 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TMEM38A,NDUFS3,C15orf61,TBC1D24,CYCS,MRPL34,TXNRD2,NECAB3,MKKS,ECI1,NDUFV1,UQCR11,GLRX5,UQCRC1,ILVBL,NHLRC4,NDUFA4,COQ3,MCRIP2,TMEM129 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ZYX,SFXN3,SH3GL1,BAZ1A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000261399 | ENST00000570022 | exon_skip_361434 | chr21:25997359-25997416 | -9.23 | -0.5429 | APP | ENST00000346798 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000261399 | ENSG00000010256 | UQCRC1 | DLBC,KICH,KIRC,KIRP,THCA | | KIRC | | ENSG00000261399 | ENSG00000072954 | TMEM38A | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000125863 | MKKS | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000125967 | NECAB3 | DLBC,KICH,KIRC,THCA,UCEC | KICH | | | ENSG00000261399 | ENSG00000130312 | MRPL34 | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000132423 | COQ3 | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000162065 | TBC1D24 | DLBC,KICH,KIRC,KIRP,THCA | KICH | KIRC,KIRP | | ENSG00000261399 | ENSG00000172115 | CYCS | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000172366 | MCRIP2 | DLBC,KICH,KIRC,THCA,UCEC | KICH,UCEC | | | ENSG00000261399 | ENSG00000182512 | GLRX5 | DLBC,KICH,KIRC,KIRP,THCA | | KIRC | | ENSG00000261399 | ENSG00000189043 | NDUFA4 | DLBC,KICH,KIRC,KIRP,THCA | KICH | KIRC | | ENSG00000261399 | ENSG00000189227 | C15orf61 | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000261399 | ENSG00000257108 | NHLRC4 | DLBC,KIRC,KIRP,LAML,UCEC | | KIRC,KIRP |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000261399 | ENST00000570022 | SFXN3 | ENSG00000107819 | ENST00000489434 | -0.1015 | 235 | THCA,KIRC | - | | ENSG00000261399 | ENST00000570022 | SH3GL1 | ENSG00000141985 | ENST00000417295 | -0.1026 | 1 | KIRC | - | | ENSG00000261399 | ENST00000570022 | ZYX | ENSG00000159840 | ENST00000436448 | -0.1695 | 303 | KIRP | UCEC | | ENSG00000261399 | ENST00000570022 | BAZ1A | ENSG00000198604 | ENST00000556314 | -0.2131 | 199 | KIRC,KIRP | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000261399.1 | ENST00000570022.1 | 76 | 290 | 520 |
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