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lncRNA: ENSG00000267128

Summary for RNF157-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000267128
	Gene symbol	RNF157-AS1
	Gene name	RNF157 antisense RNA 1
	HGNC	44127
	Entrez ID	100507218
	Gene type	antisense
	Synonyms	17q25.1\|RP11-449J21.5\|RNF157-AS1
	UniProtAcc

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Structure and expression level for RNF157-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000267128	1.910927e+02	1.202289e+00	3.684949e-01	3.262701e+00	1.103559e-03	4.110468e-03	UP	GBM
ENSG00000267128	9.322895e+01	3.814533e+00	4.707811e-01	8.102563e+00	5.380000e-16	1.550000e-14	UP	CHOL
ENSG00000267128	1.711847e+02	-1.070324e+00	2.085580e-01	-5.132020e+00	2.870000e-07	1.160000e-06	DOWN	THCA
ENSG00000267128	1.092062e+02	1.162317e+00	1.643091e-01	7.073967e+00	1.510000e-12	8.700000e-12	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000267128	4.411760e-01	2.417257e-03	CHOL	3.535501e-03
ENSG00000267128	-3.001422e-01	3.016742e-13	THCA	2.635505e-12

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lncRNA-Protein interaction for RNF157-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000109118	PHF12	52.11	90.0821	Q96QT6	Epi	NA
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000137337	MDC1	40.85	95.6125	Q14676	Epi	NA
ENSG00000267128	ENST00000592748	RP11-449J21.5	ENSG00000137337	MDC1	27.54	90.5998	Q14676	Epi	NA
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000147130	ZMYM3	50.2	92.2775	Q14202	Epi	NA
ENSG00000267128	ENST00000590137	RP11-449J21.5	ENSG00000147130	ZMYM3	37.89	91.0605	Q14202	Epi	NA
ENSG00000267128	ENST00000592748	RP11-449J21.5	ENSG00000147130	ZMYM3	33.41	90.6641	Q14202	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000100105	PATZ1	46.22	91.5575	Q9HBE1	TF	NA
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000198040	ZNF84	32.0	92.7608	P51523	TF	ChIP-seq
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000166432	ZMAT1	23.73	94.7735	Q5H9K5	TF	NA
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000256223	ZNF10	11.06	91.6829	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000267128	ENST00000586627	RP11-449J21.5	ENSG00000124193	SRSF6	15.6	93.5259	Q13247	RBP	NA

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lncRNA-DNA interaction for RNF157-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LRRC14,C6orf89,MORN2,PYROXD2,EPOR,DNALI1,IFT22,TEKT2,CIRBP,MDC1,DYNC2LI1,IQCE,C1orf56,TTC31,NEK11,ZC3H10,BBOF1,ZNF2,KAT7,PRTFDC1,UBTF,ICA1,TRIM39,ODAD4,MKS1,RP11-523H20.5,KIAA0895L,SPIN3,NME5,OSCP1,IFT88,BIVM,DCAF8,TMED4,SLX4IP,C20orf96,BCL7A,TTC30B,WDR5B,INCA1,RECQL5,CCDC40,TMEM175,LRRC75B,C2orf42,PHF12,IFT140,G6PC3,COQ4,IFT74,CSNK1D,GKAP1,CUEDC1,POGZ,CDK20,C19orf44,IQCD,TMCO4,RBM4B,PHC1,ECHDC2,ANAPC2,RFX2,ZBTB3,SPATA6,NCOA5,TBCK,ENDOV,AAAS,BBIP1,POLI,TTC30A,UBN2,METTL23,CTC1,C17orf75,SPHK2,SYNE4,SLC38A10,CCDC149,RABL2A,SBK1,PATZ1,ELMOD3,PCED1A,SGSH,SLC25A29,C9orf116,IFT172,ARVCF,CETN2,ABHD11,CBX1,HEXIM2,CEP290,RAB17,RGL3,ANKRD54,C17orf97,TADA2A,POMT2,ZBED8,DENND6B,NEK8,CNNM3,DDX51,DDX31,STK36,SALL2,TSEN54,ZMAT1,LRRC37B,CCDC191,MARVELD2,ACP6,ZMYM3,PAN2,APPBP2,LRTOMT,ARHGAP39,VSIG10,C2orf68,SAYSD1,SMARCD1,SPATA24,ZNF862,DTX3,ARSD,DUSP28,MINDY1,SAP30BP,ARHGAP33,BCDIN3D,COA5,GGT7,HEXD,ZNF84,GAS8,WDR35,C14orf93,BBS4,CCDC24,SEPHS1,C17orf80,B9D1,NEURL4,EXOC7,PCBD2,KIF12,RSAD1,ZFP3,PAX8,B9D2,RSPH1,UNC119B,ASB8,WBP1,CCDC57,RABL2B,LRRC45,RWDD2A,IQCC,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RNF157-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RNF157-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000267128	ENSG00000003147	ICA1	CESC,CHOL,KIRP,UCEC,UCS	CHOL
ENSG00000267128	ENSG00000004777	ARHGAP33	CESC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000006756	ARSD	CESC,CHOL,GBM,UCEC,UCS	GBM
ENSG00000267128	ENSG00000099256	PRTFDC1	CESC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000106012	IQCE	CESC,CHOL,GBM,KIRP,THCA	CHOL
ENSG00000267128	ENSG00000106077	ABHD11	CESC,CHOL,GBM,KIRP,UCS	CHOL
ENSG00000267128	ENSG00000111752	PHC1	CESC,CHOL,KIRP,LGG,PAAD	CHOL
ENSG00000267128	ENSG00000114670	NEK11	CESC,CHOL,LUAD,OV,THCA	CHOL
ENSG00000267128	ENSG00000116885	OSCP1	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000118965	WDR35	CESC,CHOL,GBM,KIRP,PAAD	CHOL
ENSG00000267128	ENSG00000123810	B9D2	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000128581	IFT22	CESC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000132122	SPATA6	CESC,CHOL,GBM,KIRP,THCA	GBM
ENSG00000267128	ENSG00000136883	KIF12	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL	THCA
ENSG00000267128	ENSG00000138002	IFT172	CESC,CHOL,GBM,KIRP,LUAD,THCA,UCEC,UCS	CHOL
ENSG00000267128	ENSG00000138036	DYNC2LI1	CESC,CHOL,GBM,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000141013	GAS8	CESC,CHOL,GBM,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000144134	RABL2A	CESC,CHOL,KIRP,LUAD,UCS	CHOL
ENSG00000267128	ENSG00000147400	CETN2	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000147799	ARHGAP39	CESC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000159239	RP11-523H20.5	CESC,CHOL,KIRP,LUAD,OV,PAAD,UCEC,UCS	CHOL
ENSG00000267128	ENSG00000160051	IQCC	CESC,CHOL,KIRP,LUAD,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000160188	RSPH1	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000160345	C9orf116	CESC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000162542	TMCO4	CESC,GBM,LUAD,THCA,UCS	GBM
ENSG00000267128	ENSG00000162836	ACP6	CESC,CHOL,GBM,KIRP,UCS	GBM
ENSG00000267128	ENSG00000163482	STK36	CESC,CHOL,GBM,KIRP,LUAD,THCA,UCEC,UCS	CHOL,GBM
ENSG00000267128	ENSG00000163879	DNALI1	CESC,CHOL,KIRP,LUAD,OV,PAAD,THCA,UCS		THCA
ENSG00000267128	ENSG00000166578	IQCD	CESC,CHOL,KIRP,PAAD,UCS	CHOL
ENSG00000267128	ENSG00000176834	VSIG10	CESC,CHOL,GBM,KIRP,LGG	CHOL
ENSG00000267128	ENSG00000180891	CUEDC1	CESC,CHOL,KIRP,LUAD,PAAD,UCS	CHOL
ENSG00000267128	ENSG00000187535	IFT140	CESC,CHOL,GBM,KIRP,THCA,UCS	CHOL
ENSG00000267128	ENSG00000188322	SBK1	CESC,CHOL,KIRP,LUAD,THCA	CHOL,LUAD
ENSG00000267128	ENSG00000196476	C20orf96	CESC,CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000196659	TTC30B	CESC,CHOL,GBM,KIRP,LUAD,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000197119	SLC25A29	CESC,CHOL,KIRP,LUAD,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000197557	TTC30A	CESC,CHOL,GBM,PAAD,THCA,UCS		THCA
ENSG00000267128	ENSG00000205517	RGL3	CESC,CHOL,GBM,KIRP,LUAD,PAAD,UCS	CHOL
ENSG00000267128	ENSG00000205593	DENND6B	CESC,CHOL,KIRP,PAAD,UCS	CHOL
ENSG00000267128	ENSG00000221886	ZBED8	CESC,CHOL,LGG,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000009830	POMT2	CHOL,KIRP,LUAD,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000066117	SMARCD1	CHOL,KIRP,LGG,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000108468	CBX1	CHOL,KIRP,LUAD,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000110987	BCL7A	CHOL,KIRP,LGG,LUAD,PAAD	CHOL
ENSG00000267128	ENSG00000112981	NME5	CHOL,KIRP,PAAD,THCA,UCS	CHOL
ENSG00000267128	ENSG00000141519	CCDC40	CHOL,KIRP,LUAD,OV,UCS	CHOL
ENSG00000267128	ENSG00000175970	UNC119B	CHOL,GBM,KIRP,PAAD,THCA	CHOL
ENSG00000267128	ENSG00000182173	TSEN54	CHOL,KIRP,LUAD,PAAD,UCS	CHOL
ENSG00000267128	ENSG00000185158	LRRC37B	CHOL,KIRP,LGG,LUAD,PAAD	CHOL
ENSG00000267128	ENSG00000198707	CEP290	CHOL,KIRP,LGG,PAAD,THCA	CHOL

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000267128.1	ENST00000590137.1	147	387	830
ENSG00000267128.1	ENST00000585542.1	88	973	1239
ENSG00000267128.1	ENST00000586627.1	88	151	417
ENSG00000267128.1	ENST00000586661.1	88	587	853
ENSG00000267128.1	ENST00000592748.1	47	467	324

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential