lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | LRTOMT,CTNNBIP1,PLCH1,TNK1,TGIF1,LSM5,C1orf210,PSMG2,TMEM254,PRDX1,PRKACB,BCL2,CEP76,ERBB2,ABHD10,AFG3L2,PRPSAP2,KIF1C,KLC4,CD24,ATP8B1,NDC80,LGR4,POLD2,CYB5A,METTL4,SMAD4,CBX7,STMP1,OVOL2,FOXC1,FAM210A,ECI2,SLC25A23,PPP4R1,COBL,VAPA,OSBPL1A,PLCD1,FAXDC2,COQ7,ASRGL1,TNS1,H2AZ2,SPATA6,CA2,MPPE1,PBLD,RALBP1,RFC4,VPS4B,LARGE2,TMEM125,STON2,PPP1R13B,RBM47,FGFR2,THOC1,HNF1B,TTC22,KCTD1,PTPN2 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | OVOL2,SHROOM3,MANBAL,ELAC1,CYB5A,TNS1,TGIF1 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | LIMK1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000267480 | ENSG00000079308 | TNS1 | BLCA,KICH,KIRC,SARC,THCA | | BLCA | ENSG00000267480 | ENSG00000100307 | CBX7 | BLCA,KIRC,READ,SARC,UCS | | BLCA,READ | ENSG00000267480 | ENSG00000125648 | SLC25A23 | BLCA,COAD,KIRC,SARC,THCA | | BLCA,COAD | ENSG00000267480 | ENSG00000141447 | OSBPL1A | BLCA,COAD,KIRC,READ,THCA | | BLCA,COAD,READ | ENSG00000267480 | ENSG00000170271 | FAXDC2 | BLCA,KIRC,READ,SARC,THCA | | BLCA,READ,THCA | ENSG00000267480 | ENSG00000006555 | TTC22 | BRCA,CHOL,COAD,KICH,STAD | | COAD | ENSG00000267480 | ENSG00000114805 | PLCH1 | BRCA,KIRP,PAAD,READ,THCA,UCS | | THCA | ENSG00000267480 | ENSG00000101558 | VAPA | CHOL,COAD,ESCA,HNSC,KICH,LUAD,LUSC,READ | | READ | ENSG00000267480 | ENSG00000104267 | CA2 | CHOL,COAD,READ,SKCM,UCEC | | COAD,READ | ENSG00000267480 | ENSG00000066468 | FGFR2 | COAD,PAAD,READ,THCA,UCS | | COAD,READ,THCA | ENSG00000267480 | ENSG00000081923 | ATP8B1 | COAD,KICH,PAAD,READ,SARC | | COAD,READ | ENSG00000267480 | ENSG00000108187 | PBLD | COAD,KICH,KIRC,PAAD,READ | | COAD,READ | ENSG00000267480 | ENSG00000119541 | VPS4B | COAD,KICH,KIRC,LAML,READ | | COAD,READ | ENSG00000267480 | ENSG00000142875 | PRKACB | COAD,KIRP,READ,SARC,THCA | | COAD,READ | ENSG00000267480 | ENSG00000154889 | MPPE1 | COAD,HNSC,KICH,KIRC,READ,SARC,STAD,THCA,UCS | | COAD,READ | ENSG00000267480 | ENSG00000171791 | BCL2 | COAD,KIRC,KIRP,READ,THCA,UCS | | COAD,READ,THCA | ENSG00000267480 | ENSG00000187091 | PLCD1 | COAD,KICH,KIRP,READ,SKCM | | COAD,READ | ENSG00000267480 | ENSG00000198721 | ECI2 | COAD,KICH,KIRC,READ,THCA | | COAD,READ | ENSG00000267480 | ENSG00000205213 | LGR4 | COAD,KICH,KIRC,READ,UCS | | COAD,READ |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000267480 | ENST00000587619 | LIMK1 | ENSG00000106683 | ENST00000538333 | -0.1480 | 363 | THCA,READ | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000267480.1 | ENST00000587619.1 | 65 | 19 | 216 |
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