lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | GLB1,TM9SF1,CTNNB1,LPCAT3,HBP1,SERPINB8,CSNK1A1,MYH9,TNFRSF1A,CAPN1,SETD7,SCARB2,RIN2,RDX,CCDC134,CYFIP1,LRP10,IQGAP1,TMCO3,CYB5R3,ACTN1,SF3A1,STK24,SLC35C1,RPN2,SEC24B,ITPRIPL2 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000264608 | ENST00000582858 | exon_skip_353131 | chr20:58669290-58669453 | -24.82 | -0.1773 | STX16 | ENST00000371141 | Frame-shift | ENSG00000264608 | ENST00000582858 | exon_skip_382458 | chr3:38131595-38131638 | -7.67 | -0.2474 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000264608 | ENST00000582858 | exon_skip_326917 | chr2:74532618-74532714 | -12.94 | -0.1559 | HTRA2 | ENST00000258080 | In-frame | ENSG00000264608 | ENST00000582858 | exon_skip_470226 | chr7:103307595-103307708 | -10.97 | -0.1261 | PMPCB | ENST00000249269 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000264608 | ENST00000582858 | ACTN1 | ENSG00000072110 | ENST00000193403 | -0.1503 | 1 | THCA | BLCA | ENSG00000264608 | ENST00000582858 | ACTN1 | ENSG00000072110 | ENST00000394419 | -0.1503 | 1 | THCA | BLCA | ENSG00000264608 | ENST00000582858 | ACTN1 | ENSG00000072110 | ENST00000438964 | -0.1503 | 1 | THCA | BLCA | ENSG00000264608 | ENST00000582858 | ACTN1 | ENSG00000072110 | ENST00000376839 | -0.1558 | 54 | THCA | BLCA | ENSG00000264608 | ENST00000582858 | ACTN1 | ENSG00000072110 | ENST00000555075 | -0.1872 | 57 | THCA | BLCA | ENSG00000264608 | ENST00000582858 | IQGAP1 | ENSG00000140575 | ENST00000560373 | -0.4013 | 111 | GBM | - | ENSG00000264608 | ENST00000582858 | LRP10 | ENSG00000197324 | ENST00000546834 | -0.1541 | 1 | GBM | - | ENSG00000264608 | ENST00000582858 | TNFRSF1A | ENSG00000067182 | ENST00000540022 | -0.1650 | 56 | GBM | - | ENSG00000264608 | ENST00000582858 | TNFRSF1A | ENSG00000067182 | ENST00000366159 | -0.2348 | 1 | GBM | - | ENSG00000264608 | ENST00000582858 | TNFRSF1A | ENSG00000067182 | ENST00000543048 | -0.1499 | 14 | GBM | - | ENSG00000264608 | ENST00000582858 | CCDC134 | ENSG00000100147 | ENST00000402061 | -0.1976 | 1 | KICH | - | ENSG00000264608 | ENST00000582858 | LPCAT3 | ENSG00000111684 | ENST00000535479 | -0.2437 | 1 | GBM,KICH | LUAD | ENSG00000264608 | ENST00000582858 | LPCAT3 | ENSG00000111684 | ENST00000261407 | -0.2437 | 1 | GBM,KICH | LUAD | ENSG00000264608 | ENST00000582858 | SERPINB8 | ENSG00000166401 | ENST00000397988 | -0.1438 | 1 | GBM | - | ENSG00000264608 | ENST00000582858 | GLB1 | ENSG00000170266 | ENST00000446732 | -0.1010 | 1 | GBM | - | ENSG00000264608 | ENST00000582858 | ITPRIPL2 | ENSG00000205730 | ENST00000381440 | -0.1808 | 1 | KICH | - | ENSG00000264608 | ENST00000582858 | RPN2 | ENSG00000118705 | ENST00000456400 | -0.3320 | 132 | GBM | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000264608.1 | ENST00000582858.1 | 129 | 746 | 1135 |
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