lncRNAfunc Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

lncRNA summary

leaf

lncRNA structure and expression level

leaf

lncRNA-Protein interaction

leaf

lncRNA-DNA interaction

leaf

lncRNA-RNA interaction

leaf

Variants in lncRNA

leaf

lncRNAs regulate the target genes through functioning as enhancers

leaf

lncRNAs regulate the target genes through recruiting transcript factors

leaf

lncRNAs regulate the alternative splicing events through interacting with splicing factor

leaf

lncRNAs regulate mRNA through targeting the 3'-UTR region

leaf

lncRNAs regulate mRNA by competing with miRNA

leaf

lncRNA coding potential

lncRNA: ENSG00000264278

Summary for ZNF236-DT

check button Gene summary

Gene informationEnsembl ID

ENSG00000264278

Gene symbol

ZNF236-DT

Gene nameZNF236 divergent transcript
HGNC

53779

Entrez ID

100131655

Gene typelincRNA
SynonymsRP11-162A12.2|ZNF236-DT|18q23
UniProtAcc

Top

Structure and expression level for ZNF236-DT

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002642783.482495e-018.249894e-04KICH1.160456e-03

Top

lncRNA-Protein interaction for ZNF236-DT

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000264278ENST00000585258RP11-162A12.2ENSG00000179886TIGD515.6691.0849Q53EQ6TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

Top

lncRNA-DNA interaction for ZNF236-DT

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for ZNF236-DT

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

Top

Variants for ZNF236-DT

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name
LncEditing_340441ENSG00000264278.1chr1876805998-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340475ENSG00000264278.1chr1876807683-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340480ENSG00000264278.1chr1876807715-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340481ENSG00000264278.1chr1876807716-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340483ENSG00000264278.1chr1876807723-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340488ENSG00000264278.1chr1876807759-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340494ENSG00000264278.1chr1876807797-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340498ENSG00000264278.1chr1876807806-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340518ENSG00000264278.1chr1876807907-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340526ENSG00000264278.1chr1876808309-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340531ENSG00000264278.1chr1876808348-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340549ENSG00000264278.1chr1876809145-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001
LncEditing_340574ENSG00000264278.1chr1876809456-lincRNARP11-162A12.2ENST00000585258.1lincRNARP11-162A12.2-001

check buttonEdited-associated DElncRNAs in cancer.
Differentially expressed gene
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange
ENSG00000264278LncEditing_340494SARCchr18_76807797_-2.092969e+001.346557e+001.571646e+005.135560e+002.813056e-073.873200e-07UP
ENSG00000264278LncEditing_340441GBMchr18_76805998_-2.722925e+002.157942e+002.980613e+002.288167e+002.212778e-022.297994e-02UP
ENSG00000264278LncEditing_340483GBMchr18_76807723_-2.771280e+002.122082e+002.596917e+002.231750e+002.563152e-022.634803e-02UP
ENSG00000264278LncEditing_340531GBMchr18_76808348_-2.517353e+002.145509e+004.336749e+002.280382e+002.258505e-022.342475e-02UP
ENSG00000264278LncEditing_340549GBMchr18_76809145_-2.623577e+001.931429e+002.263128e+005.435183e+005.474014e-081.314088e-07UP
ENSG00000264278LncEditing_340494MESOchr18_76807797_-2.136070e+001.622305e+002.519434e+002.249783e+002.446271e-022.669440e-02UP
ENSG00000264278LncEditing_340488THYMchr18_76807759_-1.718626e+001.469274e+004.421811e+002.193931e+002.824037e-022.977875e-02UP
ENSG00000264278LncEditing_340498THYMchr18_76807806_-1.870664e+001.456884e+002.772664e+002.020938e+004.328619e-024.393468e-02UP
ENSG00000264278LncEditing_340518THYMchr18_76807907_-1.765763e+001.457110e+003.607745e+002.259016e+002.388236e-022.563216e-02UP
ENSG00000264278LncEditing_340475OVchr18_76807683_-2.207368e+001.249389e+001.217871e+005.628742e+001.815288e-082.690019e-08UP
ENSG00000264278LncEditing_340480OVchr18_76807715_-2.229041e+001.269488e+001.231261e+005.432807e+005.547435e-087.926754e-08UP
ENSG00000264278LncEditing_340481OVchr18_76807716_-2.064934e+001.238340e+001.355586e+005.716261e+001.088936e-081.645483e-08UP
ENSG00000264278LncEditing_340483OVchr18_76807723_-2.088848e+001.166188e+001.189192e+007.403097e+001.330444e-133.232084e-13UP
ENSG00000264278LncEditing_340488OVchr18_76807759_-1.974638e+001.160806e+001.304697e+007.243133e+004.384361e-131.004090e-12UP
ENSG00000264278LncEditing_340494OVchr18_76807797_-2.054363e+001.265497e+001.430643e+005.357392e+008.443201e-081.189812e-07UP
ENSG00000264278LncEditing_340526OVchr18_76808309_-2.637995e+001.192558e+008.730706e-018.460285e+002.667239e-179.100284e-17UP
ENSG00000264278LncEditing_340531OVchr18_76808348_-2.676189e+001.200418e+008.645712e-018.353069e+006.651192e-172.195968e-16UP
ENSG00000264278LncEditing_340549OVchr18_76809145_-2.223231e+001.216270e+001.149169e+007.628695e+002.371425e-146.244204e-14UP
ENSG00000264278LncEditing_340574OVchr18_76809456_-1.706682e+001.302287e+002.563141e+002.340354e+001.926547e-021.966104e-02UP
ENSG00000264278LncEditing_340574STADchr18_76809456_-1.291347e+001.018950e+002.925742e+003.776728e+001.589023e-041.779110e-04UP

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value
ENSG00000264278LncEditing_340475-3.404038e-011.556915e-021.750521e-02
ENSG00000264278LncEditing_340549-3.172441e-011.351759e-021.556137e-02

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

Top

lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000264278.1ENST00000585258.114259487