lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CDKN3,CCNB2,SHMT2,RACGAP1,MYH9,CENPN,KIF18B,CCT5,MCM4,DLGAP5,BUB1,MARS1,PRC1,PKMYT1,RAN,CORO1C,AURKB,UHRF1,CENPA,TUBA1C,KIF23,PRR11,GAPDH,NUSAP1,PLK1,CDC20 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000270179 | ENST00000602900 | exon_skip_41841 | chr10:68756272-68756483 | -20.83 | -0.1151 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000270179 | ENST00000602900 | exon_skip_74009 | chr11:64773429-64773505 | -11.35 | -0.1493 | SF1 | ENST00000377390 | Frame-shift | ENSG00000270179 | ENST00000602900 | exon_skip_111863 | chr14:23565815-23565892 | -10.98 | -0.1464 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000270179 | ENST00000602900 | exon_skip_319223 | chr19:43526200-43526349 | -19.47 | -0.1509 | ETHE1 | ENST00000292147 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_246943 | ENSG00000270179.1 | chr11 | 113368805 | + | sense_intronic | RP11-159N11.4 | ENST00000602900.1 | sense_intronic | RP11-159N11.4-001 | LncEditing_246949 | ENSG00000270179.1 | chr11 | 113368854 | + | sense_intronic | RP11-159N11.4 | ENST00000602900.1 | sense_intronic | RP11-159N11.4-001 | LncEditing_246950 | ENSG00000270179.1 | chr11 | 113368855 | + | sense_intronic | RP11-159N11.4 | ENST00000602900.1 | sense_intronic | RP11-159N11.4-001 |
Edited-associated DElncRNAs in cancer. |
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LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000270179 | LncEditing_246943 | KIRC | chr11_113368805_+ | 2.672080e+00 | 1.819470e+00 | 1.803606e+00 | 9.497614e+00 | 2.147535e-21 | 5.445796e-21 | UP | ENSG00000270179 | LncEditing_246949 | KIRC | chr11_113368854_+ | 2.666604e+00 | 1.761074e+00 | 1.670709e+00 | 1.105633e+01 | 2.042814e-28 | 8.928298e-28 | UP | ENSG00000270179 | LncEditing_246950 | KIRC | chr11_113368855_+ | 2.728315e+00 | 1.811477e+00 | 1.692496e+00 | 9.915807e+00 | 3.553746e-23 | 1.043649e-22 | UP | ENSG00000270179 | LncEditing_246943 | PCPG | chr11_113368805_+ | 2.775262e+00 | 1.374098e+00 | 9.860580e-01 | 8.500025e+00 | 1.895499e-17 | 5.117847e-16 | UP | ENSG00000270179 | LncEditing_246949 | PCPG | chr11_113368854_+ | 3.271587e+00 | 1.553856e+00 | 9.309796e-01 | 8.490906e+00 | 2.050327e-17 | 5.244520e-16 | UP | ENSG00000270179 | LncEditing_246950 | PCPG | chr11_113368855_+ | 3.314242e+00 | 1.589637e+00 | 9.434122e-01 | 8.202729e+00 | 2.349911e-16 | 4.965464e-15 | UP | ENSG00000270179 | LncEditing_246943 | KIRP | chr11_113368805_+ | 3.560369e+00 | 2.866690e+00 | 3.198558e+00 | 2.226259e+00 | 2.599685e-02 | 2.664974e-02 | UP | ENSG00000270179 | LncEditing_246949 | KIRP | chr11_113368854_+ | 3.893101e+00 | 2.681809e+00 | 1.859726e+00 | 4.856268e+00 | 1.196185e-06 | 1.772564e-06 | UP | ENSG00000270179 | LncEditing_246950 | KIRP | chr11_113368855_+ | 3.782191e+00 | 2.754924e+00 | 2.187179e+00 | 4.659503e+00 | 3.169745e-06 | 4.532533e-06 | UP | ENSG00000270179 | LncEditing_246943 | THCA | chr11_113368805_+ | 2.970034e+00 | 2.734187e+00 | 8.377495e+00 | 2.723896e+00 | 6.451673e-03 | 6.964615e-03 | UP | ENSG00000270179 | LncEditing_246949 | THCA | chr11_113368854_+ | 3.080440e+00 | 2.580481e+00 | 3.913954e+00 | 5.546109e+00 | 2.920962e-08 | 4.810532e-08 | UP | ENSG00000270179 | LncEditing_246950 | THCA | chr11_113368855_+ | 3.003986e+00 | 2.708324e+00 | 6.689949e+00 | 3.595959e+00 | 3.231981e-04 | 3.949481e-04 | UP | ENSG00000270179 | LncEditing_246943 | CHOL | chr11_113368805_+ | 2.778614e+00 | 1.894416e+00 | 1.809586e+00 | 1.989817e+00 | 4.661108e-02 | 4.698397e-02 | UP | ENSG00000270179 | LncEditing_246943 | THYM | chr11_113368805_+ | 4.743855e+00 | 2.520223e+00 | 1.095880e+00 | 5.454261e+00 | 4.917701e-08 | 2.006901e-07 | UP | ENSG00000270179 | LncEditing_246949 | THYM | chr11_113368854_+ | 4.749851e+00 | 2.392774e+00 | 1.010920e+00 | 5.794848e+00 | 6.838320e-09 | 3.985346e-08 | UP | ENSG00000270179 | LncEditing_246950 | THYM | chr11_113368855_+ | 4.750681e+00 | 2.654282e+00 | 1.190742e+00 | 4.879097e+00 | 1.065726e-06 | 3.008456e-06 | UP | ENSG00000270179 | LncEditing_246943 | OV | chr11_113368805_+ | 2.433706e+00 | 1.217132e+00 | 1.000331e+00 | 1.000950e+01 | 1.384566e-23 | 8.690160e-23 | UP | ENSG00000270179 | LncEditing_246949 | OV | chr11_113368854_+ | 2.152970e+00 | 1.026130e+00 | 9.353530e-01 | 1.180308e+01 | 3.762645e-32 | 6.406948e-31 | UP | ENSG00000270179 | LncEditing_246950 | OV | chr11_113368855_+ | 2.155435e+00 | 1.087467e+00 | 1.013164e+00 | 1.127759e+01 | 1.693191e-29 | 2.008889e-28 | UP | ENSG00000270179 | LncEditing_246943 | LUAD | chr11_113368805_+ | 2.329947e+00 | 1.307318e+00 | 1.199491e+00 | 7.847356e+00 | 4.249004e-15 | 8.324972e-15 | UP | ENSG00000270179 | LncEditing_246949 | LUAD | chr11_113368854_+ | 2.654377e+00 | 1.284292e+00 | 9.547454e-01 | 8.732971e+00 | 2.480693e-18 | 6.173219e-18 | UP | ENSG00000270179 | LncEditing_246943 | PRAD | chr11_113368805_+ | 4.198207e+00 | 3.586470e+00 | 4.401245e+00 | 4.223875e+00 | 2.401376e-05 | 3.091967e-05 | UP | ENSG00000270179 | LncEditing_246949 | PRAD | chr11_113368854_+ | 4.303282e+00 | 3.365331e+00 | 2.819372e+00 | 6.488795e+00 | 8.652550e-11 | 1.693264e-10 | UP | ENSG00000270179 | LncEditing_246950 | PRAD | chr11_113368855_+ | 4.216133e+00 | 3.486390e+00 | 3.647154e+00 | 5.315270e+00 | 1.064991e-07 | 1.601551e-07 | UP | ENSG00000270179 | LncEditing_246943 | BRCA | chr11_113368805_+ | 3.250831e+00 | 1.679709e+00 | 1.049762e+00 | 1.676019e+01 | 4.770619e-63 | 3.677680e-62 | UP | ENSG00000270179 | LncEditing_246949 | BRCA | chr11_113368854_+ | 3.408681e+00 | 1.527052e+00 | 8.632113e-01 | 2.028807e+01 | 1.639018e-91 | 5.674123e-90 | UP | ENSG00000270179 | LncEditing_246950 | BRCA | chr11_113368855_+ | 3.480797e+00 | 1.570053e+00 | 8.706214e-01 | 1.974567e+01 | 8.740035e-87 | 2.443848e-85 | UP | ENSG00000270179 | LncEditing_246943 | PAAD | chr11_113368805_+ | 2.338018e+00 | 1.462688e+00 | 1.477837e+00 | 3.994854e+00 | 6.473400e-05 | 9.797578e-05 | UP | ENSG00000270179 | LncEditing_246949 | PAAD | chr11_113368854_+ | 2.566891e+00 | 1.434373e+00 | 1.191041e+00 | 5.561497e+00 | 2.674701e-08 | 7.953094e-08 | UP | ENSG00000270179 | LncEditing_246950 | PAAD | chr11_113368855_+ | 2.746457e+00 | 1.441407e+00 | 1.075160e+00 | 4.877967e+00 | 1.071849e-06 | 2.209456e-06 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000270179 | LncEditing_246943 | -4.196194e-01 | 2.225362e-07 | 1.128964e-06 | ENSG00000270179 | LncEditing_246949 | -3.884217e-01 | 1.910593e-09 | 2.207796e-08 | ENSG00000270179 | LncEditing_246950 | -3.968491e-01 | 2.665773e-07 | 1.320192e-06 | ENSG00000270179 | LncEditing_246943 | -4.569025e-01 | 2.070194e-03 | 8.862573e-03 | ENSG00000270179 | LncEditing_246950 | -3.416243e-01 | 3.580066e-02 | 4.556447e-02 | ENSG00000270179 | LncEditing_246950 | 3.593930e-01 | 1.309988e-02 | 1.860563e-02 | ENSG00000270179 | LncEditing_246943 | -3.515369e-01 | 1.254732e-04 | 2.678009e-04 | ENSG00000270179 | LncEditing_246949 | -4.884560e-01 | 6.607384e-13 | 9.448560e-11 | ENSG00000270179 | LncEditing_246950 | -4.584369e-01 | 6.702915e-10 | 1.654649e-08 | ENSG00000270179 | LncEditing_246943 | -6.090874e-01 | 9.584894e-04 | 2.285629e-03 | ENSG00000270179 | LncEditing_246949 | -5.541312e-01 | 5.284250e-06 | 5.460392e-05 | ENSG00000270179 | LncEditing_246950 | -3.969340e-01 | 4.745253e-03 | 7.742254e-03 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000270179 | ENST00000602900 | RACGAP1 | ENSG00000161800 | ENST00000548961 | -0.2633 | 309 | KICH | - | ENSG00000270179 | ENST00000602900 | RACGAP1 | ENSG00000161800 | ENST00000548598 | -0.1013 | 1 | KICH | - | ENSG00000270179 | ENST00000602900 | CENPN | ENSG00000166451 | ENST00000299572 | -0.3833 | 1 | KICH | - | ENSG00000270179 | ENST00000602900 | CENPN | ENSG00000166451 | ENST00000428963 | -2.8050 | 605 | KICH | - | ENSG00000270179 | ENST00000602900 | GAPDH | ENSG00000111640 | ENST00000396856 | -0.1020 | 73 | KICH | - | ENSG00000270179 | ENST00000602900 | GAPDH | ENSG00000111640 | ENST00000396859 | -0.1020 | 74 | KICH | - | ENSG00000270179 | ENST00000602900 | GAPDH | ENSG00000111640 | ENST00000396858 | -0.1134 | 23 | KICH | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000270179.1 | ENST00000602900.1 | 61 | 40 | 225 |
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