 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | KLF6,RBM5,KRR1,ZNF83,TRA2A,SKIL,SFPQ,RBM6,RNPC3,CPEB2,FOXP1,THOC1,RBM39,FOSL1,ZNF84,TTC14,CENPT,DDX17,NAF1,CELF1,NR2C1,DMTF1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SKIL,RBM5,E4F1,KLF6,RBM39,CELF1,FOXP1,ZNF83,DDX17,RBM6 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000270069 | ENST00000602507 | exon_skip_41813 | chr10:68337857-68337996 | -15.33 | -0.1207 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_77641 | chr11:117207066-117207160 | -13.91 | -0.3312 | PCSK7 | ENST00000320934 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_374552 | chr3:50104247-50104308 | -9.21 | -0.1771 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_380242 | chr3:186784961-186785101 | -14.74 | -0.2890 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_382458 | chr3:38131595-38131638 | -10.73 | -0.3461 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_444499 | chr5:138164086-138164133 | -6.56 | -0.1458 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_470226 | chr7:103307595-103307708 | -11.71 | -0.1428 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000270069 | ENST00000602507 | exon_skip_133217 | chr16:8635038-8635079 | -13.58 | -0.4850 | METTL22 | ENST00000381920 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000270069.1 | ENST00000602461.1 | 100 | 577 | 275 | | ENSG00000270069.1 | ENST00000602507.1 | 98 | 635 | 931 |
|
