lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | MCTS1,MICU1,MRPL37,GNS,ATP6V1D,ATP6V0D1,DDT,HSPA8,GET3,SNX12,HEXB,GSTZ1,DAD1,NTMT1,TMBIM1,EMC3,ATP6V0E1,GSTO1,LRP10,LAMP1,PCCB,PRDX1,BTD,PLEKHB2,ATP5MC3,SARS1,ZNF622,ABHD5,RTCB,ST13,PSMD1,ECHS1,PEX19 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000269352 | ENST00000599259 | exon_skip_386274 | chr3:108049618-108049651 | -3.60 | -0.1895 | CD47 | ENST00000361309 | In-frame | ENSG00000269352 | ENST00000599259 | exon_skip_1234 | chr1:11658532-11658628 | -16.34 | -0.2867 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000269352 | ENST00000599259 | exon_skip_284037 | chr17:79083481-79083590 | -19.39 | -0.1979 | ENGASE | ENST00000579016 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_4796 | chr1:41007448-41007545 | -17.34 | -0.2890 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_38175 | chr1:234398381-234398553 | -18.33 | -0.1328 | TARBP1 | ENST00000040877 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_66482 | chr11:126274926-126275021 | -15.50 | -0.1845 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_111863 | chr14:23565815-23565892 | -13.25 | -0.2246 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_114365 | chr14:74290026-74290118 | -13.19 | -0.1609 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_290158 | chr17:42953723-42953778 | -7.18 | -0.1465 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_327433 | chr2:86125794-86125880 | -11.42 | -0.2538 | PTCD3 | ENST00000254630 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_370518 | chr22:50247691-50247776 | -18.26 | -0.2945 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_377198 | chr3:123130479-123130616 | -18.65 | -0.1680 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_382458 | chr3:38131595-38131638 | -9.59 | -0.2997 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_384420 | chr3:49812647-49812738 | -16.65 | -0.2413 | UBA7 | ENST00000333486 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_499567 | chr9:128325142-128325239 | -16.34 | -0.2476 | COQ4 | ENST00000300452 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_41813 | chr10:68337857-68337996 | -16.36 | -0.1435 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_95407 | chr12:95040475-95040597 | -13.46 | -0.1150 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_110959 | chr14:20372732-20372857 | -15.64 | -0.1314 | TEP1 | ENST00000262715 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_133217 | chr16:8635038-8635079 | -12.25 | -0.4083 | METTL22 | ENST00000381920 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_309204 | chr19:49181348-49181461 | -19.95 | -0.1956 | TRPM4 | ENST00000252826 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_340759 | chr2:85552415-85552567 | -16.92 | -0.1446 | GGCX | ENST00000233838 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_380242 | chr3:186784961-186785101 | -14.60 | -0.1339 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_387016 | chr3:121788283-121788432 | -11.81 | -0.1094 | IQCB1 | ENST00000310864 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_442657 | chr5:74730259-74730398 | -14.80 | -0.1096 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_2106 | chr1:17648553-17648675 | -24.04 | -0.2090 | ARHGEF10L | ENST00000361221 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_9446 | chr1:147270931-147271005 | -10.14 | -0.1988 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_23423 | chr1:26294204-26294331 | -15.42 | -0.1254 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_41841 | chr10:68756272-68756483 | -20.28 | -0.1056 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_52701 | chr10:97468965-97469104 | -20.70 | -0.2250 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_53559 | chr10:101793912-101793998 | -11.40 | -0.1462 | OGA | ENST00000361464 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_58412 | chr11:43892040-43892129 | -9.38 | -0.1400 | ALKBH3 | ENST00000302708 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_62623 | chr11:69079833-69079883 | -12.13 | -0.4332 | TPCN2 | ENST00000294309 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_74009 | chr11:64773429-64773505 | -18.35 | -0.2585 | SF1 | ENST00000377390 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_87733 | chr12:120571190-120571291 | -11.99 | -0.1276 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_92074 | chr12:50142052-50142110 | -7.05 | -0.4406 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_108095 | chr14:73955450-73955509 | -10.07 | -0.2398 | COQ6 | ENST00000334571 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_111870 | chr14:23566561-23566686 | -18.71 | -0.1834 | AP1G2 | ENST00000397120 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_114376 | chr14:74293153-74293248 | -15.07 | -0.2123 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_127618 | chr15:58890280-58890461 | -17.02 | -0.1025 | SLTM | ENST00000380516 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_128982 | chr15:72250844-72250954 | -20.15 | -0.2190 | PARP6 | ENST00000287196,ENST00000569795 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_138351 | chr16:70469151-70469323 | -20.37 | -0.1643 | FUK | ENST00000288078 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_139933 | chr16:90035632-90035687 | -11.79 | -0.2183 | GAS8 | ENST00000268699 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_285958 | chr17:5404098-5404246 | -19.05 | -0.1524 | NUP88 | ENST00000573584 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_292904 | chr17:69251746-69251866 | -14.41 | -0.1298 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | ENSG00000269352 | ENST00000599259 | exon_skip_296625 | chr18:42057882-42058051 | -20.03 | -0.1727 | PIK3C3 | ENST00000262039 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_300663 | chr19:1425877-1425960 | -9.38 | -0.2181 | DAZAP1 | ENST00000233078 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_302168 | chr19:10680345-10680443 | -12.21 | -0.1607 | ILF3 | ENST00000590261 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_313557 | chr19:5786748-5786845 | -18.71 | -0.2201 | DUS3L | ENST00000309061 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_326885 | chr2:74490024-74490127 | -20.23 | -0.2734 | TTC31 | ENST00000233623 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_327748 | chr2:95410863-95411026 | -23.00 | -0.1513 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_333962 | chr2:219247112-219247246 | -16.33 | -0.1247 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_335558 | chr2:240596680-240596942 | -38.40 | -0.1524 | CAPN10 | ENST00000391984 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_353131 | chr20:58669290-58669453 | -26.40 | -0.1913 | STX16 | ENST00000371141 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_361485 | chr21:29008239-29008307 | -11.45 | -0.2290 | RWDD2B | ENST00000493196 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_365497 | chr22:38067703-38067770 | -12.50 | -0.3676 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_370700 | chr22:50314399-50314494 | -15.33 | -0.2159 | DENND6B | ENST00000413817 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_374497 | chr3:49999439-49999513 | -11.70 | -0.2388 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_374551 | chr3:50100531-50100605 | -11.49 | -0.2128 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_436035 | chr5:79656957-79657001 | -8.00 | -0.2051 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_438188 | chr5:141638954-141639021 | -12.34 | -0.2057 | RELL2 | ENST00000297164,ENST00000444782 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_444499 | chr5:138164086-138164133 | -7.51 | -0.1598 | BRD8 | ENST00000254900 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_446758 | chr5:178212972-178213103 | -17.38 | -0.1889 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_470226 | chr7:103307595-103307708 | -11.05 | -0.1625 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_509943 | chrX:47175018-47175092 | -13.32 | -0.1903 | RBM10 | ENST00000377604 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_511212 | chrX:71555189-71555385 | -18.29 | -0.1033 | OGT | ENST00000373719 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_11029 | chr1:154989559-154989707 | -20.02 | -0.1820 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_13857 | chr1:168038370-168038488 | -12.76 | -0.2239 | DCAF6 | ENST00000312263 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_59071 | chr11:47234756-47234934 | -17.95 | -0.1088 | DDB2 | ENST00000256996 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_141595 | chr16:4801266-4801321 | -11.79 | -0.2406 | ROGDI | ENST00000322048 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_374581 | chr3:50110378-50110463 | -11.23 | -0.2389 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_77641 | chr11:117207066-117207160 | -14.61 | -0.1642 | PCSK7 | ENST00000320934 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_297696 | chr18:677742-677872 | -14.62 | -0.1700 | ENOSF1 | ENST00000251101 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_357254 | chr20:44622587-44622652 | -16.10 | -0.3578 | ADA | ENST00000372874 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_374552 | chr3:50104247-50104308 | -10.19 | -0.1960 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000269352 | ENST00000599259 | exon_skip_52671 | chr10:97461495-97461622 | -22.48 | -0.1873 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000269352 | ENSG00000111605 | CPSF6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,LIHC,OV |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000216465 | -0.1027 | 1 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000554279 | -0.4860 | 558 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000557639 | -0.1688 | 277 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000349555 | -0.1213 | 129 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000556627 | -0.1463 | 184 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000557053 | -0.4271 | 559 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000393734 | -0.1027 | 1 | - | LIHC | ENSG00000269352 | ENST00000593654 | GSTZ1 | ENSG00000100577 | ENST00000553586 | -0.1144 | 113 | - | LIHC | ENSG00000269352 | ENST00000593654 | ECHS1 | ENSG00000127884 | ENST00000368547 | -0.1091 | 123 | - | KIRC,LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000216465 | -0.1072 | 237 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000554279 | -0.5379 | 119 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000557639 | -0.1395 | 266 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000349555 | -0.1436 | 527 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000556627 | -0.1447 | 530 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000557053 | -0.9217 | 280 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000393734 | -0.1072 | 238 | - | LIHC | ENSG00000269352 | ENST00000601893 | GSTZ1 | ENSG00000100577 | ENST00000553586 | -0.1241 | 459 | - | LIHC | ENSG00000269352 | ENST00000601893 | ECHS1 | ENSG00000127884 | ENST00000368547 | -0.1640 | 469 | - | KIRC,LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000216465 | -0.1205 | 1 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000554279 | -0.6019 | 255 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000557639 | -0.1984 | 255 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000349555 | -0.1170 | 5 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000556627 | -0.1463 | 29 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000557053 | -1.6060 | 255 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000393734 | -0.1205 | 1 | - | LIHC | ENSG00000269352 | ENST00000599259 | GSTZ1 | ENSG00000100577 | ENST00000553586 | -0.1395 | 255 | - | LIHC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000251654 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000490504 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000483687 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000468777 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000462637 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000466072 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000482086 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | PCCB | ENSG00000114054 | ENST00000469217 | -0.2431 | 1 | - | KIRC | ENSG00000269352 | ENST00000599259 | ECHS1 | ENSG00000127884 | ENST00000368547 | -0.1231 | 1 | - | KIRC,LIHC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000269352.1 | ENST00000593654.1 | 69 | 207 | 1 | ENSG00000269352.1 | ENST00000601893.1 | 78 | 361 | 594 | ENSG00000269352.1 | ENST00000599259.1 | 119 | 360 | 716 |
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