lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | EVI5,MSL3,VAMP1,ATM,STK17B,RBM5,LYST,NKTR,GANC,ADPGK,TTLL3,GIT2,N4BP2L2,ANKRD44,PCSK7,MARCHF1,FBXW7,CLEC2D,ERN1,VMP1,CARD8,ABHD18 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_309286 | ENSG00000261270.1 | chr16 | 56940406 | + | sense_intronic | RP11-325K4.3 | ENST00000565861.1 | sense_intronic | RP11-325K4.3-001 | LncEditing_309287 | ENSG00000261270.1 | chr16 | 56940446 | + | sense_intronic | RP11-325K4.3 | ENST00000565861.1 | sense_intronic | RP11-325K4.3-001 | LncEditing_309291 | ENSG00000261270.1 | chr16 | 56940479 | + | sense_intronic | RP11-325K4.3 | ENST00000565861.1 | sense_intronic | RP11-325K4.3-001 | LncEditing_309295 | ENSG00000261270.1 | chr16 | 56940516 | + | sense_intronic | RP11-325K4.3 | ENST00000565861.1 | sense_intronic | RP11-325K4.3-001 | LncEditing_309305 | ENSG00000261270.1 | chr16 | 56940706 | + | sense_intronic | RP11-325K4.3 | ENST00000565861.1 | sense_intronic | RP11-325K4.3-001 |
Edited-associated DElncRNAs in cancer. |
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LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000261270 | LncEditing_309286 | KIRC | chr16_56940406_+ | 2.470353e+00 | 1.269787e+00 | 1.041524e+00 | 1.027931e+01 | 8.734737e-25 | 3.032668e-24 | UP | ENSG00000261270 | LncEditing_309291 | KIRC | chr16_56940479_+ | 2.653903e+00 | 1.245438e+00 | 9.162020e-01 | 1.086991e+01 | 1.603505e-27 | 6.303726e-27 | UP | ENSG00000261270 | LncEditing_309295 | KIRC | chr16_56940516_+ | 2.483723e+00 | 1.349004e+00 | 1.135577e+00 | 8.661747e+00 | 4.645893e-18 | 1.003459e-17 | UP | ENSG00000261270 | LncEditing_309286 | LAML | chr16_56940406_+ | 4.120094e+00 | 2.394696e+00 | 1.277409e+00 | 4.374984e+00 | 1.214412e-05 | 2.268984e-05 | UP | ENSG00000261270 | LncEditing_309286 | LUAD | chr16_56940406_+ | 2.747794e+00 | 1.358938e+00 | 9.844519e-01 | 9.039610e+00 | 1.572314e-19 | 4.449751e-19 | UP | ENSG00000261270 | LncEditing_309286 | PRAD | chr16_56940406_+ | 3.101948e+00 | 1.547247e+00 | 9.965408e-01 | 1.064576e+01 | 1.824815e-26 | 1.017421e-25 | UP | ENSG00000261270 | LncEditing_309295 | PRAD | chr16_56940516_+ | 2.964439e+00 | 1.611366e+00 | 1.137043e+00 | 9.633181e+00 | 5.790842e-22 | 2.516461e-21 | UP | ENSG00000261270 | LncEditing_309305 | PRAD | chr16_56940706_+ | 3.672488e+00 | 1.678596e+00 | 8.853450e-01 | 8.273219e+00 | 1.303901e-16 | 3.872389e-16 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000261270 | LncEditing_309286 | -4.654510e-01 | 5.644284e-07 | 4.395564e-06 | ENSG00000261270 | LncEditing_309287 | -4.464290e-01 | 2.949011e-05 | 8.268796e-05 | ENSG00000261270 | LncEditing_309291 | -4.293850e-01 | 2.857310e-06 | 1.318049e-05 | ENSG00000261270 | LncEditing_309295 | -3.111787e-01 | 1.919361e-03 | 2.541376e-03 | ENSG00000261270 | LncEditing_309305 | -4.270579e-01 | 2.211354e-03 | 2.858291e-03 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000261270 | ENSG00000062716 | VMP1 | DLBC,KIRC,LAML,LUAD,PRAD | KIRC | | ENSG00000261270 | ENSG00000069493 | CLEC2D | DLBC,KIRC,LAML,LUAD,LUSC | KIRC | | ENSG00000261270 | ENSG00000139436 | GIT2 | DLBC,KIRC,LUAD,LUSC,PRAD | KIRC | | ENSG00000261270 | ENSG00000145416 | MARCHF1 | DLBC,KIRC,LAML,LUAD,LUSC | KIRC | | ENSG00000261270 | ENSG00000214021 | TTLL3 | DLBC,KIRC,LUAD,LUSC,PRAD | KIRC | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000261270.1 | ENST00000565861.1 | 98 | 378 | 82 |
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