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lncRNA: ENSG00000262879

Summary for RP11-156P1.3

Gene summary

Gene information	Ensembl ID	ENSG00000262879
	Gene symbol	RP11-156P1.3
	Gene name
	HGNC
	Entrez ID	101927060
	Gene type	processed_transcript
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-156P1.3

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000262879	-4.613812e-01	5.349699e-06	KICH	1.224960e-05

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lncRNA-Protein interaction for RP11-156P1.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000227345	PARG	66.87	92.5939	Q86W56	Epi	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000012048	BRCA1	52.49	90.3043	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000164190	NIPBL	50.66	92.9772	Q6KC79	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000067369	TP53BP1	56.33	90.9959	Q12888	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000128908	INO80	52.54	92.6051	Q9ULG1	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000149311	ATM	51.11	94.2089	Q13315	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000024048	UBR2	47.94	92.7453	Q8IWV8	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000118058	KMT2A	47.6	91.837	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000118058	KMT2A	46.87	91.1062	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000173473	SMARCC1	46.46	91.5964	Q92922	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000175054	ATR	43.61	92.4938	Q13535	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000196367	TRRAP	43.3	93.3716	Q9Y4A5	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000253729	PRKDC	42.64	94.9984	P78527	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000085224	ATRX	41.08	91.7642	P46100	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000085224	ATRX	40.93	91.4368	P46100	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000146247	PHIP	37.98	93.6448	Q8WWQ0	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000141027	NCOR1	36.57	93.2562	O75376	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000118058	KMT2A	36.3	95.348	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000147130	ZMYM3	36.23	92.2849	Q14202	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000183337	BCOR	34.94	90.0316	Q6W2J9	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000085224	ATRX	32.97	91.2216	P46100	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000185658	BRWD1	32.57	93.8937	Q9NSI6	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000139613	SMARCC2	31.74	92.6021	Q8TAQ2	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000124177	CHD6	30.94	91.2729	Q8TD26	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000141027	NCOR1	30.36	90.7208	O75376	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000167548	KMT2D	29.24	92.5384	O14686	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000198646	NCOA6	27.55	92.5452	Q14686	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000171634	BPTF	27.07	94.8582	Q12830	TF,Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000163935	SFMBT1	26.06	90.9787	Q9UHJ3	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000167548	KMT2D	24.41	94.3182	O14686	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000067369	TP53BP1	22.36	91.6606	Q12888	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000197323	TRIM33	20.35	90.3784	Q9UPN9	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000118058	KMT2A	18.13	92.5348	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000156650	KAT6B	17.97	94.5778	Q8WYB5	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000085224	ATRX	16.73	93.9837	P46100	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000141027	NCOR1	15.21	92.0019	O75376	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000171634	BPTF	12.56	90.2627	Q12830	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000140396	NCOA2	12.41	90.054	Q15596	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000049618	ARID1B	8.3	93.1676	Q8NFD5	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000128908	INO80	64.27	91.1266	Q9ULG1	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000141027	NCOR1	45.84	90.6191	O75376	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000139613	SMARCC2	40.4	90.903	Q8TAQ2	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000167548	KMT2D	36.71	91.7648	O14686	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000156650	KAT6B	24.43	92.2635	Q8WYB5	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000123636	BAZ2B	55.45	93.5011	Q9UIF8	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000025293	PHF20	54.38	92.2462	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000571901	RP11-156P1.3	ENSG00000048649	RSF1	52.76	92.7803	Q96T23	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000054267	ARID4B	48.84	91.0487	Q4LE39	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000009954	BAZ1B	47.27	94.2659	Q9UIG0	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000100888	CHD8	45.02	90.4203	Q9HCK8	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000005483	KMT2E	44.71	91.472	Q8IZD2	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000005483	KMT2E	44.43	90.8861	Q8IZD2	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000181555	SETD2	44.01	91.9763	Q9BYW2	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000165671	NSD1	43.03	90.8653	Q96L73	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000165671	NSD1	43.03	90.8394	Q96L73	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000181555	SETD2	42.9	94.3777	Q9BYW2	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000163939	PBRM1	41.77	91.7867	Q86U86	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000117139	KDM5B	41.39	92.2608	Q9UGL1	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000108557	RAI1	40.75	91.9904	Q7Z5J4	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000055609	KMT2C	39.96	92.3379	Q8NEZ4	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000005339	CREBBP	39.7	90.5711	Q92793	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000055609	KMT2C	39.58	92.8025	Q8NEZ4	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000073614	KDM5A	39.13	92.1567	P29375	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000086758	HUWE1	39.09	91.204	Q7Z6Z7	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000086758	HUWE1	38.93	95.5194	Q7Z6Z7	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000129292	PHF20L1	38.79	90.6222	A8MW92	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000118900	UBN1	38.68	91.5876	Q9NPG3	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000032219	ARID4A	38.6	91.3999	P29374	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000092201	SUPT16H	37.95	90.7478	Q9Y5B9	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000198919	DZIP3	36.85	90.8388	Q86Y13	RBP,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000170322	NFRKB	36.2	90.6384	Q6P4R8	Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000171988	JMJD1C	35.36	92.3962	Q15652	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000164190	NIPBL	35.09	93.9362	Q6KC79	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000164190	NIPBL	35.04	90.0947	Q6KC79	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000171988	JMJD1C	34.8	93.4126	Q15652	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000165671	NSD1	34.36	92.4153	Q96L73	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000078403	MLLT10	34.26	90.8163	P55197	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000012048	BRCA1	34.2	93.3275	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000168769	TET2	33.41	90.768	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000005339	CREBBP	32.74	93.3833	Q92793	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000165288	BRWD3	32.6	94.1853	Q6RI45	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000100393	EP300	31.98	93.5095	Q09472	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000055609	KMT2C	30.44	94.2981	Q8NEZ4	Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000137337	MDC1	28.81	93.0883	Q14676	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000183495	EP400	28.11	92.1181	Q96L91	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000076108	BAZ2A	27.95	90.7002	Q9UIF9	TF,RBP,Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000126012	KDM5C	26.44	91.8082	P41229	Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000168769	TET2	26.25	92.966	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000083168	KAT6A	25.93	93.1919	Q92794	Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000083168	KAT6A	25.29	91.959	Q92794	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000025293	PHF20	22.76	90.4182	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000083168	KAT6A	21.61	91.3184	Q92794	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000048649	RSF1	19.8	90.7111	Q96T23	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000054267	ARID4B	19.25	90.3926	Q4LE39	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000009954	BAZ1B	19.05	91.6482	Q9UIG0	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000171681	ATF7IP	18.92	91.1283	Q6VMQ6	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000181555	SETD2	18.39	92.979	Q9BYW2	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000227345	PARG	17.82	90.133	Q86W56	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000165671	NSD1	17.79	92.2428	Q96L73	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000005483	KMT2E	17.73	90.2803	Q8IZD2	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000108557	RAI1	17.06	91.7908	Q7Z5J4	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000129292	PHF20L1	16.55	90.3458	A8MW92	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000005339	CREBBP	16.42	90.4237	Q92793	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000055609	KMT2C	15.09	90.1049	Q8NEZ4	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000164190	NIPBL	14.37	94.2468	Q6KC79	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000012048	BRCA1	13.98	90.2267	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000168769	TET2	13.4	90.126	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000137337	MDC1	11.4	91.6552	Q14676	Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000117713	ARID1A	8.52	92.8931	O14497	Epi	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000196199	MPHOSPH8	64.79	92.2108	Q99549	Epi	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000139613	SMARCC2	48.97	94.6925	Q8TAQ2	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000025293	PHF20	68.4	90.372	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000009954	BAZ1B	57.57	90.9211	Q9UIG0	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000164190	NIPBL	43.85	92.4542	Q6KC79	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000171988	JMJD1C	43.29	91.3146	Q15652	Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000012048	BRCA1	42.41	91.732	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000571665	RP11-156P1.3	ENSG00000078403	MLLT10	-9.62	90.4852	P55197	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000102189	EEA1	57.52	90.6224	Q15075	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000123636	BAZ2B	56.48	93.4474	Q9UIF8	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000123636	BAZ2B	55.45	93.9657	Q9UIF8	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000025293	PHF20	54.42	90.4809	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000025293	PHF20	54.38	92.8054	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000096401	CDC5L	49.17	90.5368	Q99459	TF,RBP	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000144747	TMF1	48.52	92.083	P82094	TF	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000144747	TMF1	47.99	90.7177	P82094	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000118058	KMT2A	47.6	95.0741	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000118058	KMT2A	46.87	91.299	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000102189	EEA1	44.22	91.3344	Q15075	TF	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000117139	KDM5B	41.39	91.7586	Q9UGL1	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000100207	TCF20	41.14	91.1062	Q9UGU0	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000100207	TCF20	40.98	93.0598	Q9UGU0	TF	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000115816	CEBPZ	40.47	91.6937	Q03701	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000116539	ASH1L	38.11	92.0791	Q9NR48	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000118058	KMT2A	36.3	95.4892	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000187605	TET3	35.77	90.3399	O43151	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000168769	TET2	33.41	93.1974	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000100207	TCF20	32.55	92.0528	Q9UGU0	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000171634	BPTF	32.39	90.8796	Q12830	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000084093	REST	31.26	91.3547	Q13127	TF,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000084093	REST	30.93	90.2349	Q13127	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000167232	ZNF91	29.98	92.1653	Q05481	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000198521	ZNF43	28.66	90.0553	P17038	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000117000	RLF	28.01	92.2397	Q13129	TF	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000076108	BAZ2A	27.95	91.0303	Q9UIF9	TF,RBP,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000171634	BPTF	27.07	94.9764	Q12830	TF,Epi	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000168769	TET2	26.25	93.5285	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000125812	GZF1	24.26	90.5516	Q9H116	TF	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000169554	ZEB2	24.13	90.5779	O60315	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000140836	ZFHX3	23.91	93.7225	Q15911	TF	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000140836	ZFHX3	23.04	92.0343	Q15911	TF	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000025293	PHF20	22.76	90.9133	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000102189	EEA1	22.47	91.0483	Q15075	TF	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000117000	RLF	22.41	93.9504	Q13129	TF	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000106571	GLI3	21.37	93.1796	P10071	TF	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000140836	ZFHX3	19.7	92.5611	Q15911	TF	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000118058	KMT2A	18.13	92.6803	Q03164	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000100207	TCF20	16.75	92.9661	Q9UGU0	TF	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000168769	TET2	13.4	90.3401	Q6N021	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000171634	BPTF	12.56	90.4777	Q12830	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000140396	NCOA2	12.41	90.3061	Q15596	TF,Epi	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000140836	ZFHX3	8.89	91.6791	Q15911	TF	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000105750	ZNF85	6.31	90.1065	Q03923	TF	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000256223	ZNF10	22.08	90.3686	P21506	TF	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000025293	PHF20	68.4	91.4021	Q9BVI0	TF,Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000174282	ZBTB4	68.35	90.0306	Q9P1Z0	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000012048	BRCA1	42.41	90.994	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000570314	RP11-156P1.3	ENSG00000167978	SRRM2	14.72	91.8089	Q9UQ35	RBP	NA
ENSG00000262879	ENST00000571665	RP11-156P1.3	ENSG00000196943	NOP9	1.14	90.3045	Q86U38	RBP	NA
ENSG00000262879	ENST00000574741	RP11-156P1.3	ENSG00000012048	BRCA1	52.49	90.5014	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000056097	ZFR	56.08	90.363	Q96KR1	RBP	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000056097	ZFR	55.76	90.512	Q96KR1	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000159082	SYNJ1	44.21	91.0904	O43426	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000129566	TEP1	40.15	93.4289	Q99973	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000114127	XRN1	39.69	92.6883	Q8IZH2	RBP	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000198000	NOL8	38.65	90.7975	Q76FK4	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000165934	CPSF2	36.99	90.9397	Q9P2I0	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000198919	DZIP3	36.85	91.0257	Q86Y13	RBP,Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000091009	RBM27	36.07	90.2698	Q9P2N5	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000137776	SLTM	36.05	93.3357	Q9NWH9	RBP	ENCODE
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000139746	RBM26	35.06	90.4676	Q5T8P6	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000012048	BRCA1	34.2	93.7119	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000021776	AQR	33.72	92.7372	O60306	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000125676	THOC2	33.37	92.84	Q8NI27	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000162775	RBM15	32.92	91.3694	Q96T37	RBP	ENCODE
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000198000	NOL8	30.98	91.0968	Q76FK4	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000067596	DHX8	30.73	90.401	Q14562	RBP	NA
ENSG00000262879	ENST00000575173	RP11-156P1.3	ENSG00000129317	PUS7L	30.27	90.6958	Q9H0K6	RBP	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000076108	BAZ2A	27.95	91.2281	Q9UIF9	TF,RBP,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000133226	SRRM1	16.9	92.9447	Q8IYB3	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000133226	SRRM1	15.78	93.5966	Q8IYB3	RBP	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000133226	SRRM1	14.06	91.9629	Q8IYB3	RBP	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000012048	BRCA1	13.98	90.3957	P38398	RBP,Epi	NA
ENSG00000262879	ENST00000575930	RP11-156P1.3	ENSG00000167978	SRRM2	12.56	90.5886	Q9UQ35	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000167978	SRRM2	12.16	96.9515	Q9UQ35	RBP	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000167978	SRRM2	9.86	94.9754	Q9UQ35	RBP	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000111605	CPSF6	7.96	92.0243	Q16630	RBP	NA
ENSG00000262879	ENST00000572864	RP11-156P1.3	ENSG00000100461	RBM23	5.1	92.741	Q86U06	RBP	NA
ENSG00000262879	ENST00000576938	RP11-156P1.3	ENSG00000167978	SRRM2	4.42	94.0234	Q9UQ35	RBP	NA
ENSG00000262879	ENST00000571143	RP11-156P1.3	ENSG00000149532	CPSF7	3.94	90.586	Q8N684	RBP	High-throughput data

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lncRNA-DNA interaction for RP11-156P1.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-156P1.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

GEMIN7,TMEM147,DPP7,ARPC5L,MCRIP2,CDC37,RNF126,METTL1,DDT,TOMM40,S100A11,MRPL51,NEDD8,ARF1,NUTF2,AURKAIP1,NDUFB2,RFXANK,MRPL40,CDC34,ZNHIT1,THOC6,PET100,VPS28,SMIM26,UCHL3,CIB1,CORO7,PTOV1,COX5B,ATP6V0B,BABAM1,RPS19BP1,ARPC3,NDUFS5,CHCHD10,MFSD5,ARPC4,RPL36AL,EDF1,TMSB10,SELENOW,FAM50A,CLPP,CCDC12,RNASEK,DYNLRB1,TMUB1,SERF2,SRA1,RPS27L,ATF4,ATP5ME,COX4I1,PSMD13,UBL5,TFPT,CCNQ,NDUFA2,RAB4B,SH3BGRL3,ITPA,LSM4,RPL35,GPX4,NME3,POLR2J,SNRPD2,FAM174C,H2AJ,MRPS34,CLTB,PSMB10,STXBP2,MICOS13,RNPEPL1,SLIRP,NDUFA11,SCAND1,ZNRD2,RILP,COX6B1,PFDN5,CAPNS1,WDR83OS,UQCRC1,MYDGF,PSMC3,NDUFA7,TMEM208,CNPY2,ISOC2,FAM3A,ACTB,FKBP8,CHMP4B,COPE,RHOG,TIMM10,PRELID1,MRPS12,TNIP2,RPS17,POLR2L,PPP1CA,C1orf54,UQCR10,HSD3B7,ARRB2,NDUFB9,APRT,SELENOH,PPP4C,GADD45GIP1,PSMA7,PSENEN,MRPL41,CCDC124,RBX1,COX14,GAPDH,SDF2L1,NDUFB1,NDUFA12,SQOR,R3HDM4,ATP5MK,GPX1,DYNLL1,RBM42,MRPL28,CEBPB,HMOX2,GIPC1,TIMM13,UQCR11,BCAP31,HSPB1,PLEKHJ1,ELOB,PDCD5,UQCRQ,AKR1A1,TXN2,ETHE1,HSPBP1,PSME2,SNRPB,PRDX5,GUK1,HRAS,GSTO1,PPP1R14B,MRPL54,HIGD2A,TRIR,RABAC1,AP2S1,ATP5F1E,ATP5MJ,POP7,NDUFB11,NDUFS6,BSG,ANXA2,RAB5IF,PFDN2,NDUFS3,TSPO,NDUFV2,TWF2,CLTA,SSR4,PSMA3,UBE2M,CIAO2B,PSMA2,NAA10,ATP6V1F,MANF,MGST2,OAZ1,NOP16,NCLN,GFER,NANS,DGCR6L,TRMT112,PYM1,SSNA1,SRM,ATP5PF,FKBP1A,CFL1,POLR2I,ZDHHC12,NR1H2,MRPL52,PSMG3,TMEM258,RAB13,PQBP1,MIF,ARF5,ATP5F1D,COX8A,C19orf53,COX5A,SMIM29,UBA52,EIF3K,TAF10,MPV17L2,TRAPPC2L,MRPS15,TMEM219,ATP5MF,NDUFB7,TIMM8B,BUD31,PHKG2,MRPL34,BRI3,METTL26,FAM89B,CD63,MTLN,FKBP2,GNB2,OCEL1,NDUFB8,GFUS,NDUFA3,IMP3,NOP10,NDUFA1,NDUFA6,NDUFAF3,CD151,NR2F6,CSTB,NUBP2,SEM1,SEC61B,SHARPIN

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000262879	ENST00000571665	exon_skip_3490	chr1:28742402-28743986	-34.40	-0.1421	YTHDF2	ENST00000373812,ENST00000542507	In-frame
ENSG00000262879	ENST00000571665	exon_skip_97739	chr12:121244572-121244615	-11.28	-0.3223	CAMKK2	ENST00000324774,ENST00000402834,ENST00000404169	Frame-shift
ENSG00000262879	ENST00000571665	exon_skip_430112	chr4:75653982-75654081	-12.43	-0.1498	G3BP2	ENST00000359707,ENST00000395719	In-frame
ENSG00000262879	ENST00000571665	exon_skip_90104	chr12:10709907-10710114	-36.51	-0.1952	YBX3	ENST00000228251	In-frame
ENSG00000262879	ENST00000571665	exon_skip_499791	chr9:128627924-128627942	-5.13	-0.4275	SPTAN1	ENST00000372731	In-frame
ENSG00000262879	ENST00000571665	exon_skip_430434	chr4:82356536-82356683	-14.44	-0.1402	HNRNPD	ENST00000313899	In-frame

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-156P1.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_328412	ENSG00000262879.4	chr17	47082141	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004
LncEditing_328444	ENSG00000262879.4	chr17	47082195	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004
LncEditing_328476	ENSG00000262879.4	chr17	47082245	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004
LncEditing_328480	ENSG00000262879.4	chr17	47082257	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004
LncEditing_328488	ENSG00000262879.4	chr17	47082274	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004
LncEditing_328504	ENSG00000262879.4	chr17	47082297	-	processed_transcript	RP11-156P1.3	ENST00000576938.1	lincRNA	RP11-156P1.3-004

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000262879	LncEditing_328480	GBM	chr17_47082257_-	2.298360e+00	1.906147e+00	3.704448e+00	3.026038e+00	2.477814e-03	2.909363e-03	UP
ENSG00000262879	LncEditing_328504	GBM	chr17_47082297_-	2.876514e+00	1.881384e+00	1.632581e+00	4.173739e+00	2.996404e-05	4.548012e-05	UP
ENSG00000262879	LncEditing_328444	UVM	chr17_47082195_-	2.408814e+00	1.419052e+00	1.309936e+00	3.608439e+00	3.080447e-04	5.553799e-04	UP
ENSG00000262879	LncEditing_328412	OV	chr17_47082141_-	2.306466e+00	1.834449e+00	3.027207e+00	5.590464e+00	2.264632e-08	3.329064e-08	UP
ENSG00000262879	LncEditing_328444	OV	chr17_47082195_-	2.186855e+00	1.914831e+00	5.218119e+00	3.147915e+00	1.644392e-03	1.769478e-03	UP
ENSG00000262879	LncEditing_328476	OV	chr17_47082245_-	2.474664e+00	1.863494e+00	2.443658e+00	5.264701e+00	1.404178e-07	1.937197e-07	UP
ENSG00000262879	LncEditing_328480	OV	chr17_47082257_-	2.467237e+00	1.745863e+00	2.004186e+00	7.450332e+00	9.310585e-14	2.295197e-13	UP
ENSG00000262879	LncEditing_328488	OV	chr17_47082274_-	2.593455e+00	1.838480e+00	2.014661e+00	5.746502e+00	9.110835e-09	1.385842e-08	UP
ENSG00000262879	LncEditing_328504	OV	chr17_47082297_-	2.508695e+00	1.797603e+00	2.079598e+00	6.149962e+00	7.750174e-10	1.296867e-09	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000262879	LncEditing_328480	-3.476221e-01	2.995826e-04	8.844820e-04
ENSG00000262879	LncEditing_328504	-4.156511e-01	1.540782e-04	5.572496e-04
ENSG00000262879	LncEditing_328504	-4.908135e-01	3.862087e-02	4.629798e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000262879	ENSG00000111605	CPSF6	exon_skip_430434	ENSG00000138668:chr4:82356536-82356683	HNRNPD	ENST00000313899	In-frame	UVM,UCS,THYM,PCPG,THCA
ENSG00000262879	ENSG00000021776	AQR	exon_skip_430434	ENSG00000138668:chr4:82356536-82356683	HNRNPD	ENST00000313899	In-frame	UVM,MESO,THYM,PCPG,THCA
ENSG00000262879	ENSG00000114127	XRN1	exon_skip_430434	ENSG00000138668:chr4:82356536-82356683	HNRNPD	ENST00000313899	In-frame	UVM,UCS,THYM,PCPG,THCA

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000262879.4	ENST00000575930.4	123	11	382
ENSG00000262879.4	ENST00000571901.4	63	188	0
ENSG00000262879.4	ENST00000570314.1	98	504	208
ENSG00000262879.4	ENST00000571143.1	67	36	239
ENSG00000262879.4	ENST00000575173.1	63	60	251
ENSG00000262879.4	ENST00000570379.1	134	1055	651
ENSG00000262879.4	ENST00000573341.4	75	224	0
ENSG00000262879.4	ENST00000572864.4	132	60	458
ENSG00000262879.4	ENST00000576938.1	90	369	97
ENSG00000262879.4	ENST00000574741.1	55	256	89
ENSG00000262879.4	ENST00000571665.1	144	51	485

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential