 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CHTOP,LSM5,SOX12,PHF1,RBM6,SLIRP,HMGN3,EIF3G,THYN1,KHDC1,RBM48,DEAF1,E2F1,DDX49,GLI4,THAP4,CENPT,GMEB2,MYPOP,HSF4,THOC6,RBM42,RBM5,IRF3,CIRBP,MRM1,SUGP1,DDX56,THAP8,LSM2,NFYB,ZNF44,MZF1,ZNF48,NRF1,RBM23,RBM4B,PIN1,THOC5,CREB3,TRUB2,REXO4,RXRB,TIGD1,RBM10,NRL,RNPS1,ERAL1,DDX51,RBM8A,ZBTB3,MBD3,GZF1,RRP7A,PCBP4,SMYD3,THAP3,CWC15,ZNF77,SURF6,NAIF1,APEX1,HINFP,XPA,FIZ1,PPIE,USF2,SF3B6,ZMAT1,NELFE,ZNF83,RALY,USF1,CXXC1,ZNF3,NR1H2,SNRPA,ZNF34,NXF1,SAFB2,PATZ1,LSM3,ZNF18 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | CWC15,THOC5,ZNF48,RRP7A,MZF1,EIF3G,LSM2,ZNF18,E4F1,THAP4,CXXC1,ZMAT1,THAP7,RNPS1,SRSF5,ZNF3,ZNF83,RBM42,DHX30,RBM6,SMYD3,THAP3,CIRBP,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ELF1,AGFG1,ATF1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000267100 | ENST00000591501 | exon_skip_349689 | chr20:25221231-25221333 | -13.20 | -0.1650 | ENTPD6 | ENST00000376652 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_421737 | chr4:3428557-3428711 | -14.65 | -0.1191 | RGS12 | ENST00000336727,ENST00000344733 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000267100 | ENST00000591501 | exon_skip_83404 | chr12:53465931-53465973 | -15.38 | -0.4047 | PCBP2 | ENST00000439930 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_148110 | chr17:4892401-4892512 | -20.92 | -0.2012 | MINK1 | ENST00000355280 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_501752 | chr9:136992924-136992974 | -13.01 | -0.4337 | PAXX | ENST00000371620 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_382458 | chr3:38131595-38131638 | -8.83 | -0.4906 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_16568 | chr1:201989382-201989531 | -17.05 | -0.1160 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_81540 | chr12:42384939-42384996 | -12.23 | -0.3397 | PPHLN1 | ENST00000395568 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_131398 | chr15:101286213-101286293 | -14.54 | -0.2384 | SNRPA1 | ENST00000254193 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_324294 | chr2:27774423-27774530 | -13.14 | -0.1327 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_331506 | chr2:181920596-181920662 | -11.40 | -0.2591 | ITPRID2 | ENST00000431877 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_370518 | chr22:50247691-50247776 | -14.22 | -0.2031 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_372419 | chr3:32449453-32449552 | -13.56 | -0.1507 | CMTM7 | ENST00000334983 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_466113 | chr7:48099669-48099787 | -10.57 | -0.1068 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_481821 | chr8:22067084-22067159 | -19.66 | -0.3277 | DMTN | ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_309977 | chr19:49667018-49667161 | -20.51 | -0.1566 | BCL2L12 | ENST00000246785 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_319223 | chr19:43526200-43526349 | -22.33 | -0.1758 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_493445 | chr8:143586218-143586290 | -14.02 | -0.2298 | EEF1D | ENST00000317198,ENST00000395119,ENST00000419152,ENST00000529272 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_41841 | chr10:68756272-68756483 | -23.21 | -0.1166 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_87733 | chr12:120571190-120571291 | -14.34 | -0.1576 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_95500 | chr12:96003837-96003920 | -9.15 | -0.1158 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_74009 | chr11:64773429-64773505 | -13.70 | -0.1827 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_83419 | chr12:53467804-53467843 | -8.94 | -0.3438 | PCBP2 | ENST00000439930 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_374375 | chr3:49675182-49675309 | -16.82 | -0.1699 | APEH | ENST00000296456 | Frame-shift | | ENSG00000267100 | ENST00000591501 | exon_skip_509447 | chrX:19354490-19354583 | -15.18 | -0.1807 | PDHA1 | ENST00000422285 | In-frame | | ENSG00000267100 | ENST00000591501 | exon_skip_361485 | chr21:29008239-29008307 | -12.69 | -0.1952 | RWDD2B | ENST00000493196 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652830-10652918 | 186.00 | -78.37 | 88 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10653355-10653435 | 185.00 | -72.72 | 85 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10651883-10651964 | 184.00 | -77.66 | 80 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652469-10652562 | 176.00 | -79.56 | 89 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652332-10652419 | 175.00 | -69.36 | 88 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652234-10652317 | 173.00 | -80.68 | 84 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10653011-10653092 | 171.00 | -83.58 | 85 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10653692-10653765 | 170.00 | -57.34 | 77 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652722-10652827 | 163.00 | -104.07 | 103 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10653215-10653300 | 163.00 | -83.51 | 88 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652070-10652150 | 162.00 | -82.32 | 85 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10653596-10653671 | 154.00 | -74.52 | 73 | NA | | ENSG00000267100 | hsa-mir-22 | ENST00000591501 | chr19:10652644-10652730 | 140.00 | -78.37 | 54 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10652725-10652808 | 158.00 | -78.51 | 81 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653632-10653707 | 156.00 | -61.80 | 77 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653779-10653845 | 154.00 | -51.40 | 66 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653556-10653635 | 153.00 | -64.45 | 74 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10652446-10652516 | 152.00 | -63.57 | 72 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653236-10653311 | 148.00 | -67.84 | 72 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10652275-10652345 | 147.00 | -68.97 | 67 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10651933-10652007 | 146.00 | -70.61 | 73 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10652564-10652636 | 144.00 | -75.21 | 69 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10651863-10651915 | 141.00 | -53.86 | 66 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10652505-10652575 | 141.00 | -63.12 | 69 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653032-10653099 | 140.00 | -64.77 | 69 | NA | | ENSG00000267100 | hsa-mir-146b | ENST00000591501 | chr19:10653151-10653220 | 140.00 | -54.67 | 66 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000267100 | ILF3-DT,hsa-mir-146b,PRPSAP2 | THCA,GBM,DLBC,PAAD,SARC | | ENSG00000267100 | ILF3-DT,hsa-mir-22,RXRB | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,ATAT1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,TADA2A | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,NRF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,RING1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,EHMT2 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,PHC1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,HEXIM2 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,VEZF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,PAXBP1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,CNNM3 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,HEXD | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,MBTD1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,KPNA5 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,SBK1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,RBMX | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,C14orf93 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,MKS1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,PCIF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,DET1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,ING4 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000267100 | ILF3-DT,hsa-mir-22,NSMCE4A | KICH,CESC,CHOL,LGG,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000267100.1 | ENST00000591501.1 | 35 | 334 | 227 |
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