lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | SMCHD1,CHFR,PHF12,SUPT7L,GK5,VAMP1,ACIN1,MYO1F,MYO9B,CYTH1,AARSD1,S100PBP,GPATCH8,CCNT2,NAA25,RC3H1,GRK3,ZCCHC8,GON4L,ADPGK,PHTF2,NCKAP1L,SMG1,BIN2,WASHC4,CELF1,MKNK1,CENPJ,DMTF1,OGT,ARHGEF11,EIF4A1,CSAD,WDR33,MARCHF1,MYO5A,RBM25,INO80D,MYO19,TEFM,MAP3K2,ATG14,POLG2,CRLF3,STK36,ADAP2,STAT2,LRRC37B,AGFG1,RNF135,CLEC7A,CEPT1,KANSL1,SP110,LRIG2,EZH1,RPS6KB1,STRADA,DMXL2,MSANTD2,THOC1,RBM33,ELMOD3,DDX17,SYNJ1,PTPN2,ATAD2B | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000264456 | ENSG00000099331 | MYO9B | ESCA,KIRC,KIRP,LUAD,OV | KIRC | | ENSG00000264456 | ENSG00000139631 | CSAD | ESCA,KIRC,KIRP,LUAD,LUSC | KIRC | | ENSG00000264456 | ENSG00000184060 | ADAP2 | ESCA,KIRC,KIRP,LAML,LUAD,OV,SARC | KIRC | | ENSG00000264456 | ENSG00000185158 | LRRC37B | ESCA,KIRC,KIRP,LUAD,LUSC,OV,TGCT | KIRC | | ENSG00000264456 | ENSG00000072609 | CHFR | KIRC,KIRP,LAML,LUAD,OV | KIRC | | ENSG00000264456 | ENSG00000110934 | BIN2 | KIRC,KIRP,LAML,OV,SARC | KIRC | | ENSG00000264456 | ENSG00000123338 | NCKAP1L | KIRC,KIRP,LAML,OV,SARC | KIRC | | ENSG00000264456 | ENSG00000142347 | MYO1F | KIRC,KIRP,LAML,OV,SARC | KIRC | | ENSG00000264456 | ENSG00000145416 | MARCHF1 | KIRC,LAML,LUAD,OV,SARC | KIRC | | ENSG00000264456 | ENSG00000161960 | EIF4A1 | KIRC,KIRP,LUAD,LUSC,TGCT | KIRC | | ENSG00000264456 | ENSG00000172243 | CLEC7A | KIRC,KIRP,LAML,LUAD,OV | KIRC | | ENSG00000264456 | ENSG00000256525 | POLG2 | KIRC,KIRP,LUAD,LUSC,TGCT | KIRC | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000264456.1 | ENST00000580979.1 | 62 | 146 | 334 |
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