lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CNOT4,STAU1,QKI,CDC5L,ZFX,KLF3,NAF1,RBMS1,NOP9,ZNF41,FOXJ3,SP2,CLOCK,BAZ2B,TET3,PRDM2,ZBTB4,SP3,SRRM2,PCBP1,DDX46,PUM1,NR2C2,FOXN2,RBM12,RBM18,NCOA1,PRDM4,ATF7,ZFP1,SON,PAIP1,ELF2,CSDE1,FUBP1,FOXO3,BBX,CPEB4,PATL1,ETV3,ZNF25,ADNP,FOXJ2,PUS7L,PTBP3,IREB2,TMF1,EEA1,STAT3,AGO1,ARNT,KLF7,DDX6,CTCF,BPTF,ATF2,NCOA2,DDX3X,SCAF8,G3BP2,KLF13,SMAD1,ZFP91,AGFG1,BAZ2A,LARP4,PHAX,ZBTB1,TEAD1,ASH1L,RBM43,RREB1,FOXN3,SRBD1,CNOT6,RBM23,XRN1,NFKB1,MBNL2,RBM41,SF3A1,SP1,SKI,LIN54,KMT2A,MTF1,KLF11,PPARA,SYNJ1,AQR,ATMIN,IKZF4,MEF2A,NFAT5,GTF2I,FUBP3,REST,SMAD5,HBP1,GABPA,ZEB1,ELK3,TEP1,ELF1,BACH1,ZNF28,CUX1,KLF10,CPSF2,ATF1,RLF,ADAT1,SRCAP,GLYR1,ZHX1,CWC22,CREB1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000266402 | ENST00000580828 | exon_skip_99856 | chr13:39042104-39042305 | -8.51 | -0.1309 | NHLRC3 | ENST00000379600 | In-frame | ENSG00000266402 | ENST00000580828 | exon_skip_430601 | chr4:82842139-82842481 | -15.02 | -0.1598 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_503159 | chr9:32558909-32558954 | -5.85 | -0.7312 | NDUFB6 | ENST00000379847 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000266402 | ENST00000580828 | exon_skip_3490 | chr1:28742402-28743986 | -13.75 | -0.1447 | YTHDF2 | ENST00000373812,ENST00000542507 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_6457 | chr1:52083339-52083541 | -15.04 | -0.1067 | BTF3L4 | ENST00000313334 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_43507 | chr10:84499874-84499959 | -15.59 | -0.1925 | CCSER2 | ENST00000224756 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_78771 | chr11:134248808-134248959 | -14.78 | -0.1173 | THYN1 | ENST00000341541,ENST00000392594,ENST00000392595 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_301267 | chr19:6746028-6746196 | -21.97 | -0.1664 | TRIP10 | ENST00000313244 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_371367 | chr3:9697710-9697866 | -18.36 | -0.1583 | MTMR14 | ENST00000296003 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_380242 | chr3:186784961-186785101 | -12.43 | -0.1207 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_382100 | chr3:25720013-25720191 | -17.75 | -0.1387 | NGLY1 | ENST00000280700 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_445390 | chr5:150403120-150403312 | -24.09 | -0.1506 | CD74 | ENST00000009530 | In-frame | ENSG00000266402 | ENST00000580828 | exon_skip_477565 | chr7:99459146-99459263 | -7.33 | -0.1242 | ATP5MF | ENST00000292475 | In-frame | ENSG00000266402 | ENST00000580828 | exon_skip_481699 | chr8:19824802-19824972 | -8.20 | -0.1065 | INTS10 | ENST00000397977 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_514339 | chrX:23713134-23713208 | -11.43 | -0.3008 | ACOT9 | ENST00000336430 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_29583 | chr1:114780109-114780215 | -13.38 | -0.1408 | SIKE1 | ENST00000060969 | Frame-shift | ENSG00000266402 | ENST00000580828 | exon_skip_38175 | chr1:234398381-234398553 | -7.27 | -0.4039 | TARBP1 | ENST00000040877 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_41813 | chr10:68337857-68337996 | -25.36 | -0.1865 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_87733 | chr12:120571190-120571291 | -13.04 | -0.1482 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_89597 | chr12:6672349-6672532 | -23.03 | -0.1324 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_95407 | chr12:95040475-95040597 | -12.09 | -0.1493 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_97655 | chr12:120579773-120579923 | -9.19 | -0.1010 | POP5 | ENST00000357500 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_127618 | chr15:58890280-58890461 | -17.54 | -0.1210 | SLTM | ENST00000380516 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_137309 | chr16:66558189-66558348 | -9.00 | -0.1957 | CKLF | ENST00000264001 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_137312 | chr16:66563121-66563217 | -9.02 | -0.1203 | CKLF | ENST00000264001 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_290158 | chr17:42953723-42953778 | -7.78 | -0.1556 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_319223 | chr19:43526200-43526349 | -20.76 | -0.1609 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_324294 | chr2:27774423-27774530 | -14.20 | -0.1972 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_353131 | chr20:58669290-58669453 | -24.93 | -0.1651 | STX16 | ENST00000371141 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_356108 | chr20:34740362-34743341 | -29.46 | -0.1087 | NCOA6 | ENST00000359003,ENST00000374796 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_358821 | chr20:63943652-63943669 | -5.30 | -0.8833 | UCKL1 | ENST00000354216 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_370518 | chr22:50247691-50247776 | -16.47 | -0.2256 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_374497 | chr3:49999439-49999513 | -10.05 | -0.2051 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_377198 | chr3:123130479-123130616 | -16.95 | -0.1345 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_382458 | chr3:38131595-38131638 | -8.45 | -0.3018 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_436035 | chr5:79656957-79657001 | -6.16 | -0.8800 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_442657 | chr5:74730259-74730398 | -13.33 | -0.1550 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_466137 | chr7:48103296-48103411 | -13.70 | -0.3605 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_476549 | chr7:76013741-76013887 | -16.32 | -0.1444 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000266402 | ENST00000580828 | exon_skip_511212 | chrX:71555189-71555385 | -16.19 | -0.2744 | OGT | ENST00000373719 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_29546 | chr1:114737470-114737563 | -17.40 | -0.2417 | CSDE1 | ENST00000358528,ENST00000534699 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_5818 | chr1:45568484-45568684 | -23.53 | -0.1508 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_11029 | chr1:154989559-154989707 | -16.95 | -0.1202 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_135806 | chr16:30654628-30655214 | -30.39 | -0.1117 | PRR14 | ENST00000300835,ENST00000542965 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_356468 | chr20:35280653-35280829 | -17.81 | -0.1549 | EIF6 | ENST00000374436,ENST00000374450 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_358606 | chr20:63202286-63203807 | -33.33 | -0.1488 | YTHDF1 | ENST00000370339 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_390418 | chr3:183842297-183842447 | -13.46 | -0.1043 | PARL | ENST00000317096 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_390412 | chr3:183833723-183833825 | -14.84 | -0.1878 | PARL | ENST00000317096 | In-frame | ENSG00000266402 | ENST00000582965 | exon_skip_476535 | chr7:76000889-76001002 | -15.04 | -0.1653 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_52895 | chr10:98431130-98431291 | -21.71 | -0.1596 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift | ENSG00000266402 | ENST00000582965 | exon_skip_99140 | chr12:132729678-132730270 | -24.41 | -0.1095 | ANKLE2 | ENST00000357997 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000266402.3 | ENST00000580828.1 | 110 | 330 | 1 |
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