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lncRNA: ENSG00000262877

Summary for RP11-1055B8.4

Gene summary

Gene information	Ensembl ID	ENSG00000262877
	Gene symbol	RP11-1055B8.4
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-1055B8.4

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000262877	2.140829e+02	1.693216e+00	4.255910e-01	3.978506e+00	6.930000e-05	3.135140e-04	UP	CHOL
ENSG00000262877	1.458473e+02	1.622388e+00	1.967332e-01	8.246642e+00	1.630000e-16	7.980000e-16	UP	KIRC
ENSG00000262877	1.519922e+02	1.680615e+00	4.044794e-01	4.155009e+00	3.250000e-05	1.957600e-04	UP	BLCA
ENSG00000262877	2.433803e+02	1.212870e+00	1.870995e-01	6.482485e+00	9.020000e-11	6.930000e-10	UP	PRAD
ENSG00000262877	9.683561e+01	2.114799e+00	2.109107e-01	1.002699e+01	1.160000e-23	3.120000e-22	UP	LIHC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000262877	6.999799e-01	8.736236e-08	CHOL	5.870737e-06
ENSG00000262877	-4.384042e-01	1.730855e-05	KICH	3.546907e-05
ENSG00000262877	3.242637e-01	3.024277e-11	LIHC	1.321633e-10

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lncRNA-Protein interaction for RP11-1055B8.4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000104885	DOT1L	14.7	92.5799	Q8TEK3	TF,Epi	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000272333	KMT2B	11.46	92.7517	Q9UMN6	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000099326	MZF1	26.84	91.1352	P28698	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000130254	SAFB2	19.96	92.917	Q14151	TF,RBP	ENCODE
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000105127	AKAP8	18.19	90.4439	O43823	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000197857	ZNF44	16.25	90.0787	P15621	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000196670	ZFP62	15.51	92.258	Q8NB50	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000104885	DOT1L	14.7	93.0066	Q8TEK3	TF,Epi	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000196378	ZNF34	13.21	90.8002	Q8IZ26	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000198040	ZNF84	12.73	91.2286	P51523	TF	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000272333	KMT2B	11.46	93.037	Q9UMN6	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262877	ENST00000608155	RP11-1055B8.4	ENSG00000137776	SLTM	33.71	90.4118	Q9NWH9	RBP	ENCODE
ENSG00000262877	ENST00000608155	RP11-1055B8.4	ENSG00000167978	SRRM2	11.02	92.4947	Q9UQ35	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000122965	RBM19	20.85	91.499	Q9Y4C8	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000004534	RBM6	20.44	93.6456	P78332	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000130254	SAFB2	19.96	93.526	Q14151	TF,RBP	ENCODE
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000106344	RBM28	16.63	93.8352	Q9NW13	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000116350	SRSF4	16.5	91.0045	Q08170	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000137776	SLTM	15.88	93.8695	Q9NWH9	RBP	ENCODE
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000133226	SRRM1	14.98	95.0179	Q8IYB3	RBP	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000116560	SFPQ	14.13	90.5055	P23246	RBP,Epi	NA
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000129351	ILF3	11.85	91.9518	Q12906	RBP	ENCODE
ENSG00000262877	ENST00000571724	RP11-1055B8.4	ENSG00000167978	SRRM2	5.07	96.7968	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for RP11-1055B8.4

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-1055B8.4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000262877	ENST00000608155	exon_skip_1234	chr1:11658532-11658628	-19.02	-0.2348	FBXO44	ENST00000251547,ENST00000376770	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000262877	ENST00000608155	exon_skip_66482	chr11:126274926-126275021	-11.48	-0.2870	FOXRED1	ENST00000263578	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_111863	chr14:23565815-23565892	-13.87	-0.2102	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_290158	chr17:42953723-42953778	-10.03	-0.1892	AARSD1	ENST00000427569	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_377198	chr3:123130479-123130616	-13.32	-0.1233	PDIA5	ENST00000316218	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_382458	chr3:38131595-38131638	-9.41	-0.7238	ACAA1	ENST00000333167	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_4796	chr1:41007448-41007545	-11.79	-0.1474	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_7523	chr1:78660553-78660654	-12.79	-0.1487	IFI44	ENST00000370747	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_16568	chr1:201989382-201989531	-13.74	-0.1309	RNPEP	ENST00000295640	Frame-shift
ENSG00000262877	ENST00000571724	exon_skip_38175	chr1:234398381-234398553	-18.99	-0.1417	TARBP1	ENST00000040877	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_41813	chr10:68337857-68337996	-19.95	-0.1900	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000262877	ENST00000571724	exon_skip_41841	chr10:68756272-68756483	-26.71	-0.1518	CCAR1	ENST00000265872	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_53559	chr10:101793912-101793998	-10.05	-0.2233	OGA	ENST00000361464	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_62623	chr11:69079833-69079883	-11.37	-0.2773	TPCN2	ENST00000294309	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_74009	chr11:64773429-64773505	-13.09	-0.2111	SF1	ENST00000377390	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_95407	chr12:95040475-95040597	-15.34	-0.1300	NR2C1	ENST00000333003	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_114365	chr14:74290026-74290118	-14.88	-0.1815	ABCD4	ENST00000356924	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_133217	chr16:8635038-8635079	-9.37	-1.0411	METTL22	ENST00000381920	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_139422	chr16:89114338-89114487	-20.65	-0.1518	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_300663	chr19:1425877-1425960	-9.36	-0.1337	DAZAP1	ENST00000233078	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_302168	chr19:10680345-10680443	-13.17	-0.1386	ILF3	ENST00000590261	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_370518	chr22:50247691-50247776	-13.38	-0.1738	HDAC10	ENST00000216271	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_374497	chr3:49999439-49999513	-12.12	-0.2376	RBM6	ENST00000266022	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_380242	chr3:186784961-186785101	-15.98	-0.1551	EIF4A2	ENST00000323963	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_436035	chr5:79656957-79657001	-10.63	-0.4622	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_442657	chr5:74730259-74730398	-12.90	-0.1142	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_446758	chr5:178212972-178213103	-11.32	-0.1121	PHYKPL	ENST00000308158	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_462144	chr6:125298713-125298816	-11.75	-0.1865	HDDC2	ENST00000398153	Frame-shift
ENSG00000262877	ENST00000608155	exon_skip_470226	chr7:103307595-103307708	-11.71	-0.1394	PMPCB	ENST00000249269	Frame-shift
ENSG00000262877	ENST00000571724	exon_skip_327433	chr2:86125794-86125880	-7.65	-0.1821	PTCD3	ENST00000254630	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388556-81388640	195.00	-80.19	87	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388233-81388323	174.00	-100.88	89	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388134-81388216	171.00	-86.66	86	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388327-81388415	168.00	-75.72	89	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388779-81388876	168.00	-98.87	94	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81389469-81389548	167.00	-80.27	82	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388966-81389056	164.00	-87.35	92	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81389182-81389274	156.00	-95.34	88	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388870-81388958	150.00	-99.94	88	NA
ENSG00000262877	hsa-mir-22	ENST00000571724	chr17:81388449-81388533	148.00	-75.46	81	NA
ENSG00000262877	hsa-mir-22	ENST00000608155	chr17:81388322-81388407	182.00	-80.35	80	NA
ENSG00000262877	hsa-mir-22	ENST00000608155	chr17:81388200-81388288	168.00	-75.72	89	NA
ENSG00000262877	hsa-mir-22	ENST00000608155	chr17:81388132-81388196	162.00	-82.47	65	NA

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Variants for RP11-1055B8.4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000262877	ENSG00000004534	RBM6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,UVM,SKCM,PRAD,PCPG,PAAD,THCA
ENSG00000262877	ENSG00000004534	RBM6	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	UVM,SKCM,PRAD,PAAD,THCA
ENSG00000262877	ENSG00000004534	RBM6	exon_skip_442657	ENSG00000164347:chr5:74730259-74730398	GFM2	ENST00000296805,ENST00000509430	Frame-shift	UVM,SKCM,PCPG,PAAD,THCA
ENSG00000262877	ENSG00000004534	RBM6	exon_skip_470226	ENSG00000105819:chr7:103307595-103307708	PMPCB	ENST00000249269	Frame-shift	UVM,SKCM,PRAD,PCPG,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,NDE1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,CRMP1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,C1orf35	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,USP21	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,TRIM45	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,FUZ	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PRR14	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,KIAA0895L	CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,BOLA1	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,KAT2A	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,NCAPH2	CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PHC1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,EXD3	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,RBM4B	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PPOX	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,DNMT3A	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SFI1	CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,NEIL1	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,HEXIM2	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SALL2	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PAGR1	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,ING5	KICH,CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SYNGAP1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,E4F1	CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,KHDC4	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PHF10	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,MTMR11	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,GABBR1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,EDRF1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SBK1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,TSEN54	KICH,CHOL,MESO,PAAD,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,FAM228B	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,MRPL38	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,CELSR2	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,FBXO46	KICH,CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,CCDC57	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,COPS7B	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,C14orf93	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PURB	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,DGCR8	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,POGZ	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,THOC2	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,BUD13	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SSBP4	KICH,CHOL,MESO,PAAD,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,LYSMD1	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,HMGB2	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,RGL3	CHOL,MESO,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,SRRT	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,PLXNB1	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,CASC3	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,TTC13	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,WBP1	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,ANP32E	KICH,CHOL,MESO,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,WDR90	KICH,CHOL,PAAD,SARC,KIRP
ENSG00000262877	RP11-1055B8.4,hsa-mir-22,CCHCR1	KICH,CHOL,MESO,SARC,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000262877.4	ENST00000571724.3	104	330	16
ENSG00000262877.4	ENST00000608155.1	167	491	994

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential