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lncRNA: ENSG00000267751

Summary for BSG-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000267751
	Gene symbol	BSG-AS1
	Gene name	BSG antisense RNA 1
	HGNC	55286
	Entrez ID	105372233
	Gene type	antisense
	Synonyms	BSG-AS1\|19p13.3\|AC009005.2
	UniProtAcc

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Structure and expression level for BSG-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000267751	7.608641e+01	2.469958e+00	4.613792e-01	5.353423e+00	8.630000e-08	9.070000e-07	UP	GBM
ENSG00000267751	7.805150e+01	3.007688e+00	5.279457e-01	5.696963e+00	1.220000e-08	1.130000e-07	UP	CHOL
ENSG00000267751	6.357023e+01	1.228686e+00	1.200176e-01	1.023755e+01	1.350000e-24	2.730000e-23	UP	THCA
ENSG00000267751	9.241966e+01	2.438873e+00	3.778693e-01	6.454275e+00	1.090000e-10	2.290000e-09	UP	BLCA
ENSG00000267751	1.660204e+02	2.554448e+00	2.415112e-01	1.057693e+01	3.810000e-26	9.820000e-25	UP	UCEC
ENSG00000267751	7.727295e+01	1.498685e+00	1.695954e-01	8.836829e+00	9.850000e-19	2.120000e-17	UP	PRAD
ENSG00000267751	9.196867e+01	1.586358e+00	1.986860e-01	7.984249e+00	1.410000e-15	7.160000e-15	UP	LUSC
ENSG00000267751	1.201165e+02	2.520961e+00	1.337542e-01	1.884771e+01	3.070000e-79	1.570000e-77	UP	BRCA
ENSG00000267751	1.091149e+02	2.099785e+00	1.603107e-01	1.309822e+01	3.370000e-39	1.080000e-37	UP	LUAD
ENSG00000267751	4.961052e+01	2.196134e+00	2.125992e-01	1.032993e+01	5.160000e-25	1.570000e-23	UP	LIHC
ENSG00000267751	1.203119e+02	1.271693e+00	2.327034e-01	5.464867e+00	4.630000e-08	4.000000e-07	UP	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267751	5.722020e-01	4.014861e-05	CHOL	1.604458e-04
ENSG00000267751	4.159198e-01	3.650823e-18	LIHC	1.266379e-16
ENSG00000267751	3.387720e-01	2.907691e-16	PRAD	2.943663e-15

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lncRNA-Protein interaction for BSG-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000132780	NASP	44.68	91.4275	P49321	Epi	NA
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000167670	CHAF1A	42.86	92.3889	Q13111	Epi	NA
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000141570	CBX8	41.41	91.7367	Q9HC52	Epi	NA
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000116560	SFPQ	21.52	92.0056	P23246	RBP,Epi	NA
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000277258	PCGF2	21.4	91.6644	P35227	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267751	ENST00000589457	AC009005.2	ENSG00000125817	CENPB	7.72	91.6168	P07199	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267751	ENST00000588290	AC009005.2	ENSG00000116560	SFPQ	21.52	91.1165	P23246	RBP,Epi	NA

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lncRNA-DNA interaction for BSG-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for BSG-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CLIP4,ATP2A2,MYCBP2,N4BP1,CAB39,HEATR5B,IDS,PTPN21,DYNC1LI2,SEPTIN10,KIDINS220,CYLD,DBR1,SNX1,DPP8,MCFD2,FER,MCC,PLSCR4,TRIP12

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000267751	ENST00000588290	exon_skip_44998	chr10:110132304-110132400	-9.22	-0.1153	ADD3	ENST00000356080	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000267751	ENST00000588290	exon_skip_382356	chr3:37091466-37091538	-9.46	-0.1660	LRRFIP2	ENST00000336686	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000267751	hsa-mir-22	ENST00000589457	chr19:567642-567718	175.00	-62.28	85	NA
ENSG00000267751	hsa-mir-22	ENST00000589457	chr19:567550-567639	174.00	-64.81	93	NA
ENSG00000267751	hsa-mir-22	ENST00000589457	chr19:567345-567426	161.00	-77.21	63	NA
ENSG00000267751	hsa-mir-22	ENST00000589457	chr19:567444-567529	141.00	-79.22	86	NA
ENSG00000267751	hsa-mir-22	ENST00000588908	chr19:567574-567650	175.00	-62.28	85	NA
ENSG00000267751	hsa-mir-22	ENST00000588908	chr19:567482-567571	174.00	-64.81	93	NA
ENSG00000267751	hsa-mir-22	ENST00000588908	chr19:567253-567334	161.00	-81.91	63	NA
ENSG00000267751	hsa-mir-22	ENST00000590292	chr19:567621-567697	175.00	-62.28	85	NA
ENSG00000267751	hsa-mir-22	ENST00000590292	chr19:567529-567618	174.00	-64.81	93	NA
ENSG00000267751	hsa-mir-22	ENST00000590292	chr19:567324-567405	161.00	-81.91	63	NA
ENSG00000267751	hsa-mir-22	ENST00000590292	chr19:567423-567508	141.00	-79.22	86	NA
ENSG00000267751	hsa-mir-22	ENST00000588290	chr19:567811-567887	175.00	-62.28	85	NA
ENSG00000267751	hsa-mir-22	ENST00000588290	chr19:567719-567808	174.00	-64.81	93	NA
ENSG00000267751	hsa-mir-22	ENST00000588290	chr19:567514-567595	161.00	-77.51	63	NA
ENSG00000267751	hsa-mir-22	ENST00000588290	chr19:567411-567484	142.00	-82.53	77	NA
ENSG00000267751	hsa-mir-22	ENST00000588290	chr19:567613-567698	141.00	-79.22	86	NA

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Variants for BSG-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000267751	ENST00000589457	CLIP4	ENSG00000115295	ENST00000401617	-0.2438	172	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000589457	CLIP4	ENSG00000115295	ENST00000404424	-0.1719	464	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000589457	MCC	ENSG00000171444	ENST00000624689	-0.1181	105	-	CHOL,UCEC,PRAD,LUAD,LIHC,STAD
ENSG00000267751	ENST00000589457	MCC	ENSG00000171444	ENST00000514701	-0.1559	96	-	CHOL,UCEC,PRAD,LUAD,LIHC,STAD
ENSG00000267751	ENST00000589457	PLSCR4	ENSG00000114698	ENST00000446574	-0.1841	263	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000589457	PLSCR4	ENSG00000114698	ENST00000493382	-0.1230	300	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000589457	CYLD	ENSG00000083799	ENST00000564326	-0.1659	1	-	GBM
ENSG00000267751	ENST00000589457	CYLD	ENSG00000083799	ENST00000566206	-0.1126	171	-	GBM
ENSG00000267751	ENST00000588908	CLIP4	ENSG00000115295	ENST00000401617	-0.2438	63	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000588908	CLIP4	ENSG00000115295	ENST00000404424	-0.1719	379	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000588908	MCC	ENSG00000171444	ENST00000514701	-0.1305	56	-	CHOL,UCEC,PRAD,LUAD,LIHC,STAD
ENSG00000267751	ENST00000588908	PLSCR4	ENSG00000114698	ENST00000493382	-0.1380	205	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000588908	CYLD	ENSG00000083799	ENST00000564326	-0.1638	68	-	GBM
ENSG00000267751	ENST00000588908	CYLD	ENSG00000083799	ENST00000566206	-0.1182	1	-	GBM
ENSG00000267751	ENST00000588908	MYCBP2	ENSG00000005810	ENST00000466564	-0.1945	520	-	GBM,BRCA
ENSG00000267751	ENST00000590292	CLIP4	ENSG00000115295	ENST00000401617	-0.2438	61	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000590292	CLIP4	ENSG00000115295	ENST00000404424	-0.1719	353	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000590292	MCC	ENSG00000171444	ENST00000514701	-0.1326	54	-	CHOL,UCEC,PRAD,LUAD,LIHC,STAD
ENSG00000267751	ENST00000590292	IDS	ENSG00000010404	ENST00000428056	-0.1008	1	-	GBM,UCEC
ENSG00000267751	ENST00000590292	PLSCR4	ENSG00000114698	ENST00000446574	-0.1841	152	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000590292	PLSCR4	ENSG00000114698	ENST00000493382	-0.1230	189	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000590292	CYLD	ENSG00000083799	ENST00000566206	-0.1182	1	-	GBM
ENSG00000267751	ENST00000590292	MYCBP2	ENSG00000005810	ENST00000466564	-0.1378	67	-	GBM,BRCA
ENSG00000267751	ENST00000588290	CLIP4	ENSG00000115295	ENST00000401617	-0.3869	1	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000588290	CLIP4	ENSG00000115295	ENST00000404424	-0.6917	51	-	GBM,BLCA,UCEC,PRAD,BRCA,STAD
ENSG00000267751	ENST00000588290	MCC	ENSG00000171444	ENST00000514701	-0.1326	136	-	CHOL,UCEC,PRAD,LUAD,LIHC,STAD
ENSG00000267751	ENST00000588290	PLSCR4	ENSG00000114698	ENST00000446574	-0.1841	234	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000588290	PLSCR4	ENSG00000114698	ENST00000493382	-0.1291	83	-	CHOL,THCA,BLCA,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000267751	ENST00000588290	CYLD	ENSG00000083799	ENST00000569418	-0.1167	1	-	GBM
ENSG00000267751	ENST00000588290	CYLD	ENSG00000083799	ENST00000564326	-0.1167	1	-	GBM
ENSG00000267751	ENST00000588290	CYLD	ENSG00000083799	ENST00000566206	-0.1522	95	-	GBM
ENSG00000267751	ENST00000588290	CYLD	ENSG00000083799	ENST00000398568	-0.1167	1	-	GBM
ENSG00000267751	ENST00000588290	CYLD	ENSG00000083799	ENST00000568704	-0.1167	1	-	GBM
ENSG00000267751	ENST00000588290	MYCBP2	ENSG00000005810	ENST00000466564	-0.1378	149	-	GBM,BRCA

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000267751	BSG-AS1,hsa-mir-22,ZNF48	CESC,CHOL,MESO,THYM,LIHC
ENSG00000267751	BSG-AS1,hsa-mir-22,DHX30	CESC,CHOL,MESO,THYM,LIHC
ENSG00000267751	BSG-AS1,hsa-mir-22,EHMT2	CESC,CHOL,MESO,THYM,LIHC
ENSG00000267751	BSG-AS1,hsa-mir-22,MYL6B	CESC,CHOL,MESO,THYM,LIHC
ENSG00000267751	BSG-AS1,hsa-mir-22,CEP131	CESC,CHOL,MESO,THYM,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267751.4	ENST00000589457.1	136	442	849
ENSG00000267751.4	ENST00000588908.4	212	82	717
ENSG00000267751.4	ENST00000590292.4	203	6	614
ENSG00000267751.4	ENST00000588290.2	171	4	516

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential