lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | NFAT5,SON,BAZ2A,PAIP1,REST,HBP1,BBX,ELF1,BACH1,FOXN3,NOP9,G3BP1,NCBP1,SP2,SF3A1,DDX6,ADNP2,ATF1,NCOA2,GLYR1,DDX3X,PPARA | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000262089 | ENST00000573222 | exon_skip_41813 | chr10:68337857-68337996 | -18.71 | -0.1586 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_382458 | chr3:38131595-38131638 | -8.37 | -0.1993 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_41841 | chr10:68756272-68756483 | -14.73 | -0.1674 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_53559 | chr10:101793912-101793998 | -8.54 | -0.1642 | OGA | ENST00000361464 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_62623 | chr11:69079833-69079883 | -8.83 | -0.6792 | TPCN2 | ENST00000294309 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_66482 | chr11:126274926-126275021 | -11.00 | -0.1264 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_74009 | chr11:64773429-64773505 | -12.02 | -0.1821 | SF1 | ENST00000377390 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_87733 | chr12:120571190-120571291 | -11.64 | -0.1293 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_338283 | chr2:36990647-36990799 | -12.56 | -0.1005 | HEATR5B | ENST00000233099 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_370518 | chr22:50247691-50247776 | -10.66 | -0.1748 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_374375 | chr3:49675182-49675309 | -15.41 | -0.1440 | APEH | ENST00000296456 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_374497 | chr3:49999439-49999513 | -8.44 | -0.1407 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_442657 | chr5:74730259-74730398 | -12.35 | -0.1021 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_470226 | chr7:103307595-103307708 | -8.60 | -0.1387 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_476549 | chr7:76013741-76013887 | -14.32 | -0.1164 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_11029 | chr1:154989559-154989707 | -12.41 | -0.1460 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_83404 | chr12:53465931-53465973 | -8.70 | -0.4143 | PCBP2 | ENST00000439930 | In-frame | ENSG00000262089 | ENST00000573222 | exon_skip_133535 | chr16:14648387-14648592 | -21.31 | -0.1060 | BFAR | ENST00000261658 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_146683 | chr16:85780378-85780473 | -14.81 | -0.1851 | EMC8 | ENST00000253457 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_290158 | chr17:42953723-42953778 | -5.04 | -0.1326 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_340794 | chr2:85600344-85600412 | -7.84 | -0.1537 | TMEM150A | ENST00000334462,ENST00000409668 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_374581 | chr3:50110378-50110463 | -17.04 | -0.2185 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_384139 | chr3:49278813-49278902 | -10.44 | -0.1200 | USP4 | ENST00000265560 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_114365 | chr14:74290026-74290118 | -13.52 | -0.1502 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000262089 | ENST00000573222 | exon_skip_445390 | chr5:150403120-150403312 | -18.63 | -0.1129 | CD74 | ENST00000009530 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000262089 | hsa-mir-1258 | ENST00000573222 | chr17:6994758-6994831 | 151.00 | -85.33 | 63 | NA | ENSG00000262089 | hsa-mir-1258 | ENST00000573222 | chr17:6994829-6994919 | 148.00 | -102.37 | 81 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,KPNB1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,EFTUD2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,MVB12A | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SDF2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,NVL | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CDYL | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CCAR1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CLK2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SAFB2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,USP39 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,STX10 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,AATF | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SSR2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,HMGN1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,POLR2D | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,PMS1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CHTOP | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,ILF2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,TOR1AIP2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SPRTN | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SRSF1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,RGL2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CDC42SE1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,RRP36 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,TMCO1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,GTF2A2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,DDX31 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,GNPAT | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SRRT | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,VPS72 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,ORMDL1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,UBAC2 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,LRRC59 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,CCT3 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,RNF7 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,GEMIN6 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,IWS1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,BCS1L | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,TWNK | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,NOB1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,SCAMP3 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,AUP1 | KICH,CHOL,LGG,ACC,LIHC | ENSG00000262089 | RP11-589P10.5,hsa-mir-1258,RIOK2 | KICH,CHOL,LGG,ACC,LIHC |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000262089.1 | ENST00000573222.1 | 78 | 250 | 486 |
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