lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | S100A6,EMP3,GPX1,HSPB1,DUSP23,BLOC1S1,RRAS,LST1,LGALS1,CD63 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000267309 | ENST00000592087 | HSPB1 | ENSG00000106211 | ENST00000248553 | -0.1539 | 470 | GBM | - | ENSG00000267309 | ENST00000592087 | HSPB1 | ENSG00000106211 | ENST00000429938 | -0.1539 | 470 | GBM | - | ENSG00000267309 | ENST00000592087 | RRAS | ENSG00000126458 | ENST00000246792 | -0.1037 | 899 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000376110 | -0.2151 | 341 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000339530 | -0.1226 | 439 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000211921 | -0.1226 | 439 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000376092 | -0.3217 | 1329 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000490742 | -0.3217 | 1315 | GBM | - | ENSG00000267309 | ENST00000592087 | LST1 | ENSG00000204482 | ENST00000464044 | -0.1192 | 250 | GBM | - | ENSG00000267309 | ENST00000592087 | LGALS1 | ENSG00000100097 | ENST00000215909 | -0.3053 | 84 | GBM | - | ENSG00000267309 | ENST00000592087 | LGALS1 | ENSG00000100097 | ENST00000454173 | -0.1393 | 1190 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000548898 | -0.1183 | 1007 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000420846 | -0.1287 | 1245 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000552067 | -0.1731 | 1245 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000548160 | -0.1692 | 1245 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000546939 | -0.1692 | 1245 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000552692 | -0.1692 | 1245 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000549117 | -0.1491 | 1321 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000257857 | -0.1491 | 1321 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000552754 | -0.8867 | 464 | GBM | - | ENSG00000267309 | ENST00000592087 | CD63 | ENSG00000135404 | ENST00000550776 | -0.8867 | 464 | GBM | - | ENSG00000267309 | ENST00000592087 | EMP3 | ENSG00000142227 | ENST00000270221 | -0.2508 | 501 | GBM | - | ENSG00000267309 | ENST00000592087 | EMP3 | ENSG00000142227 | ENST00000596315 | -0.2508 | 501 | GBM | - | ENSG00000267309 | ENST00000592087 | EMP3 | ENSG00000142227 | ENST00000599255 | -0.1135 | 172 | GBM | - | ENSG00000267309 | ENST00000592087 | EMP3 | ENSG00000142227 | ENST00000597279 | -0.2508 | 501 | GBM | - | ENSG00000267309 | ENST00000592087 | S100A6 | ENSG00000197956 | ENST00000496817 | -0.2039 | 442 | GBM | - | ENSG00000267309 | ENST00000592087 | S100A6 | ENSG00000197956 | ENST00000368719 | -0.2039 | 442 | GBM | - | ENSG00000267309 | ENST00000592087 | S100A6 | ENSG00000197956 | ENST00000368720 | -0.2039 | 442 | GBM | - | ENSG00000267309 | ENST00000592087 | GPX1 | ENSG00000233276 | ENST00000419783 | -0.1171 | 1164 | GBM | - | ENSG00000267309 | ENST00000592087 | GPX1 | ENSG00000233276 | ENST00000620890 | -0.1165 | 1168 | GBM | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000267309.1 | ENST00000592087.1 | 63 | 239 | 48 |
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