 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MPDU1,SLC25A10,AP2S1,APEH,MRPL37,ATP6V0B,YIF1B,RPN1,TUBA1C,ENO1,AKR1A1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000267082 | ENST00000588634 | exon_skip_42594 | chr10:74111908-74112112 | -21.63 | -0.1295 | VCL | ENST00000211998 | In-frame | | ENSG00000267082 | ENST00000588634 | exon_skip_48473 | chr10:29526960-29527056 | -14.73 | -0.1865 | SVIL | ENST00000355867 | In-frame | | ENSG00000267082 | ENST00000588634 | exon_skip_335378 | chr2:237751199-237751271 | -8.23 | -0.1646 | LRRFIP1 | ENST00000392000 | In-frame | | ENSG00000267082 | ENST00000588634 | exon_skip_436488 | chr5:96726793-96726859 | -8.39 | -0.2622 | CAST | ENST00000341926,ENST00000395813 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000267082 | ENST00000588634 | exon_skip_111863 | chr14:23565815-23565892 | -12.94 | -0.2121 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_114365 | chr14:74290026-74290118 | -12.09 | -0.2049 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_370518 | chr22:50247691-50247776 | -13.95 | -0.2536 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_41813 | chr10:68337857-68337996 | -15.19 | -0.1852 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_41841 | chr10:68756272-68756483 | -22.07 | -0.1138 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_300663 | chr19:1425877-1425960 | -10.03 | -0.1824 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_374497 | chr3:49999439-49999513 | -10.07 | -0.1418 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000267082 | ENST00000588634 | exon_skip_382458 | chr3:38131595-38131638 | -10.18 | -0.3284 | ACAA1 | ENST00000333167 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000267082 | ENST00000588634 | SLC25A10 | ENSG00000183048 | ENST00000574884 | -0.1736 | 1 | BLCA,PRAD | KIRC | | ENSG00000267082 | ENST00000588634 | APEH | ENSG00000164062 | ENST00000469362 | -0.1106 | 1 | - | KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000267082.1 | ENST00000588634.1 | 61 | 196 | 11 |
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