSG00000160877 | ENST00000585663 | -0.1010 | 10 | KICH | - | ENSG00000270820 | ENST00000603028 | NACC1 | ENSG00000160877 | ENST00000292431 | -0.1014 | 1 | KICH | - | ENSG00000270820 | ENST00000603199 | NACC1 | ENSG00000160877 | ENST00000292431 | -0.1194 | 1 | KICH | - | ENSG00000270820 | ENST00000603199 | NACC1 | ENSG00000160877 | ENST00000585663 | -0.1200 | 13 | KICH | - | ENSG00000270820 | ENST00000578974 | TMEM51 | ENSG00000171729 | ENST00000428417 | -0.1118 | 1 | KICH | - | ENSG00000270820 | ENST00000578974 | TMEM51 | ENSG00000171729 | ENST00000376014 | -0.1118 | 1 | KICH | - | ENSG00000270820 | ENST00000578974 | TMEM51 | ENSG00000171729 | ENST00000400796 | -0.1118 | 1 | KICH | - | ENSG00000270820 | ENST00000578974 | TMEM51 | ENSG00000171729 | ENST00000376008 | -0.1118 | 1 | KICH | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000270820.4 | ENST00000603652.1 | 62 | 488 | 300 | ENSG00000270820.4 | ENST00000603028.4 | 69 | 349 | 140 | ENSG00000270820.4 | ENST00000603199.1 | 93 | 76 | 357 | ENSG00000270820.4 | ENST00000578974.2 | 108 | 427 | 101 | ENSG00000270820.4 | ENST00000605437.1 | 81 | 4 | 249 |
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