lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | LSM5,PHF1,SLIRP,HMGN3,EIF3G,THYN1,DEAF1,DDX49,GLI4,CENPT,NOL3,HSF4,IRF3,JMJD6,CIRBP,SUGP1,THAP8,LSM2,LSM4,PIN1,TRUB2,CREB3,REXO4,TIGD6,RBM10,DDX51,MBD3,THAP3,CWC15,MESP1,XPA,PPIE,NELFE,DHX58,USF1,CXXC1,NSUN6,SNRPA,SAFB2,ZNF18,EIF2D | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | E4F1,LSM2,EIF3G,CIRBP,EIF2D,SRP14 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CIC,AGFG1,BAZ2A,REST,LARP4,ZEB1,RUNX1,NAF1,UHMK1,PRR12,BACH1,PHF20,FOXN3,STAT6,ELK1,CPSF6,KLF7,ADNP2,SKI,DDX3X,RBM7,CHERP | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000263004 | ENST00000576313 | exon_skip_302353 | chr19:11033766-11033865 | -15.34 | -0.1871 | SMARCA4 | ENST00000344626,ENST00000429416 | In-frame | ENSG00000263004 | ENST00000576313 | exon_skip_84780 | chr12:57720098-57720263 | -19.03 | -0.1389 | OS9 | ENST00000315970 | In-frame | ENSG00000263004 | ENST00000576313 | exon_skip_436615 | chr5:103025130-103025334 | -15.31 | -0.1101 | PAM | ENST00000438793 | In-frame | ENSG00000263004 | ENST00000576313 | exon_skip_382271 | chr3:33408689-33408797 | -10.29 | -0.1225 | UBP1 | ENST00000283628,ENST00000283629 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000263004 | ENST00000576313 | exon_skip_53559 | chr10:101793912-101793998 | -10.96 | -0.1686 | OGA | ENST00000361464 | Frame-shift | ENSG00000263004 | ENST00000576313 | exon_skip_41813 | chr10:68337857-68337996 | -16.17 | -0.1555 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000263004 | ENST00000576313 | exon_skip_131398 | chr15:101286213-101286293 | -10.39 | -0.1924 | SNRPA1 | ENST00000254193 | Frame-shift | ENSG00000263004 | ENST00000576313 | exon_skip_445390 | chr5:150403120-150403312 | -26.88 | -0.1461 | CD74 | ENST00000009530 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000263004.1 | ENST00000576871.1 | 117 | 267 | 620 | ENSG00000263004.1 | ENST00000576313.1 | 148 | 693 | 247 |
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