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lncRNA: ENSG00000260920

Summary for RP1-228H13.5

Gene summary

Gene information	Ensembl ID	ENSG00000260920
	Gene symbol	RP1-228H13.5
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_overlapping
	Synonyms
	UniProtAcc

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Structure and expression level for RP1-228H13.5

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000260920	2.120792e+02	1.659210e+00	1.024694e-01	1.619224e+01	5.720000e-59	7.770000e-57	UP	THCA
ENSG00000260920	1.732813e+02	1.437622e+00	2.256293e-01	6.371611e+00	1.870000e-10	3.710000e-09	UP	BLCA
ENSG00000260920	1.203839e+02	1.650485e+00	4.118168e-01	4.007814e+00	6.130000e-05	1.207743e-03	UP	PCPG
ENSG00000260920	1.598990e+02	1.116123e+00	8.595413e-02	1.298510e+01	1.490000e-38	2.870000e-36	UP	PRAD
ENSG00000260920	1.800124e+02	1.739018e+00	1.429829e-01	1.216242e+01	4.930000e-34	6.370000e-33	UP	LUSC
ENSG00000260920	2.554030e+02	1.197833e+00	7.661752e-02	1.563393e+01	4.280000e-55	1.070000e-53	UP	BRCA
ENSG00000260920	1.450124e+02	1.816910e+00	1.116201e-01	1.627762e+01	1.420000e-59	1.210000e-57	UP	LUAD
ENSG00000260920	9.050062e+01	1.269066e+00	1.255870e-01	1.010507e+01	5.250000e-24	9.390000e-23	UP	COAD
ENSG00000260920	9.075423e+01	1.192545e+00	2.096853e-01	5.687309e+00	1.290000e-08	2.590000e-07	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000260920	4.111318e-01	6.925446e-24	PRAD	8.500985e-22

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lncRNA-Protein interaction for RP1-228H13.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000173473	SMARCC1	116.67	91.0159	Q92922	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000077097	TOP2B	111.11	92.4067	Q02880	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000108094	CUL2	104.22	94.8835	Q13617	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000168137	SETD5	101.57	94.8686	Q9C0A6	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000036257	CUL3	99.85	94.4075	Q13618	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000132780	NASP	99.81	96.1977	P49321	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000146247	PHIP	98.98	96.8484	Q8WWQ0	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000253729	PRKDC	88.44	96.8371	P78527	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000196367	TRRAP	88.25	94.4902	Q9Y4A5	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000175054	ATR	87.5	95.8784	Q13535	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000185658	BRWD1	85.12	97.5308	Q9NSI6	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000110851	PRDM4	84.31	94.5841	Q9UKN5	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000169679	BUB1	83.67	95.5345	O43683	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000116731	PRDM2	81.22	96.344	Q13029	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000101126	ADNP	80.98	95.1439	Q9H2P0	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000131747	TOP2A	76.44	96.8475	P11388	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000156802	ATAD2	75.62	95.8111	Q6PL18	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000111752	PHC1	73.5	93.9092	P78364	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000112742	TTK	65.53	94.4244	P33981	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198646	NCOA6	60.29	95.7138	Q14686	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000010803	SCMH1	51.77	93.0219	Q96GD3	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000117625	RCOR3	11.68	91.9183	Q9P2K3	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000172273	HINFP	8.41	90.5791	Q9BQA5	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000156374	PCGF6	7.43	90.8391	Q9BYE7	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000174579	MSL2	5.49	91.5849	Q9HCI7	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000143033	MTF2	3.64	93.8497	Q9Y483	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000143815	LBR	3.29	90.7928	Q14739	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000057935	MTA3	3.26	92.3581	Q9BTC8	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198604	BAZ1A	115.35	97.0113	Q9NRL2	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000025293	PHF20	113.71	96.5376	Q9BVI0	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000127616	SMARCA4	101.99	97.0981	P51532	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000032219	ARID4A	99.81	94.6844	P29374	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000048649	RSF1	98.74	96.9995	Q96T23	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000054267	ARID4B	94.81	96.5715	Q4LE39	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000009954	BAZ1B	94.7	96.6751	Q9UIG0	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000181555	SETD2	94.48	94.8864	Q9BYW2	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000005483	KMT2E	87.47	96.7778	Q8IZD2	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000165671	NSD1	87.35	94.0931	Q96L73	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000104517	UBR5	86.8	96.7576	O95071	RBP,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000227345	PARG	86.67	95.2581	Q86W56	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000119969	HELLS	86.31	90.6867	Q9NRZ9	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000165288	BRWD3	86.0	95.5494	Q6RI45	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198730	CTR9	84.36	96.4015	Q6PD62	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000163939	PBRM1	84.31	96.3936	Q86U86	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000169375	SIN3A	83.89	95.0854	Q96ST3	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000106443	PHF14	81.8	90.4931	O94880	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000117139	KDM5B	81.07	91.8333	Q9UGL1	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000164190	NIPBL	80.41	98.181	Q6KC79	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000008083	JARID2	78.6	96.3256	Q92833	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000171988	JMJD1C	73.66	92.0975	Q15652	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000071794	HLTF	72.86	95.7738	Q14527	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000084093	REST	65.77	93.9805	Q13127	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000137337	MDC1	63.62	96.0326	Q14676	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000189079	ARID2	63.58	90.4821	Q68CP9	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000149480	MTA2	55.69	94.1649	O94776	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000102974	CTCF	54.58	94.5812	P49711	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000116560	SFPQ	50.03	93.7688	P23246	RBP,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000120071	KANSL1	45.9	90.4995	Q7Z3B3	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000171456	ASXL1	42.76	92.9969	Q8IXJ9	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000127483	HP1BP3	11.91	93.1034	Q5SSJ5	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000196591	HDAC2	11.4	92.6389	Q92769	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000134371	CDC73	11.32	90.0744	Q6P1J9	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000162521	RBBP4	9.69	94.2248	Q09028	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000177565	TBL1XR1	9.69	93.7331	Q9BZK7	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000164985	PSIP1	9.52	95.0339	O75475	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000117222	RBBP5	7.83	93.8214	Q15291	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000173894	CBX2	6.6	93.7611	Q14781	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000073584	SMARCE1	3.21	94.2179	Q969G3	Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000168283	BMI1	2.56	93.0986	P35226	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000025293	PHF20	113.71	96.2363	Q9BVI0	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000096401	CDC5L	102.23	94.9921	Q99459	TF,RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000115816	CEBPZ	89.91	92.1696	Q03701	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000135164	DMTF1	87.52	93.7019	Q9Y222	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000079432	CIC	84.46	92.7796	Q96RK0	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000110851	PRDM4	84.31	94.3536	Q9UKN5	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000181827	RFX7	82.12	95.679	Q2KHR2	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000116731	PRDM2	81.22	96.0764	Q13029	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000117139	KDM5B	81.07	91.7301	Q9UGL1	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000101126	ADNP	80.98	94.8892	Q9H2P0	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000134874	DZIP1	74.71	95.3164	Q86YF9	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000147124	ZNF41	69.88	92.4358	P51814	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000189308	LIN54	68.92	91.3802	Q6MZP7	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000084093	REST	65.77	94.4044	Q13127	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000167232	ZNF91	65.71	96.3059	Q05481	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000189079	ARID2	63.58	90.3667	Q68CP9	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198521	ZNF43	61.54	94.0092	P17038	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000117000	RLF	56.91	94.9028	Q13129	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000101544	ADNP2	55.16	93.353	Q6IQ32	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000102974	CTCF	54.58	94.3625	P49711	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000124459	ZNF45	52.51	95.5307	Q02386	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000010803	SCMH1	51.77	92.7843	Q96GD3	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198538	ZNF28	51.45	94.1542	P17035	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000188786	MTF1	50.23	94.3785	Q14872	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000198040	ZNF84	49.64	94.8286	P51523	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000168795	ZBTB5	42.21	95.4724	O15062	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000112242	E2F3	20.59	91.2128	O00716	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000184939	ZFP90	20.33	94.8368	Q8TF47	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000168661	ZNF30	19.94	93.3378	P17039	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000185252	ZNF74	15.99	94.335	Q16587	TF,RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000025156	HSF2	15.03	94.4271	Q03933	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000180346	TIGD2	12.95	92.7811	Q4W5G0	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000142065	ZFP14	12.12	91.0096	Q9HCL3	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000180035	ZNF48	12.02	93.9293	Q96MX3	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000181007	ZFP82	11.33	94.7423	Q8N141	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000120784	ZFP30	8.77	94.4949	Q9Y2G7	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000186130	ZBTB6	8.45	92.8021	Q15916	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000135457	TFCP2	7.99	90.8098	Q12800	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000184517	ZFP1	6.69	90.8516	Q6P2D0	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000173894	CBX2	6.6	93.3326	Q14781	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000184635	ZNF93	6.39	94.6594	P35789	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000256223	ZNF10	5.61	94.4781	P21506	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000278129	ZNF8	5.32	94.2672	P17098	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000162419	GMEB1	5.17	90.8222	Q9Y692	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000187815	ZFP69	4.95	92.8736	Q49AA0	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000116990	MYCL	4.89	91.7757	P12524	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000143033	MTF2	3.64	93.375	Q9Y483	TF,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000146757	ZNF92	3.64	94.4738	Q03936	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000095574	IKZF5	3.18	91.0177	Q9H5V7	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000275111	ZNF2	2.91	93.9159	Q9BSG1	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000105750	ZNF85	2.29	94.9874	Q03923	TF	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000178177	LCORL	2.27	91.0204	Q8N3X6	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000096401	CDC5L	102.23	96.0825	Q99459	TF,RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000104517	UBR5	86.8	96.7761	O95071	RBP,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000213079	SCAF8	84.23	97.7448	Q9UPN6	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000106344	RBM28	79.69	96.7527	Q9NW13	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000137776	SLTM	76.6	94.5892	Q9NWH9	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000165934	CPSF2	75.89	95.1019	Q9P2I0	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000021776	AQR	73.8	94.0492	O60306	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000139746	RBM26	72.49	91.6327	Q5T8P6	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000125676	THOC2	72.13	96.9936	Q8NI27	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000067596	DHX8	66.94	93.0166	Q14562	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000085872	CHERP	66.32	95.5337	Q8IWX8	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000129317	PUS7L	63.22	93.2595	Q9H0K6	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000079134	THOC1	62.96	94.7148	Q96FV9	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000148840	PPRC1	61.47	96.6913	Q5VV67	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000123908	AGO2	58.51	93.0255	Q9UKV8	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000135870	RC3H1	53.8	96.0395	Q5TC82	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000116560	SFPQ	50.03	94.051	P23246	RBP,Epi	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000156304	SCAF4	46.97	97.0923	O95104	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000133226	SRRM1	39.38	97.3029	Q8IYB3	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000239306	RBM14	24.87	90.491	Q96PK6	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000179151	EDC3	23.46	95.2496	Q96F86	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000185252	ZNF74	15.99	94.6367	Q16587	TF,RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000130826	DKC1	13.19	93.6458	O60832	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000172795	DCP2	10.94	94.4269	Q8IU60	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000124193	SRSF6	10.44	93.6471	Q13247	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000173933	RBM4	9.63	90.8929	Q9BWF3	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000072756	TRNT1	9.23	94.4813	Q96Q11	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000084072	PPIE	8.79	91.0414	Q9UNP9	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000149532	CPSF7	7.63	92.188	Q8N684	RBP	High-throughput data combine LncPro prediction
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000147274	RBMX	7.29	93.8833	P38159	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000107164	FUBP3	7.03	92.7061	Q96I24	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000111605	CPSF6	6.41	94.3027	Q16630	RBP	ENCODE;High-throughput data combine LncPro prediction
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000254726	MEX3A	6.14	93.5866	A1L020	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000111364	DDX55	4.83	93.9176	Q8NHQ9	RBP	NA
ENSG00000260920	ENST00000565390	RP1-228H13.5	ENSG00000101138	CSTF1	3.06	93.9895	Q05048	RBP	NA

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lncRNA-DNA interaction for RP1-228H13.5

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP1-228H13.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

RNH1,CASP1,NDRG2,MGAT1,HAGH,NDUFS7,ATP6V0D1,SDSL,CLTB,PSMB10,MYL6,NAGLU,ABHD14B,RILP,BLVRB,PEX11G,S100A6,RABAC1,TMEM219,NDUFB7,CHMP2A,ACSF2,BRI3,ATP5MC3,LAMTOR4,CD63,HCFC1R1,GNB2,ASL,CTSD,GFER,MSRB1,NT5C

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP1-228H13.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000260920	ENST00000565390	MYL6	ENSG00000092841	ENST00000549566	-0.3740	1462	-	READ
ENSG00000260920	ENST00000565390	MYL6	ENSG00000092841	ENST00000546845	-0.1174	521	-	READ
ENSG00000260920	ENST00000565390	RILP	ENSG00000167705	ENST00000301336	-0.1001	596	-	PCPG,LUSC,BRCA,COAD,READ
ENSG00000260920	ENST00000565390	ACSF2	ENSG00000167107	ENST00000504392	-0.1303	53	-	PCPG,PRAD,COAD
ENSG00000260920	ENST00000565390	ACSF2	ENSG00000167107	ENST00000510262	-0.2338	635	-	PCPG,PRAD,COAD
ENSG00000260920	ENST00000565390	S100A6	ENSG00000197956	ENST00000496817	-0.1489	1444	-	PRAD
ENSG00000260920	ENST00000565390	S100A6	ENSG00000197956	ENST00000368719	-0.1489	1444	-	PRAD
ENSG00000260920	ENST00000565390	S100A6	ENSG00000197956	ENST00000368720	-0.1489	1444	-	PRAD
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000557633	-0.1880	726	-	PCPG,PRAD,BRCA,LUAD,COAD,READ
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000397856	-0.1329	729	-	PCPG,PRAD,BRCA,LUAD,COAD,READ
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000553593	-0.1488	628	-	PCPG,PRAD,BRCA,LUAD,COAD,READ
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000555767	-0.2703	1	-	PCPG,PRAD,BRCA,LUAD,COAD,READ
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000554379	-0.1242	1	-	PCPG,PRAD,BRCA,LUAD,COAD,READ
ENSG00000260920	ENST00000565390	NDRG2	ENSG00000165795	ENST00000557616	-0.1242	25	-	PCPG,PRAD,BRCA,LUAD,COAD,READ

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000260920.2	ENST00000565390.2	73	947	1168

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential