lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | AGAP6,PLCH1,ATAT1,GABPB2,FANCL,RALGAPA1,RBM39,LENG8,UBE2G2,MYSM1,DNMBP,IP6K2,FGD4,ARID2,MAPK8IP3,SPICE1,SUGP2,N4BP2L2,DMTF1,PIGL,ZDHHC23,ATG12,CSAD,CCDC174,INO80D,TBRG1,DCAF8,SLX4IP,ABCA5,CCNL2,BICDL2,VMP1,AP1G2,CENATAC,FAM111A,RNPC3,OGA,ANKRD10,MSANTD2,THOC1,PAN3,ANKMY1,CCDC14,ARHGAP27,DENND6A,ZMYM5,TTC14,S100PBP,CCNT2,OSBPL7,RC3H1,ZNF44,POGZ,TRIM13,ZNF91,ARHGEF38,EXOG,OGT,BCLAF3,RBM25,CAPN8,RIC8B,BBIP1,POLI,UBN2,CLK1,PRPF39,CYP3A5,EZH1,DDX17,OFD1,TMEM41B,SRRM2,SENP7,MTRF1,LCOR,RSRC2,CEP44,ENOSF1,ARGLU1,C3orf62,PAXBP1,CCNL1,WSB1,SOCS4,FNBP4,RSRP1,TMEM161B,KLC1,HSPBAP1,CHD2,TRIM52,ORC2,CDK11A,TIA1,ZNF83,GOLGA8B,YOD1,KANSL1,NSUN6,HP1BP3,CCDC191,ALPK1,GOLGA8A,ARHGAP32,NEIL1,GK5,RBM6,FAM193B,DUSP28,ARHGAP12,RBM5,NKTR,ZFC3H1,LUC7L,MBTD1,DMAC2L,PNN,LUC7L2,TTLL3,ZNF84,TMEM144,VCPKMT,EIF4A1,MAPKAPK5,HECTD4,VPS13A,TRA2B,ZNF69,PGGT1B,KHDC4,PIAS2,NR2C1,LRP5L,TSC1,EP400P1,PNISR,TEPSIN,RBM33,SIRT7,ATAD2B | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000261488 | ENSG00000046651 | OFD1 | BLCA,CHOL,COAD,ESCA,LUAD,LUSC,PAAD | CHOL | | ENSG00000261488 | ENSG00000138834 | MAPK8IP3 | BLCA,CHOL,ESCA,LUSC,THYM | CHOL | | ENSG00000261488 | ENSG00000159314 | ARHGAP27 | BLCA,CHOL,LUSC,PAAD,THYM | CHOL | | ENSG00000261488 | ENSG00000164124 | TMEM144 | BLCA,BRCA,CHOL,ESCA,PAAD | CHOL | | ENSG00000261488 | ENSG00000173681 | BCLAF3 | BLCA,BRCA,CHOL,COAD,ESCA,LUAD,PAAD | CHOL | | ENSG00000261488 | ENSG00000062716 | VMP1 | BRCA,CESC,CHOL,COAD,ESCA,LUAD,LUSC,PAAD | CESC | | ENSG00000261488 | ENSG00000132680 | KHDC4 | BRCA,CHOL,COAD,ESCA,LUAD,LUSC,PAAD,READ | CHOL | | ENSG00000261488 | ENSG00000137343 | ATAT1 | CHOL,COAD,ESCA,PAAD,READ,THYM | CHOL | | ENSG00000261488 | ENSG00000167615 | LENG8 | CHOL,ESCA,LUSC,PAAD,READ | CHOL | | ENSG00000261488 | ENSG00000114805 | PLCH1 | COAD,PAAD,READ,THCA,THYM | | THCA |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000261488.1 | ENST00000563632.1 | 69 | 170 | 379 |
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