 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | IQGAP1,ACOX1,PDLIM5,A2M,CLTC,TACC1,SEC23A,MYH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000268403 | ENST00000596206 | exon_skip_430601 | chr4:82842139-82842481 | -35.70 | -0.1182 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268403 | ENST00000596206 | exon_skip_436035 | chr5:79656957-79657001 | -10.22 | -0.2377 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_41813 | chr10:68337857-68337996 | -18.64 | -0.1792 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_41841 | chr10:68756272-68756483 | -27.27 | -0.1451 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_53559 | chr10:101793912-101793998 | -11.29 | -0.1737 | OGA | ENST00000361464 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_66482 | chr11:126274926-126275021 | -15.11 | -0.1757 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_95407 | chr12:95040475-95040597 | -14.07 | -0.1407 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_290158 | chr17:42953723-42953778 | -8.04 | -0.1675 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_319223 | chr19:43526200-43526349 | -22.45 | -0.2118 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_377198 | chr3:123130479-123130616 | -20.13 | -0.1573 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_380242 | chr3:186784961-186785101 | -14.69 | -0.1130 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_382458 | chr3:38131595-38131638 | -10.46 | -0.3170 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_470226 | chr7:103307595-103307708 | -11.86 | -0.1318 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000268403 | ENST00000596206 | exon_skip_340759 | chr2:85552415-85552567 | -14.86 | -0.1004 | GGCX | ENST00000233838 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9459894-9459986 | 196.00 | -94.76 | 89 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9459655-9459744 | 185.00 | -83.61 | 86 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9459785-9459859 | 175.00 | -77.46 | 81 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9460340-9460438 | 166.00 | -74.91 | 96 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9460508-9460595 | 160.00 | -67.93 | 78 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9460626-9460701 | 160.00 | -60.48 | 80 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9460008-9460095 | 151.00 | -80.00 | 83 | NA | | ENSG00000268403 | hsa-mir-22 | ENST00000596206 | chr11:9460214-9460293 | 150.00 | -68.57 | 73 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000268403 | ENST00000596206 | PDLIM5 | ENSG00000163110 | ENST00000512274 | -0.1255 | 149 | - | CHOL | | ENSG00000268403 | ENST00000596206 | PDLIM5 | ENSG00000163110 | ENST00000509357 | -0.1083 | 87 | - | CHOL | | ENSG00000268403 | ENST00000596206 | PDLIM5 | ENSG00000163110 | ENST00000506632 | -0.1209 | 1 | - | CHOL | | ENSG00000268403 | ENST00000596206 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.3255 | 842 | - | CHOL,PRAD | | ENSG00000268403 | ENST00000596206 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.3255 | 842 | - | CHOL,PRAD | | ENSG00000268403 | ENST00000596206 | ACOX1 | ENSG00000161533 | ENST00000587927 | -0.1076 | 1 | - | CHOL | | ENSG00000268403 | ENST00000596206 | ACOX1 | ENSG00000161533 | ENST00000589301 | -0.1054 | 341 | - | CHOL | | ENSG00000268403 | ENST00000596206 | A2M | ENSG00000175899 | ENST00000318602 | -0.1470 | 324 | - | CHOL,BRCA |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268403.2 | ENST00000596206.2 | 61 | 574 | 389 |
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