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lncRNA: ENSG00000268912

Summary for CTD-2619J13.17

Gene summary

Gene information	Ensembl ID	ENSG00000268912
	Gene symbol	CTD-2619J13.17
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for CTD-2619J13.17

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000268912	2.312956e+02	1.348053e+00	3.257279e-01	4.138587e+00	3.490000e-05	7.528460e-04	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000268912	-3.312040e-01	6.637250e-09	KIRP	5.963764e-08
ENSG00000268912	-3.235530e-01	2.929643e-15	THCA	5.416432e-14

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lncRNA-Protein interaction for CTD-2619J13.17

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000118058	KMT2A	59.64	98.0264	Q03164	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000263001	GTF2I	53.68	92.4221	P78347	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000101126	ADNP	52.47	94.9593	Q9H2P0	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000171634	BPTF	47.14	98.1023	Q12830	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000104885	DOT1L	46.74	96.6957	Q8TEK3	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000134852	CLOCK	42.99	96.4704	O15516	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000272333	KMT2B	35.92	97.3642	Q9UMN6	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000169057	MECP2	35.86	94.8811	P51608	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000141644	MBD1	21.78	91.0582	Q9UIS9	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000123636	BAZ2B	78.53	91.3186	Q9UIF8	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000165156	ZHX1	61.64	92.8789	Q9UKY1	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000084676	NCOA1	48.45	96.8649	Q15788	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000076108	BAZ2A	47.62	96.0841	Q9UIF9	TF,RBP,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000102974	CTCF	47.07	95.5759	P49711	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000189079	ARID2	44.37	95.9527	Q68CP9	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000168769	TET2	43.21	97.2997	Q6N021	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000123636	BAZ2B	78.53	91.3776	Q9UIF8	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000125812	GZF1	75.95	95.4107	Q9H116	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000140836	ZFHX3	67.83	97.3531	Q15911	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000130254	SAFB2	64.41	96.0497	Q14151	TF,RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000102908	NFAT5	64.25	94.2493	O94916	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000174306	ZHX3	62.18	91.8164	Q9H4I2	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000165156	ZHX1	61.64	92.9678	Q9UKY1	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000118058	KMT2A	59.64	98.0471	Q03164	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000164916	FOXK1	57.78	94.2549	P85037	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000124782	RREB1	56.34	96.4996	Q92766	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000105127	AKAP8	56.28	95.966	O43823	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000181827	RFX7	54.03	96.442	Q2KHR2	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000124459	ZNF45	53.97	95.2252	Q02386	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000263001	GTF2I	53.68	92.8148	P78347	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000101126	ADNP	52.47	94.8949	Q9H2P0	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000126804	ZBTB1	52.02	93.8254	Q9Y2K1	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198538	ZNF28	51.13	94.124	P17035	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000005889	ZFX	50.2	94.6682	P17010	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000159140	SON	49.28	96.6637	P18583	TF,RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000196867	ZFP28	48.94	95.562	Q8NHY6	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000084676	NCOA1	48.45	96.8177	Q15788	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000146587	RBAK	48.4	92.1101	Q9NYW8	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000177045	SIX5	47.66	92.3761	Q8N196	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000076108	BAZ2A	47.62	96.2262	Q9UIF9	TF,RBP,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000114439	BBX	47.35	96.6597	Q8WY36	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000099326	MZF1	47.3	95.3715	P28698	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000171634	BPTF	47.14	98.1068	Q12830	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000102974	CTCF	47.07	95.8821	P49711	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000104885	DOT1L	46.74	96.689	Q8TEK3	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000147124	ZNF41	46.64	95.8692	P51814	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000167232	ZNF91	46.22	96.0539	Q05481	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000189079	ARID2	44.37	96.0633	Q68CP9	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000168769	TET2	43.21	97.542	Q6N021	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000134852	CLOCK	42.99	96.4821	O15516	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000196670	ZFP62	42.33	95.8802	Q8NB50	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000070476	ZXDC	41.81	93.6442	Q2QGD7	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198521	ZNF43	40.66	93.7537	P17038	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198815	FOXJ3	39.76	92.1902	Q9UPW0	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000165821	SALL2	39.33	95.9202	Q9Y467	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000188786	MTF1	38.74	94.459	Q14872	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000117000	RLF	38.08	97.3853	Q13129	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000168795	ZBTB5	37.09	95.1831	O15062	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000186272	ZNF17	36.47	94.8178	P17021	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000272333	KMT2B	35.92	97.3673	Q9UMN6	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000169057	MECP2	35.86	94.9492	P51608	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000164631	ZNF12	35.27	91.3209	P17014	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198040	ZNF84	35.08	95.8419	P51523	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000197857	ZNF44	34.87	93.6455	P15621	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000184939	ZFP90	33.33	95.2148	Q8TF47	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000170448	NFXL1	32.49	95.5942	Q6ZNB6	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000142065	ZFP14	31.4	93.8212	Q9HCL3	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000171649	ZIK1	30.53	93.9116	Q3SY52	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000180787	ZFP3	30.39	91.8594	Q96NJ6	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000181007	ZFP82	29.93	92.3935	Q8N141	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000168661	ZNF30	29.68	92.5721	P17039	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000105708	ZNF14	29.47	94.105	P17017	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000105866	SP4	28.98	92.5785	Q02446	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000120784	ZFP30	26.88	94.1009	Q9Y2G7	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000123411	IKZF4	26.86	92.8568	Q9H2S9	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000105856	HBP1	25.85	94.3379	O60381	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000118260	CREB1	25.39	90.1474	P16220	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000167182	SP2	22.12	92.7102	Q02086	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000141644	MBD1	21.78	91.2166	Q9UIS9	TF,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000132846	ZBED3	21.18	92.9213	Q96IU2	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000175691	ZNF77	20.12	93.5926	Q15935	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000256223	ZNF10	16.82	90.2314	P21506	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000167766	ZNF83	15.67	94.8929	P51522	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000146676	PURB	15.45	90.6411	Q96QR8	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000185670	ZBTB3	13.83	94.286	Q9H5J0	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000187792	ZNF70	12.12	93.9431	Q9UC06	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000185129	PURA	12.01	93.0837	Q00577	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000196152	ZNF79	11.92	94.5151	Q15937	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000278129	ZNF8	10.31	94.6188	P17098	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000095574	IKZF5	9.47	92.7918	Q9H5V7	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000186130	ZBTB6	8.89	93.4403	Q15916	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000105750	ZNF85	8.31	94.3766	Q03923	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000175395	ZNF25	7.6	94.463	P17030	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000275111	ZNF2	5.84	94.7435	Q9BSG1	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000178177	LCORL	3.73	94.2371	Q8N3X6	TF	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198939	ZFP2	2.29	94.4017	Q6ZN57	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000145833	DDX46	67.07	93.2959	Q7L014	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000130254	SAFB2	64.41	96.0443	Q14151	TF,RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198231	DDX42	59.7	94.5908	Q86XP3	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000163510	CWC22	59.57	96.47	Q9HCG8	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000159082	SYNJ1	59.1	96.1096	O43426	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000075856	SART3	58.6	94.513	Q15020	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000125676	THOC2	58.4	96.5508	Q8NI27	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000064607	SUGP2	57.66	93.4246	Q8IX01	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000213079	SCAF8	56.34	97.0073	Q9UPN6	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000137776	SLTM	54.02	96.6403	Q9NWH9	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000003756	RBM5	53.98	94.18	P52756	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000198000	NOL8	52.36	95.9696	Q76FK4	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000163728	TTC14	52.2	94.1688	Q96N46	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000114127	XRN1	52.05	95.928	Q8IZH2	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000106344	RBM28	51.95	95.8432	Q9NW13	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000085872	CHERP	51.45	94.0743	Q8IWX8	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000159140	SON	49.28	96.6635	P18583	TF,RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000076108	BAZ2A	47.62	95.9859	Q9UIF9	TF,RBP,Epi	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000107864	CPEB3	46.03	93.2888	Q8NE35	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000123908	AGO2	40.3	92.72	Q9UKV8	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000156304	SCAF4	37.19	96.9114	O95104	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000135870	RC3H1	36.2	96.0686	Q5TC82	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000133226	SRRM1	35.97	96.9854	Q8IYB3	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000173914	RBM4B	35.64	91.2562	Q9BQ04	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000129351	ILF3	34.67	96.4099	Q12906	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000099622	CIRBP	30.42	90.217	Q14011	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000241058	NSUN6	28.73	90.1544	Q8TEA1	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000184863	RBM33	26.72	90.8483	Q96EV2	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000111605	CPSF6	24.01	95.4439	Q16630	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000111615	KRR1	20.87	90.63	Q13601	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000149532	CPSF7	17.07	95.1355	Q8N684	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000167978	SRRM2	16.23	97.6675	Q9UQ35	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000174720	LARP7	14.79	95.2648	Q4G0J3	RBP	NA
ENSG00000268912	ENST00000594816	CTD-2619J13.17	ENSG00000107164	FUBP3	5.69	94.0773	Q96I24	RBP	NA

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lncRNA-DNA interaction for CTD-2619J13.17

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTD-2619J13.17

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for CTD-2619J13.17

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000268912.1	ENST00000594816.1	54	486	322

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential