 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF22,KLF9,JDP2,HLX,KLF6,HIC1,KLF2,TBX2,ETS1,RBMS3,ZEB2,MEOX2,MEF2C,BCL6B,FLI1,SOX7,HEYL,QKI,ERG | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF22,RBMS3,JUND,MSX1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | GRHL2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000267107 | ENST00000595063 | exon_skip_21628 | chr1:9756480-9756510 | -4.93 | -0.7043 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_43507 | chr10:84499874-84499959 | -11.89 | -0.1802 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000267107 | ENST00000595063 | exon_skip_287874 | chr17:29085603-29085648 | -6.73 | -0.4807 | MYO18A | ENST00000527372 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_436488 | chr5:96726793-96726859 | -7.60 | -0.1490 | CAST | ENST00000341926,ENST00000395813 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000267107 | ENST00000595063 | exon_skip_48713 | chr10:34336198-34336243 | -4.74 | -0.2633 | PARD3 | ENST00000374789 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_325891 | chr2:62987930-62988038 | -9.53 | -0.1121 | EHBP1 | ENST00000263991 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_434332 | chr5:34813573-34813660 | -8.60 | -0.1229 | RAI14 | ENST00000265109,ENST00000428746,ENST00000503673 | In-frame | | ENSG00000267107 | ENST00000598215 | exon_skip_435063 | chr5:66075023-66075230 | -15.58 | -0.1146 | ERBIN | ENST00000284037 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_499771 | chr9:128592982-128593042 | -8.38 | -0.2394 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_44998 | chr10:110132304-110132400 | -8.65 | -0.1765 | ADD3 | ENST00000356080 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_384879 | chr3:52554723-52554879 | -18.28 | -0.1385 | PBRM1 | ENST00000296302 | In-frame | | ENSG00000267107 | ENST00000599801 | exon_skip_430601 | chr4:82842139-82842481 | -23.22 | -0.1037 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame | | ENSG00000267107 | ENST00000595063 | exon_skip_456460 | chr6:17771113-17771218 | -14.14 | -0.1554 | KIF13A | ENST00000259711 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000267107 | ENSG00000148516 | ZEB1 | ENSG00000144642 | RBMS3 | 5 | BRCA,KIRC,LUSC,PAAD,STAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000267107.5 | ENST00000588495.4 | 69 | 84 | 293 | | ENSG00000267107.5 | ENST00000599801.4 | 102 | 359 | 51 | | ENSG00000267107.5 | ENST00000595837.1 | 56 | 159 | 329 | | ENSG00000267107.5 | ENST00000594315.1 | 64 | 885 | 1079 | | ENSG00000267107.5 | ENST00000597702.1 | 118 | 10 | 366 | | ENSG00000267107.5 | ENST00000598215.1 | 79 | 9 | 248 | | ENSG00000267107.5 | ENST00000595063.1 | 68 | 7 | 213 |
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